Rorug01G0273900

Transcriptional Coactivator p15 (PC4)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000258
Physical Location & Seq
Forward (+)
38651949 .. 38658691
6743 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0273900.1

Sequence Viewer

Length: 393 bp
ATGTTTGACAACAAAGATGAAGAGAAAGATCATGCTATCACTGAAGAGGGAAACGAGCTTCCATACCTAGAGAGGCAACCTTCTGCCCAGCCACACAGGCTAAGACTCCAACATGCTAACGTGCATGTCCCCATTCTTTCCATTGGACAACCACGCATTCATGAGCGTGGACCCGTGGTCAGGAGGCCCGTGCACTGTGGTTGTTGTGGCCAAACGGGACATAACATTCGGACCTACAATGCGAACTGCTCTCATGATCGTTGGCTCATGGCCAGTACACTGCAGACGATGTACCCAAACAGGACACAACCGTTGCACCTGCAGTCAGAAAAGATGAAGCTGGAATCATCAAAGAATGCAAATAAGCCAATTTGGAAACCCATAATTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DEK_C PC4 Retrotran_gag_2 zf-CCHC

Protein Analysis

130

Amino Acids

14.99

Weight (kDa)

9.02

Isoelectric Point (pI)

72.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00980
fragaria_vesca FvH4_1g25682 FvH4_2g13961 FvH4_2g20162 FvH4_2g24753 FvH4_3g12191 FvH4_3g12632 FvH4_3g16171 FvH4_4g05871 FvH4_4g05873 FvH4_4g10121 FvH4_4g15488 FvH4_4g23911 FvH4_4g27782 FvH4_5g08912 FvH4_5g23001 FvH4_5g24552 FvH4_5g32801 FvH4_5g32802 FvH4_6g05093 FvH4_6g19722 FvH4_6g20391 FvH4_6g33792 FvH4_7g01381 FvH4_7g16761 FvH4_7g16761 FvH4_7g16761
malus_domestica MD01G1082500.v1.1 MD15G1436400.v1.1
prunus_persica Prupe.2G021400_v2.0.a1 Prupe.2G052400_v2.0.a1 Prupe.2G065000_v2.0.a1 Prupe.2G187700_v2.0.a1 Prupe.2G187800_v2.0.a1 Prupe.2G189900_v2.0.a1 Prupe.2G191300_v2.0.a1 Prupe.2G191700_v2.0.a1 Prupe.4G265600_v2.0.a1 Prupe.7G014200_v2.0.a1 Prupe.7G039000_v2.0.a1
pyrus_communis pycom01g05590 pycom01g05910 pycom02g12230 pycom02g25840 pycom03g15580 pycom04g04480 pycom05g09230 pycom05g23350 pycom05g23360 pycom07g08380 pycom09g01980 pycom09g01990 pycom11g18190 pycom11g18200 pycom11g21580 pycom13g04160 pycom15g25800 pycom16g16210 pycom16g17230 pycom16g24560 pycom16g25700 pycom17g11020
rosa_chinensis RchiOBHm_Chr1g0359981 RchiOBHm_Chr2g0151961 RchiOBHm_Chr2g0171331 RchiOBHm_Chr5g0081471 RchiOBHm_Chr6g0283031 RchiOBHm_Chr7g0197111 RchiOBHm_Chr7g0222601
rosa_laevigata RLG00000027843 RLG00000027845 RLG00000030065
rosa_multiflora Rmu_sc0000381.1_g000031 Rmu_sc0001179.1_g000035 Rmu_sc0001616.1_g000046 Rmu_sc0001851.1_g000032 Rmu_sc0002152.1_g000013 Rmu_sc0004031.1_g000015 Rmu_sc0004645.1_g000003 Rmu_sc0007393.1_g000001 Rmu_sc0008949.1_g000003 Rmu_sc0009799.1_g000011 Rmu_sc0011614.1_g000001 Rmu_sc0011699.1_g000009 Rmu_sc0019280.1_g000001 Rmu_sc0023984.1_g000001 Rmu_ssc0000050.1_g000036
rosa_roxburghii Rroxscaffold_1G00022650 Rroxscaffold_1G00033480 Rroxscaffold_3G00270250 Rroxscaffold_4G00296600 Rroxscaffold_4G00296760 Rroxscaffold_6G00409840
rosa_rugosa Rorug01G0273800 Rorug01G0273900 Rorug01G0274000
