Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0000258

Physical Location & Seq

Genomic Coordinates Forward (+)

26133072 .. 26133693

Gene Structure 622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g24560.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGGGGACGACGTGGTATTTGTGAACTGCTTGCACACTTTGGGCAGAGCAGCGAAACGTCTTAAAGAGAACGACTTAGTCTGCGACTCATCCCAAGAATCATTCATCACTCAAGGCTTCTACATTTTTCGGGCAAATCTTGTTGAAGAGCAACTGATTGCAATGATATCAGAAATCAACGTAGTTGATGGATCTGAAGGATGGTGGGTGGACACTGGCGCTTCTGACCACGATTGCTATGATCGTTCCCTATTCAAGACCTATTATGTGACTGAGGGAAGAAAGGTGCTATTGGGTGATTCGCACTCAACTGATGTTGCTGGTACTGGAGATGTGGAGTTGAAGTTCATCTCTGGAAAAACCATGATACTGAAAGATGTGATGCATAGTCCAGCGATAAGGAAGAATCTGGTCTTAGGCTTTCTTCTCAACAAGGCTAGATTCACTCAAACCATTGGGGCAAATACGTATACTCTCACTAAAAATGGCGTTTTGTGGGAAAGGTATATGCTACTGATGGGATGTTTAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000280 GO:0000910 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007112 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0008574 GO:0009524 GO:0009555 GO:0009987 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033206 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048856 GO:0051301 GO:0051321 GO:0051704 GO:0055046 GO:0061640 GO:0071840 GO:0080175 GO:0140013 GO:1903046 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

178

Amino Acids

19.84

Weight (kDa)

5.54

Isoelectric Point (pI)

