Prupe.2G191300_v2.0.a1

gag-polypeptide of LTR copia-type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000258
Physical Location & Seq
Forward (+)
23069246 .. 23070731
1486 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G191300.1

Sequence Viewer

Length: 879 bp
ATGGACACAGAGCGACTTGGAATCGATCCGTCTGGCAAGGGCCGGAACGGTGGAGAAGAGCTCAAGGACACGAAGCTACCAAAACCAACGCCATGGAAGATTGGGGGATTTTATGGAGTTTTTGAAGGAAGAGATGGAATGCCGGTTTCTGGCTATGTCATCTGGAGAGACTTGAATAAGAGGACCCGAGACATGCATGCGGTCGCCAAGATTGAGTCAAAGTTGAGATCTGAACGTGATAATGAGCAAAGGGAATATGGTATGTCTGGTCTTGCTCGTCCAGAACTTGTTCCCATTGACCCTGTTCGTCTTGATGGGAAGAACTACCCCATCTGGGCGCGGCGAATGGAGTTTTTCCTCAAGGAATTAAAAGTTGAATATGTACTCTATGAGCCATGCCCTAGCATTATTGTAGGATCTGTAGCATTTTCTGGAGGACTTACTGAATTGAAGGATGCTAAAGAGAAATGGATCAAGGATGACTTTCTGGGTCTTCGCACGATCTTGAACTATCTATGCGATGATCTCCTCCATCGTTATGGAAAGAGAAAGAAAACTACAAGTGCTAAACAACTGTGGGACGATCTAAAATTAATGTTTGGAACAAAGAAATATCTGGTTAGAAAGTACATGGATTTTCAGATGGTCGATGAAAAGCCACTTGTGGAGCAAATTCAAGAATTCAATCGCATTTTCGATGAAGTTGTGGCTTCTGGAATGACGTTGAGTGAGAAATTTCATGTATCTGCTATATTATCCAAGCTCCCTGCCTCTTGGAAGCATGTGAACATCAAGTTGAAGCGCAATATTGATGAGCCTTTGACTTTAGAAGTGTTGATGGATCATTTGAGGATTGAAGAAGAGTACGTTTGCGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DEK_C PC4 Retrotran_gag_2

Protein Analysis

293

Amino Acids

33.91

Weight (kDa)

8.52

Isoelectric Point (pI)