rosa_samantha Rh1AG287300 Rh1AG288100 Rh1BG253000 Rh1BG253500 Rh1BG399800 Rh1CG270400 Rh1CG271000 Rh1DG282000 Rh1DG282500 Rh4DG126500 Rh5DG194600 Rh5DG461100
rosa_wichuraiana Rw0G009130 Rw1G002590 Rw1G008490 Rw1G012210 Rw1G014290 Rw1G014490 Rw1G025510 Rw2G025840 Rw2G026170 Rw2G036510 Rw3G003050 Rw4G009270 Rw5G002350 Rw5G013930 Rw5G019500 Rw5G025890 Rw5G029960 Rw5G032360 Rw6G009890 Rw6G015670 Rw6G015860 Rw7G010030 Rw7G032600 Rw7G032770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 327
Acc36I ACCTGC 1 cut(s) 327
AcoI YGGCCR 2 cut(s) 208, 270
AcuI CTGAAG 1 cut(s) 63
AfaI GTAC 2 cut(s) 277, 293
AfiI CCNNNNNNNGG 1 cut(s) 180
AhdI GACNNNNNGTC 1 cut(s) 176
AluBI AGCT 2 cut(s) 58, 340
AluI AGCT 2 cut(s) 58, 340
Alw21I GWGCWC 1 cut(s) 195
Alw44I GTGCAC 1 cut(s) 191
AoxI GGCC 3 cut(s) 185, 208, 270
ApaLI GTGCAC 1 cut(s) 191
ArsI GACNNNNNNTTYG 2 cut(s) 210, 242
AspS9I GGNCC 3 cut(s) 170, 186, 231
AvaII GGWCC 2 cut(s) 170, 231
BaeGI GKGCMC 1 cut(s) 195
BalI TGGCCA 2 cut(s) 210, 272
Bbv12I GWGCWC 1 cut(s) 195
BfaI CTAG 1 cut(s) 68
BfmI CTRYAG 2 cut(s) 281, 320
BfuAI ACCTGC 1 cut(s) 327
BglI GCCNNNNNGGC 1 cut(s) 97
Bme18I GGWCC 2 cut(s) 170, 231
BmeRI GACNNNNNGTC 1 cut(s) 176
BmgT120I GGNCC 3 cut(s) 170, 186, 231
BmiI GGNNCC 1 cut(s) 172
BsaJI CCNNGG 1 cut(s) 174
Bsc4I CCNNNNNNNGG 1 cut(s) 180
Bse1I ACTGG 1 cut(s) 273
BseDI CCNNGG 1 cut(s) 174
BseLI CCNNNNNNNGG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 273
BseSI GKGCMC 1 cut(s) 195
BseYI CCCAGC 1 cut(s) 87
BshFI GGCC 3 cut(s) 187, 210, 272
BsiHKAI GWGCWC 1 cut(s) 195
BslFI GGGAC 2 cut(s) 113, 231
BslI CCNNNNNNNGG 1 cut(s) 180
BsmFI GGGAC 2 cut(s) 113, 231
BsmI GAATGC 2 cut(s) 156, 361
BsnI GGCC 3 cut(s) 187, 210, 272
Bsp1286I GDGCHC 1 cut(s) 195
Bsp143I GATC 2 cut(s) 28, 256
BspANI GGCC 3 cut(s) 187, 210, 272
BspHI TCATGA 2 cut(s) 160, 253
BspLI GGNNCC 1 cut(s) 172
BspMAI CTGCAG 2 cut(s) 285, 324
BspMI ACCTGC 1 cut(s) 327
BsrI ACTGG 1 cut(s) 273
BssECI CCNNGG 1 cut(s) 174
BssMI GATC 2 cut(s) 28, 256
Bst4CI ACNGT 2 cut(s) 197, 312
Bst6I CTCTTC 2 cut(s) 15, 39
BstDEI CTNAG 1 cut(s) 101
BstDSI CCRYGG 1 cut(s) 174
BstKTI GATC 2 cut(s) 31, 259
BstMBI GATC 2 cut(s) 28, 256
BstMWI GCNNNNNNNGC 1 cut(s) 97
BstNSI RCATGY 2 cut(s) 116, 128
BstSFI CTRYAG 2 cut(s) 281, 320
BstSLI GKGCMC 1 cut(s) 195
BsuRI GGCC 3 cut(s) 187, 210, 272
BtgI CCRYGG 1 cut(s) 174
BtsI GCAGTG 1 cut(s) 278
BtsIMutI CAGTG 3 cut(s) 39, 193, 278
BveI ACCTGC 1 cut(s) 327
CciI TCATGA 2 cut(s) 160, 253
Cfr13I GGNCC 3 cut(s) 170, 186, 231
Csp6I GTAC 2 cut(s) 276, 292
CviAII CATG 6 cut(s) 32, 113, 125, 161, 254, 268
CviJI RGCY 9 cut(s) 58, 91, 100, 187, 210, 265, 272, 340, 367
CviKI_1 RGCY 9 cut(s) 58, 91, 100, 187, 210, 265, 272, 340, 367
CviQI GTAC 2 cut(s) 276, 292
DdeI CTNAG 1 cut(s) 101
DpnI GATC 2 cut(s) 30, 258