35.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00980
fragaria_vesca	FvH4_1g25682 FvH4_2g13961 FvH4_2g20162 FvH4_2g24753 FvH4_3g12191 FvH4_3g12632 FvH4_3g16171 FvH4_4g05871 FvH4_4g05873 FvH4_4g10121 FvH4_4g15488 FvH4_4g23911 FvH4_4g27782 FvH4_5g08912 FvH4_5g23001 FvH4_5g24552 FvH4_5g32801 FvH4_5g32802 FvH4_6g05093 FvH4_6g19722 FvH4_6g20391 FvH4_6g33792 FvH4_7g01381 FvH4_7g16761 FvH4_7g16761 FvH4_7g16761
malus_domestica	MD01G1082500.v1.1 MD15G1436400.v1.1
prunus_persica	Prupe.2G021400_v2.0.a1 Prupe.2G052400_v2.0.a1 Prupe.2G065000_v2.0.a1 Prupe.2G187700_v2.0.a1 Prupe.2G187800_v2.0.a1 Prupe.2G189900_v2.0.a1 Prupe.2G191300_v2.0.a1 Prupe.2G191700_v2.0.a1 Prupe.4G265600_v2.0.a1 Prupe.7G014200_v2.0.a1 Prupe.7G039000_v2.0.a1
pyrus_communis	pycom01g05590 pycom01g05910 pycom02g12230 pycom02g25840 pycom03g15580 pycom04g04480 pycom05g09230 pycom05g23350 pycom05g23360 pycom07g08380 pycom09g01980 pycom09g01990 pycom11g18190 pycom11g18200 pycom11g21580 pycom13g04160 pycom15g25800 pycom16g16210 pycom16g17230 pycom16g24560 pycom16g25700 pycom17g11020
rosa_chinensis	RchiOBHm_Chr1g0359981 RchiOBHm_Chr2g0151961 RchiOBHm_Chr2g0171331 RchiOBHm_Chr5g0081471 RchiOBHm_Chr6g0283031 RchiOBHm_Chr7g0197111 RchiOBHm_Chr7g0222601
rosa_laevigata	RLG00000027843 RLG00000027845 RLG00000030065
rosa_multiflora	Rmu_sc0000381.1_g000031 Rmu_sc0001179.1_g000035 Rmu_sc0001616.1_g000046 Rmu_sc0001851.1_g000032 Rmu_sc0002152.1_g000013 Rmu_sc0004031.1_g000015 Rmu_sc0004645.1_g000003 Rmu_sc0007393.1_g000001 Rmu_sc0008949.1_g000003 Rmu_sc0009799.1_g000011 Rmu_sc0011614.1_g000001 Rmu_sc0011699.1_g000009 Rmu_sc0019280.1_g000001 Rmu_sc0023984.1_g000001 Rmu_ssc0000050.1_g000036
rosa_roxburghii	Rroxscaffold_1G00022650 Rroxscaffold_1G00033480 Rroxscaffold_3G00270250 Rroxscaffold_4G00296600 Rroxscaffold_4G00296760 Rroxscaffold_6G00409840
rosa_rugosa	Rorug01G0273800 Rorug01G0273900 Rorug01G0274000
rosa_samantha	Rh1AG287300 Rh1AG288100 Rh1BG253000 Rh1BG253500 Rh1BG399800 Rh1CG270400 Rh1CG271000 Rh1DG282000 Rh1DG282500 Rh4DG126500 Rh5DG194600 Rh5DG461100
rosa_wichuraiana	Rw0G009130 Rw1G002590 Rw1G008490 Rw1G012210 Rw1G014290 Rw1G014490 Rw1G025510 Rw2G025840 Rw2G026170 Rw2G036510 Rw3G003050 Rw4G009270 Rw5G002350 Rw5G013930 Rw5G019500 Rw5G025890 Rw5G029960 Rw5G032360 Rw6G009890 Rw6G015670 Rw6G015860 Rw7G010030 Rw7G032600 Rw7G032770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	470
AclWI	GGATC	1 cut(s)	199
AcuI	CTGAAG	1 cut(s)	216
AfaI	GTAC	1 cut(s)	325
AgsI	TTSAA	3 cut(s)	146, 256, 343
AjiI	CACGTC	1 cut(s)	13
AloI	GAACNNNNNNTCC	2 cut(s)	329, 361
AlwI	GGATC	1 cut(s)	199
ApeKI	GCWGC	1 cut(s)	50
ArsI	GACNNNNNNTTYG	1 cut(s)	34
AspLEI	GCGC	1 cut(s)	221
AsuHPI	GGTGA	1 cut(s)	308
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	3 cut(s)	182, 195, 511
BfaI	CTAG	1 cut(s)	438
BfoI	RGCGCY	1 cut(s)	222
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
BmgBI	CACGTC	1 cut(s)	13
BmsI	GCATC	1 cut(s)	372
BpmI	CTGGAG	1 cut(s)	348
BpuEI	CTTGAG	1 cut(s)	96
BsaAI	YACGTR	1 cut(s)	468
BsaXI	ACNNNNNCTCC	2 cut(s)	329, 359
Bse1I	ACTGG	2 cut(s)	220, 331
Bse3DI	GCAATG	1 cut(s)	168
BseGI	GGATG	3 cut(s)	89, 206, 527
BseMI	GCAATG	1 cut(s)	168
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	2 cut(s)	220, 331
BseXI	GCAGC	1 cut(s)	62
BslFI	GGGAC	1 cut(s)	20
BsmFI	GGGAC	1 cut(s)	20
Bsp143I	GATC	2 cut(s)	191, 241
BspCNI	CTCAG	1 cut(s)	265
BspPI	GGATC	1 cut(s)	199
BspQI	GCTCTTC	1 cut(s)	141
BsrDI	GCAATG	1 cut(s)	168
BsrI	ACTGG	2 cut(s)	220, 331
BssMI	GATC	2 cut(s)	191, 241
BssNAI	GTATAC	1 cut(s)	471
Bst1107I	GTATAC	1 cut(s)	471
Bst6I	CTCTTC	1 cut(s)	141
BstBAI	YACGTR	1 cut(s)	468
BstC8I	GCNNGC	1 cut(s)	32