43.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00980
fragaria_vesca FvH4_1g25682 FvH4_2g13961 FvH4_2g20162 FvH4_2g24753 FvH4_3g12191 FvH4_3g12632 FvH4_3g16171 FvH4_4g05871 FvH4_4g05873 FvH4_4g10121 FvH4_4g15488 FvH4_4g23911 FvH4_4g27782 FvH4_5g08912 FvH4_5g23001 FvH4_5g24552 FvH4_5g32801 FvH4_5g32802 FvH4_6g05093 FvH4_6g19722 FvH4_6g20391 FvH4_6g33792 FvH4_7g01381 FvH4_7g16761 FvH4_7g16761 FvH4_7g16761
malus_domestica MD01G1082500.v1.1 MD15G1436400.v1.1
prunus_persica Prupe.2G021400_v2.0.a1 Prupe.2G052400_v2.0.a1 Prupe.2G065000_v2.0.a1 Prupe.2G187700_v2.0.a1 Prupe.2G187800_v2.0.a1 Prupe.2G189900_v2.0.a1 Prupe.2G191300_v2.0.a1 Prupe.2G191700_v2.0.a1 Prupe.4G265600_v2.0.a1 Prupe.7G014200_v2.0.a1 Prupe.7G039000_v2.0.a1
pyrus_communis pycom01g05590 pycom01g05910 pycom02g12230 pycom02g25840 pycom03g15580 pycom04g04480 pycom05g09230 pycom05g23350 pycom05g23360 pycom07g08380 pycom09g01980 pycom09g01990 pycom11g18190 pycom11g18200 pycom11g21580 pycom13g04160 pycom15g25800 pycom16g16210 pycom16g17230 pycom16g24560 pycom16g25700 pycom17g11020
rosa_chinensis RchiOBHm_Chr1g0359981 RchiOBHm_Chr2g0151961 RchiOBHm_Chr2g0171331 RchiOBHm_Chr5g0081471 RchiOBHm_Chr6g0283031 RchiOBHm_Chr7g0197111 RchiOBHm_Chr7g0222601
rosa_laevigata RLG00000027843 RLG00000027845 RLG00000030065
rosa_multiflora Rmu_sc0000381.1_g000031 Rmu_sc0001179.1_g000035 Rmu_sc0001616.1_g000046 Rmu_sc0001851.1_g000032 Rmu_sc0002152.1_g000013 Rmu_sc0004031.1_g000015 Rmu_sc0004645.1_g000003 Rmu_sc0007393.1_g000001 Rmu_sc0008949.1_g000003 Rmu_sc0009799.1_g000011 Rmu_sc0011614.1_g000001 Rmu_sc0011699.1_g000009 Rmu_sc0019280.1_g000001 Rmu_sc0023984.1_g000001 Rmu_ssc0000050.1_g000036
rosa_roxburghii Rroxscaffold_1G00022650 Rroxscaffold_1G00033480 Rroxscaffold_3G00270250 Rroxscaffold_4G00296600 Rroxscaffold_4G00296760 Rroxscaffold_6G00409840
rosa_rugosa Rorug01G0273800 Rorug01G0273900 Rorug01G0274000
rosa_samantha Rh1AG287300 Rh1AG288100 Rh1BG253000 Rh1BG253500 Rh1BG399800 Rh1CG270400 Rh1CG271000 Rh1DG282000 Rh1DG282500 Rh4DG126500 Rh5DG194600 Rh5DG461100
rosa_wichuraiana Rw0G009130 Rw1G002590 Rw1G008490 Rw1G012210 Rw1G014290 Rw1G014490 Rw1G025510 Rw2G025840 Rw2G026170 Rw2G036510 Rw3G003050 Rw4G009270 Rw5G002350 Rw5G013930 Rw5G019500 Rw5G025890 Rw5G029960 Rw5G032360 Rw6G009890 Rw6G015670 Rw6G015860 Rw7G010030 Rw7G032600 Rw7G032770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 340
AciI CCGC 2 cut(s) 200, 340
AclWI GGATC 4 cut(s) 20, 424, 479, 849
AcsI RAATTY 3 cut(s) 672, 680, 734
AfaI GTAC 3 cut(s) 384, 629, 866
AfiI CCNNNNNNNGG 2 cut(s) 149, 334