DpnII GATC 2 cut(s) 28, 256
DriI GACNNNNNGTC 1 cut(s) 176
EaeI YGGCCR 2 cut(s) 208, 270
Eam1104I CTCTTC 2 cut(s) 15, 39
Eam1105I GACNNNNNGTC 1 cut(s) 176
EarI CTCTTC 2 cut(s) 15, 39
Eco47I GGWCC 2 cut(s) 170, 231
Eco57I CTGAAG 1 cut(s) 63
FaeI CATG 6 cut(s) 35, 116, 128, 164, 257, 271
FaqI GGGAC 2 cut(s) 113, 231
FatI CATG 6 cut(s) 31, 112, 124, 160, 253, 267
FspBI CTAG 1 cut(s) 68
GsaI CCCAGC 1 cut(s) 91
HaeIII GGCC 3 cut(s) 187, 210, 272
Hin1II CATG 6 cut(s) 35, 116, 128, 164, 257, 271
HinfI GANTC 2 cut(s) 105, 344
Hpy166II GTNNAC 3 cut(s) 170, 193, 278
Hpy188I TCNGA 2 cut(s) 231, 328
Hpy188III TCNNGA 3 cut(s) 161, 181, 254
Hpy8I GTNNAC 3 cut(s) 170, 193, 278
HpyAV CCTTC 1 cut(s) 90
HpyCH4III ACNGT 2 cut(s) 197, 312
HpyCH4IV ACGT 1 cut(s) 120
HpyCH4V TGCA 7 cut(s) 124, 193, 283, 316, 322, 359, 389
HpyF10VI GCNNNNNNNGC 1 cut(s) 97
HpyF3I CTNAG 1 cut(s) 101
HpySE526I ACGT 1 cut(s) 120
Hsp92II CATG 6 cut(s) 35, 116, 128, 164, 257, 271
Kzo9I GATC 2 cut(s) 28, 256
LpnPI CCDG 7 cut(s) 82, 101, 166, 286, 286, 326, 332
MaeI CTAG 1 cut(s) 68
MaeII ACGT 1 cut(s) 120
MalI GATC 2 cut(s) 30, 258
MboI GATC 2 cut(s) 28, 256
MboII GAAGA 2 cut(s) 32, 56
MhlI GDGCHC 1 cut(s) 195
MlsI TGGCCA 2 cut(s) 210, 272
MluCI AATT 2 cut(s) 369, 384
MluNI TGGCCA 2 cut(s) 210, 272
MlyI GAGTC 1 cut(s) 99
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 3 cut(s) 40, 66, 177
Mox20I TGGCCA 2 cut(s) 210, 272
MscI TGGCCA 2 cut(s) 210, 272
MslI CAYNNNNRTG 1 cut(s) 165
Msp20I TGGCCA 2 cut(s) 210, 272
Mva1269I GAATGC 2 cut(s) 156, 361
MwoI GCNNNNNNNGC 1 cut(s) 97
NdeII GATC 2 cut(s) 28, 256
NlaIII CATG 6 cut(s) 35, 116, 128, 164, 257, 271
NlaIV GGNNCC 1 cut(s) 172
NspI RCATGY 2 cut(s) 116, 128
PagI TCATGA 2 cut(s) 160, 253
PaqCI CACCTGC 1 cut(s) 327
PctI GAATGC 2 cut(s) 156, 361
PfeI GAWTC 1 cut(s) 344
PleI GAGTC 1 cut(s) 99
PpsI GAGTC 1 cut(s) 99
PspFI CCCAGC 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 172
PspPI GGNCC 3 cut(s) 170, 186, 231
PstI CTGCAG 2 cut(s) 285, 324
RsaI GTAC 2 cut(s) 277, 293
RsaNI GTAC 2 cut(s) 276, 292
RseI CAYNNNNRTG 1 cut(s) 165
Sau3AI GATC 2 cut(s) 28, 256
Sau96I GGNCC 3 cut(s) 170, 186, 231
SchI GAGTC 1 cut(s) 99
SduI GDGCHC 1 cut(s) 195
SetI ASST 7 cut(s) 60, 69, 82, 123, 236, 321, 342
SfcI CTRYAG 2 cut(s) 281, 320
SinI GGWCC 2 cut(s) 170, 231
SmiMI CAYNNNNRTG 1 cut(s) 165
Sse9I AATT 2 cut(s) 369, 384
SspMI CTAG 1 cut(s) 68
TaaI ACNGT 2 cut(s) 197, 312
TaiI ACGT 1 cut(s) 123
TasI AATT 2 cut(s) 369, 384
TatI WGTACW 1 cut(s) 275
TfiI GAWTC 1 cut(s) 344
TscAI CASTG 3 cut(s) 46, 200, 285
TspDTI ATGAA 3 cut(s) 33, 149, 350
TspRI CASTG 3 cut(s) 46, 200, 285
VneI GTGCAC 1 cut(s) 191
VpaK11BI GGWCC 2 cut(s) 170, 231
XceI RCATGY 2 cut(s) 116, 128
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.