BstDEI	CTNAG	3 cut(s)	76, 273, 415
BstF5I	GGATG	3 cut(s)	89, 206, 527
BstH2I	RGCGCY	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	221
BstKTI	GATC	2 cut(s)	194, 244
BstMBI	GATC	2 cut(s)	191, 241
BstSNI	TACGTA	1 cut(s)	468
BstV1I	GCAGC	1 cut(s)	62
BstX2I	RGATCY	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	191
BstZ17I	GTATAC	1 cut(s)	471
BtrI	CACGTC	1 cut(s)	13
BtsCI	GGATG	3 cut(s)	89, 206, 527
BtsIMutI	CAGTG	1 cut(s)	213
Cac8I	GCNNGC	1 cut(s)	32
CfoI	GCGC	1 cut(s)	221
Csp6I	GTAC	1 cut(s)	324
CviAII	CATG	1 cut(s)	364
CviJI	RGCY	3 cut(s)	117, 420, 437
CviKI_1	RGCY	3 cut(s)	117, 420, 437
CviQI	GTAC	1 cut(s)	324
DdeI	CTNAG	3 cut(s)	76, 273, 415
DpnI	GATC	2 cut(s)	193, 243
DpnII	GATC	2 cut(s)	191, 241
DraI	TTTAAA	1 cut(s)	528
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Eco105I	TACGTA	1 cut(s)	468
Eco32I	GATATC	1 cut(s)	168
Eco57I	CTGAAG	1 cut(s)	216
EcoRV	GATATC	1 cut(s)	168
EcoT22I	ATGCAT	1 cut(s)	387
FaeI	CATG	1 cut(s)	367
FaiI	YATR	7 cut(s)	240, 267, 365, 387, 471, 507, 509
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	1 cut(s)	363
FblI	GTMKAC	1 cut(s)	470
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	2 cut(s)	76, 213
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	1 cut(s)	438
GlaI	GCGC	1 cut(s)	220
GluI	GCNGC	1 cut(s)	51
GsuI	CTGGAG	1 cut(s)	348
HaeII	RGCGCY	1 cut(s)	222
HhaI	GCGC	1 cut(s)	221
Hin1II	CATG	1 cut(s)	367
Hin6I	GCGC	1 cut(s)	219
HinP1I	GCGC	1 cut(s)	219
HinfI	GANTC	5 cut(s)	86, 98, 299, 406, 441
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	3 cut(s)	25, 211, 471
Hpy188I	TCNGA	3 cut(s)	172, 196, 226
Hpy188III	TCNNGA	2 cut(s)	256, 354
Hpy8I	GTNNAC	3 cut(s)	25, 211, 471
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	1 cut(s)	191
HpyCH4IV	ACGT	4 cut(s)	12, 58, 180, 467
HpyCH4V	TGCA	3 cut(s)	34, 161, 385
HpyF3I	CTNAG	3 cut(s)	76, 273, 415
HpySE526I	ACGT	4 cut(s)	12, 58, 180, 467
Hsp92II	CATG	1 cut(s)	367
HspAI	GCGC	1 cut(s)	219
Kzo9I	GATC	2 cut(s)	191, 241
LguI	GCTCTTC	1 cut(s)	141
LpnPI	CCDG	6 cut(s)	201, 306, 312, 339, 395, 405
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	1 cut(s)	372
MaeI	CTAG	1 cut(s)	438
MaeII	ACGT	4 cut(s)	12, 58, 180, 467
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	2 cut(s)	193, 243
MboI	GATC	2 cut(s)	191, 241
MboII	GAAGA	4 cut(s)	158, 291, 415, 416
MflI	RGATCY	1 cut(s)	191
MluCI	AATT	1 cut(s)	529
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	1 cut(s)	268
Mph1103I	ATGCAT	1 cut(s)	387
MseI	TTAA	2 cut(s)	63, 527
NdeII	GATC	2 cut(s)	191, 241
NlaIII	CATG	1 cut(s)	367
NmuCI	GTSAC	1 cut(s)	268
NsiI	ATGCAT	1 cut(s)	387
PciSI	GCTCTTC	1 cut(s)	141
PfeI	GAWTC	4 cut(s)	98, 299, 406, 441
PflFI	GACNNNGTC	1 cut(s)	77
PkrI	GCNGC	1 cut(s)	52
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
Ppu21I	YACGTR	1 cut(s)	468
PsuI	RGATCY	1 cut(s)	191
PsyI	GACNNNGTC	1 cut(s)	77
RsaI	GTAC	1 cut(s)	325
RsaNI	GTAC	1 cut(s)	324
SapI	GCTCTTC	1 cut(s)	141
SaqAI	TTAA	2 cut(s)	63, 527
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	2 cut(s)	191, 241
SchI	GAGTC	1 cut(s)	80
SetI	ASST	7 cut(s)	15, 61, 183, 263, 288, 470, 506
SfaNI	GCATC	1 cut(s)	372
SmlI	CTYRAG	1 cut(s)	111
SmoI	CTYRAG	1 cut(s)	111
SnaBI	TACGTA	1 cut(s)	468
Sse9I	AATT	1 cut(s)	529
SspMI	CTAG	1 cut(s)	438
TaiI	ACGT	4 cut(s)	15, 61, 183, 470
TasI	AATT	1 cut(s)	529
TfiI	GAWTC	4 cut(s)	98, 299, 406, 441
Tru1I	TTAA	2 cut(s)	63, 527
Tru9I	TTAA	2 cut(s)	63, 527
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	2 cut(s)	94, 337
TspRI	CASTG	1 cut(s)	220
Tth111I	GACNNNGTC	1 cut(s)	77
XmiI	GTMKAC	1 cut(s)	470
XspI	CTAG	1 cut(s)	438
Zsp2I	ATGCAT	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.