pycom09g01990

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0000258
Physical Location & Seq
Forward (+)
1467132 .. 1467717
586 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g01990.1

Sequence Viewer

Length: 369 bp
ATGAAACTTTTGGTAAGCAACATATTGAGAGGGTGTGAGTTCAAAGGTTCTTCCACTGTGCAAGGAAGAACTTTATCAGAAGAAGTTTCTGGGTTGTTTTATCCTGGGGACGACGTGGTGTTTGTGAACTGCTTGCACACTTTGGGCAGAGCCGCGAAACGTCTTAAAGAGAGCGACTTAGTCCGCGACTCATCTCAAGAATCATTCACTACTCAAGGCTTCTACATTTTTGGGGTAACTTCGTTCCTTTCTATTTCAGTATTCAACAGTAATCATAGTTCTAGGATTCATGTTTTTATTGGTTTTTTGTGTGTTGAAATGTTGGTTTTGAGTTTCAACTATGCCCTAACCTTTTTCGATCGGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_6

Protein Analysis

123

Amino Acids

13.68

Weight (kDa)

6.81

Isoelectric Point (pI)

43.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00980
fragaria_vesca FvH4_1g25682 FvH4_2g13961 FvH4_2g20162 FvH4_2g24753 FvH4_3g12191 FvH4_3g12632 FvH4_3g16171 FvH4_4g05871 FvH4_4g05873 FvH4_4g10121 FvH4_4g15488 FvH4_4g23911 FvH4_4g27782 FvH4_5g08912 FvH4_5g23001 FvH4_5g24552 FvH4_5g32801 FvH4_5g32802 FvH4_6g05093 FvH4_6g19722 FvH4_6g20391 FvH4_6g33792 FvH4_7g01381 FvH4_7g16761 FvH4_7g16761 FvH4_7g16761
malus_domestica MD01G1082500.v1.1 MD15G1436400.v1.1
prunus_persica Prupe.2G021400_v2.0.a1 Prupe.2G052400_v2.0.a1 Prupe.2G065000_v2.0.a1 Prupe.2G187700_v2.0.a1 Prupe.2G187800_v2.0.a1 Prupe.2G189900_v2.0.a1 Prupe.2G191300_v2.0.a1 Prupe.2G191700_v2.0.a1 Prupe.4G265600_v2.0.a1 Prupe.7G014200_v2.0.a1 Prupe.7G039000_v2.0.a1
pyrus_communis pycom01g05590 pycom01g05910 pycom02g12230 pycom02g25840 pycom03g15580 pycom04g04480 pycom05g09230 pycom05g23350 pycom05g23360 pycom07g08380 pycom09g01980 pycom09g01990 pycom11g18190 pycom11g18200 pycom11g21580 pycom13g04160 pycom15g25800 pycom16g16210 pycom16g17230 pycom16g24560 pycom16g25700 pycom17g11020
rosa_chinensis RchiOBHm_Chr1g0359981 RchiOBHm_Chr2g0151961 RchiOBHm_Chr2g0171331 RchiOBHm_Chr5g0081471 RchiOBHm_Chr6g0283031 RchiOBHm_Chr7g0197111 RchiOBHm_Chr7g0222601
rosa_laevigata RLG00000027843 RLG00000027845 RLG00000030065
rosa_multiflora Rmu_sc0000381.1_g000031 Rmu_sc0001179.1_g000035 Rmu_sc0001616.1_g000046 Rmu_sc0001851.1_g000032 Rmu_sc0002152.1_g000013 Rmu_sc0004031.1_g000015 Rmu_sc0004645.1_g000003 Rmu_sc0007393.1_g000001 Rmu_sc0008949.1_g000003 Rmu_sc0009799.1_g000011 Rmu_sc0011614.1_g000001 Rmu_sc0011699.1_g000009 Rmu_sc0019280.1_g000001 Rmu_sc0023984.1_g000001 Rmu_ssc0000050.1_g000036
rosa_roxburghii Rroxscaffold_1G00022650 Rroxscaffold_1G00033480 Rroxscaffold_3G00270250 Rroxscaffold_4G00296600 Rroxscaffold_4G00296760 Rroxscaffold_6G00409840
rosa_rugosa Rorug01G0273800 Rorug01G0273900 Rorug01G0274000