AgsI TTSAA 9 cut(s) 125, 175, 377, 451, 508, 677, 685, 799, 857
AluBI AGCT 3 cut(s) 61, 76, 763
AluI AGCT 3 cut(s) 61, 76, 763
Alw21I GWGCWC 1 cut(s) 63
Alw26I GTCTC 2 cut(s) 162, 183
AlwI GGATC 4 cut(s) 20, 424, 479, 849
Ama87I CYCGRG 1 cut(s) 186
AoxI GGCC 1 cut(s) 40
ApoI RAATTY 3 cut(s) 672, 680, 734
AseI ATTAAT 1 cut(s) 593
Asp700I GAANNNNTTC 1 cut(s) 288
AspLEI GCGC 2 cut(s) 340, 804
AspS9I GGNCC 2 cut(s) 40, 183
AvaI CYCGRG 1 cut(s) 186
AvaII GGWCC 1 cut(s) 183
BanII GRGCYC 1 cut(s) 63
BbsI GAAGAC 1 cut(s) 485
Bbv12I GWGCWC 1 cut(s) 63
BccI CCATC 6 cut(s) 128, 308, 338, 540, 637, 832
BcoDI GTCTC 2 cut(s) 162, 183
BfaI CTAG 1 cut(s) 402
BfmI CTRYAG 1 cut(s) 420
BglII AGATCT 1 cut(s) 227
BisI GCNGC 1 cut(s) 341
BlsI GCNGC 1 cut(s) 342
Bme18I GGWCC 1 cut(s) 183
BmeT110I CYCGRG 1 cut(s) 186
BmgT120I GGNCC 2 cut(s) 40, 183
BmiI GGNNCC 1 cut(s) 185
BmsI GCATC 1 cut(s) 445
BpiI GAAGAC 1 cut(s) 485
BplI GAGNNNNNCTC 2 cut(s) 45, 77
BpmI CTGGAG 2 cut(s) 184, 453
BpuEI CTTGAG 2 cut(s) 47, 344
Bsa29I ATCGAT 1 cut(s) 24
BsaJI CCNNGG 1 cut(s) 92
Bsc4I CCNNNNNNNGG 2 cut(s) 149, 334
Bse118I RCCGGY 1 cut(s) 142
BseCI ATCGAT 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 92
BseGI GGATG 2 cut(s) 460, 484
BseLI CCNNNNNNNGG 2 cut(s) 149, 334
BseRI GAGGAG 1 cut(s) 518
Bsh1236I CGCG 1 cut(s) 340
Bsh1285I CGRYCG 1 cut(s) 204
BshFI GGCC 1 cut(s) 42
BshVI ATCGAT 1 cut(s) 24
BsiEI CGRYCG 1 cut(s) 204
BsiHKAI GWGCWC 1 cut(s) 63
BsiHKCI CYCGRG 1 cut(s) 186
BsiSI CCGG 2 cut(s) 43, 143
BslFI GGGAC 1 cut(s) 593
BslI CCNNNNNNNGG 2 cut(s) 149, 334
BsmAI GTCTC 2 cut(s) 162, 183
BsmFI GGGAC 1 cut(s) 593
BsmI GAATGC 1 cut(s) 144
BsnI GGCC 1 cut(s) 42
BsoBI CYCGRG 1 cut(s) 186
Bsp1286I GDGCHC 1 cut(s) 63
Bsp143I GATC 8 cut(s) 25, 227, 416, 471, 501, 523, 583, 841
Bsp19I CCATGG 1 cut(s) 92
BspACI CCGC 2 cut(s) 200, 340
BspANI GGCC 1 cut(s) 42
BspDI ATCGAT 1 cut(s) 24
BspFNI CGCG 1 cut(s) 340
BspLI GGNNCC 1 cut(s) 185
BspPI GGATC 4 cut(s) 20, 424, 479, 849
BspQI GCTCTTC 1 cut(s) 51
BsrFI RCCGGY 1 cut(s) 142
BssAI RCCGGY 1 cut(s) 142
BssECI CCNNGG 1 cut(s) 92
BssMI GATC 8 cut(s) 25, 227, 416, 471, 501, 523, 583, 841
BssT1I CCWWGG 1 cut(s) 92
Bst4CI ACNGT 2 cut(s) 50, 576
Bst6I CTCTTC 3 cut(s) 51, 124, 855
BstC8I GCNNGC 1 cut(s) 198
BstDSI CCRYGG 1 cut(s) 92
BstF5I GGATG 2 cut(s) 460, 484
BstFNI CGCG 1 cut(s) 340
BstHHI GCGC 2 cut(s) 340, 804
BstKTI GATC 8 cut(s) 28, 230, 419, 474, 504, 526, 586, 844
BstMAI GTCTC 2 cut(s) 162, 183
BstMBI GATC 8 cut(s) 25, 227, 416, 471, 501, 523, 583, 841
BstMCI CGRYCG 1 cut(s) 204
BstNSI RCATGY 3 cut(s) 196, 200, 785
BstSFI CTRYAG 1 cut(s) 420
BstUI CGCG 1 cut(s) 340
BstV2I GAAGAC 1 cut(s) 485
BstX2I RGATCY 2 cut(s) 227, 416
BstXI CCANNNNNNTGG 2 cut(s) 93, 539
BstYI RGATCY 2 cut(s) 227, 416
Bsu15I ATCGAT 1 cut(s) 24
BsuRI GGCC 1 cut(s) 42
BsuTUI ATCGAT 1 cut(s) 24
BtgI CCRYGG 1 cut(s) 92
BtgZI GCGATG 1 cut(s) 534
BtsCI GGATG 2 cut(s) 460, 484
Cac8I GCNNGC 1 cut(s) 198
CfoI GCGC 2 cut(s) 340, 804
Cfr10I RCCGGY 1 cut(s) 142
Cfr13I GGNCC 2 cut(s) 40, 183
ClaI ATCGAT 1 cut(s) 24
Csp6I GTAC 3 cut(s) 383, 628, 865
CviAII CATG 7 cut(s) 93, 193, 197, 396, 631, 740, 782
CviJI RGCY 9 cut(s) 42, 61, 76, 153, 394, 658, 710, 763, 817
CviKI_1 RGCY 9 cut(s) 42, 61, 76, 153, 394, 658, 710, 763, 817
CviQI GTAC 3 cut(s) 383, 628, 865
DpnI GATC 8 cut(s) 27, 229, 418, 473, 503, 525, 585, 843
DpnII GATC 8 cut(s) 25, 227, 416, 471, 501, 523, 583, 841
Eam1104I CTCTTC 3 cut(s) 51, 124, 855
EarI CTCTTC 3 cut(s) 51, 124, 855
Ecl136II GAGCTC 1 cut(s) 61
Eco130I CCWWGG 1 cut(s) 92
Eco24I GRGCYC 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 183
Eco53kI GAGCTC 1 cut(s) 61
Eco88I CYCGRG 1 cut(s) 186
EcoICRI GAGCTC 1 cut(s) 61
EcoO109I RGGNCCY 1 cut(s) 183
EcoRI GAATTC 1 cut(s) 680
EcoT14I CCWWGG 1 cut(s) 92
EcoT22I ATGCAT 1 cut(s) 198
EcoT38I GRGCYC 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 92
FaeI CATG 7 cut(s) 96, 196, 200, 399, 634, 743, 785
FalI AAGNNNNNCTT 2 cut(s) 467, 499
FaqI GGGAC 1 cut(s) 593
FatI CATG 7 cut(s) 92, 192, 196, 395, 630, 739, 781
Fnu4HI GCNGC 1 cut(s) 341
FokI GGATG 2 cut(s) 467, 491
FriOI GRGCYC 1 cut(s) 63
Fsp4HI GCNGC 1 cut(s) 341
FspBI CTAG 1 cut(s) 402
GlaI GCGC 2 cut(s) 339, 803
GluI GCNGC 1 cut(s) 341
GsuI CTGGAG 2 cut(s) 184, 453
HaeIII GGCC 1 cut(s) 42
HapII CCGG 2 cut(s) 43, 143
HhaI GCGC 2 cut(s) 340, 804
Hin1II CATG 7 cut(s) 96, 196, 200, 399, 634, 743, 785
Hin6I GCGC 2 cut(s) 338, 802
HinP1I GCGC 2 cut(s) 338, 802
HinfI GANTC 2 cut(s) 21, 215
HpaII CCGG 2 cut(s) 43, 143
Hpy166II GTNNAC 1 cut(s) 787
Hpy188I TCNGA 2 cut(s) 232, 642
Hpy188III TCNNGA 7 cut(s) 163, 281, 311, 432, 505, 677, 714
Hpy8I GTNNAC 1 cut(s) 787
HpyAV CCTTC 2 cut(s) 119, 445
HpyCH4III ACNGT 2 cut(s) 50, 576
HpyCH4IV ACGT 3 cut(s) 235, 722, 867
HpyCH4V TGCA 1 cut(s) 196
HpySE526I ACGT 3 cut(s) 235, 722, 867
Hsp92II CATG 7 cut(s) 96, 196, 200, 399, 634, 743, 785
HspAI GCGC 2 cut(s) 338, 802
Kzo9I GATC 8 cut(s) 25, 227, 416, 471, 501, 523, 583, 841
LguI GCTCTTC 1 cut(s) 51
LmnI GCTCC 2 cut(s) 667, 768
LweI GCATC 1 cut(s) 445
MaeI CTAG 1 cut(s) 402
MaeII ACGT 3 cut(s) 235, 722, 867
MalI GATC 8 cut(s) 27, 229, 418, 473, 503, 525, 585, 843
MboI GATC 8 cut(s) 25, 227, 416, 471, 501, 523, 583, 841
MboII GAAGA 7 cut(s) 68, 109, 141, 331, 485, 869, 872
MflI RGATCY 2 cut(s) 227, 416
MhlI GDGCHC 1 cut(s) 63
MluCI AATT 6 cut(s) 365, 446, 590, 672, 680, 734
MlyI GAGTC 1 cut(s) 224
MnlI CCTC 6 cut(s) 174, 368, 428, 539, 781, 843
Mph1103I ATGCAT 1 cut(s) 198
MroXI GAANNNNTTC 1 cut(s) 288
MseI TTAA 2 cut(s) 368, 593
MslI CAYNNNNRTG 1 cut(s) 537
MspI CCGG 2 cut(s) 43, 143
Mva1269I GAATGC 1 cut(s) 144
MvnI CGCG 1 cut(s) 340
NcoI CCATGG 1 cut(s) 92
NdeII GATC 8 cut(s) 25, 227, 416, 471, 501, 523, 583, 841
NlaIII CATG 7 cut(s) 96, 196, 200, 399, 634, 743, 785
NlaIV GGNNCC 1 cut(s) 185
NsiI ATGCAT 1 cut(s) 198
NspI RCATGY 3 cut(s) 196, 200, 785
PaeI GCATGC 1 cut(s) 200
PciSI GCTCTTC 1 cut(s) 51
PctI GAATGC 1 cut(s) 144
PdmI GAANNNNTTC 1 cut(s) 288
PfeI GAWTC 1 cut(s) 21
PkrI GCNGC 1 cut(s) 342
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
PpuMI RGGWCCY 1 cut(s) 183
PshBI ATTAAT 1 cut(s) 593
Psp124BI GAGCTC 1 cut(s) 63
Psp5II RGGWCCY 1 cut(s) 183
PspN4I GGNNCC 1 cut(s) 185
PspPI GGNCC 2 cut(s) 40, 183
PspPPI RGGWCCY 1 cut(s) 183
PsuI RGATCY 2 cut(s) 227, 416
RsaI GTAC 3 cut(s) 384, 629, 866
RsaNI GTAC 3 cut(s) 383, 628, 865
RseI CAYNNNNRTG 1 cut(s) 537
SacI GAGCTC 1 cut(s) 63
SapI GCTCTTC 1 cut(s) 51
SaqAI TTAA 2 cut(s) 368, 593
SatI GCNGC 1 cut(s) 341
Sau3AI GATC 8 cut(s) 25, 227, 416, 471, 501, 523, 583, 841
Sau96I GGNCC 2 cut(s) 40, 183
SchI GAGTC 1 cut(s) 224
SduI GDGCHC 1 cut(s) 63
SetI ASST 6 cut(s) 63, 78, 238, 725, 765, 870
SfaNI GCATC 1 cut(s) 445
SfcI CTRYAG 1 cut(s) 420
SinI GGWCC 1 cut(s) 183
SmiMI CAYNNNNRTG 1 cut(s) 537
SmlI CTYRAG 2 cut(s) 62, 359
SmoI CTYRAG 2 cut(s) 62, 359
SphI GCATGC 1 cut(s) 200
Sse9I AATT 6 cut(s) 365, 446, 590, 672, 680, 734
SsiI CCGC 2 cut(s) 200, 340
SspI AATATT 1 cut(s) 808
SspMI CTAG 1 cut(s) 402
SstI GAGCTC 1 cut(s) 63
StyI CCWWGG 1 cut(s) 92
TaaI ACNGT 2 cut(s) 50, 576
TaiI ACGT 3 cut(s) 238, 725, 870
TaqI TCGA 3 cut(s) 24, 648, 696
TasI AATT 6 cut(s) 365, 446, 590, 672, 680, 734
TatI WGTACW 2 cut(s) 382, 627
TauI GCSGC 1 cut(s) 343
TfiI GAWTC 1 cut(s) 21
Tru1I TTAA 2 cut(s) 368, 593
Tru9I TTAA 2 cut(s) 368, 593
TspDTI ATGAA 3 cut(s) 666, 714, 728
TspGWI ACGGA 1 cut(s) 18
VpaK11BI GGWCC 1 cut(s) 183
VspI ATTAAT 1 cut(s) 593
XapI RAATTY 3 cut(s) 672, 680, 734
XceI RCATGY 3 cut(s) 196, 200, 785
XmnI GAANNNNTTC 1 cut(s) 288
XspI CTAG 1 cut(s) 402
Zsp2I ATGCAT 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.