rosa_samantha Rh1AG287300 Rh1AG288100 Rh1BG253000 Rh1BG253500 Rh1BG399800 Rh1CG270400 Rh1CG271000 Rh1DG282000 Rh1DG282500 Rh4DG126500 Rh5DG194600 Rh5DG461100
rosa_wichuraiana Rw0G009130 Rw1G002590 Rw1G008490 Rw1G012210 Rw1G014290 Rw1G014490 Rw1G025510 Rw2G025840 Rw2G026170 Rw2G036510 Rw3G003050 Rw4G009270 Rw5G002350 Rw5G013930 Rw5G019500 Rw5G025890 Rw5G029960 Rw5G032360 Rw6G009890 Rw6G015670 Rw6G015860 Rw7G010030 Rw7G032600 Rw7G032770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 155, 186
AciI CCGC 2 cut(s) 153, 184
AgsI TTSAA 4 cut(s) 43, 265, 317, 337
AjiI CACGTC 1 cut(s) 115
AjnI CCWGG 1 cut(s) 103
ArsI GACNNNNNNTTYG 2 cut(s) 104, 136
BciT130I CCWGG 1 cut(s) 105
BfaI CTAG 1 cut(s) 282
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
Bme1390I CCNGG 1 cut(s) 105
BmgBI CACGTC 1 cut(s) 115
BmrFI CCNGG 1 cut(s) 105
BpuEI CTTGAG 2 cut(s) 180, 198
BsaJI CCNNGG 1 cut(s) 104
BseBI CCWGG 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 104
Bsh1236I CGCG 2 cut(s) 155, 186
Bsh1285I CGRYCG 1 cut(s) 361
BsiEI CGRYCG 1 cut(s) 361
BslFI GGGAC 1 cut(s) 122
BsmFI GGGAC 1 cut(s) 122
Bsp143I GATC 1 cut(s) 358
BspACI CCGC 2 cut(s) 153, 184
BspFNI CGCG 2 cut(s) 155, 186
BssECI CCNNGG 1 cut(s) 104
BssMI GATC 1 cut(s) 358
Bst2UI CCWGG 1 cut(s) 105
Bst4CI ACNGT 2 cut(s) 58, 269
BstC8I GCNNGC 1 cut(s) 134
BstDEI CTNAG 1 cut(s) 178
BstFNI CGCG 2 cut(s) 155, 186
BstKTI GATC 1 cut(s) 361
BstMBI GATC 1 cut(s) 358
BstMCI CGRYCG 1 cut(s) 361
BstNI CCWGG 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 103
BstUI CGCG 2 cut(s) 155, 186
BtrI CACGTC 1 cut(s) 115
BtsIMutI CAGTG 1 cut(s) 54
Cac8I GCNNGC 1 cut(s) 134
CviAII CATG 1 cut(s) 290
CviJI RGCY 2 cut(s) 152, 219
CviKI_1 RGCY 2 cut(s) 152, 219
DdeI CTNAG 1 cut(s) 178
DpnI GATC 1 cut(s) 360
DpnII GATC 1 cut(s) 358
EcoRII CCWGG 1 cut(s) 103
FaeI CATG 1 cut(s) 293
FaiI YATR 5 cut(s) 23, 276, 291, 342, 367
FaqI GGGAC 1 cut(s) 122
FatI CATG 1 cut(s) 289
Fnu4HI GCNGC 1 cut(s) 153
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 1 cut(s) 282
GluI GCNGC 1 cut(s) 153
Hin1II CATG 1 cut(s) 293
HinfI GANTC 3 cut(s) 188, 200, 286
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 1 cut(s) 79
Hpy188III TCNNGA 1 cut(s) 197
Hpy8I GTNNAC 1 cut(s) 127
Hpy99I CGWCG 1 cut(s) 116
HpyCH4III ACNGT 2 cut(s) 58, 269
HpyCH4IV ACGT 2 cut(s) 114, 160
HpyCH4V TGCA 2 cut(s) 61, 136
HpyF3I CTNAG 1 cut(s) 178
HpySE526I ACGT 2 cut(s) 114, 160
Hsp92II CATG 1 cut(s) 293
Kzo9I GATC 1 cut(s) 358
LpnPI CCDG 3 cut(s) 75, 90, 117
MaeI CTAG 1 cut(s) 282
MaeII ACGT 2 cut(s) 114, 160
MaeIII GTNAC 1 cut(s) 235
MalI GATC 1 cut(s) 360
MboI GATC 1 cut(s) 358
MboII GAAGA 3 cut(s) 42, 78, 92
MlyI GAGTC 1 cut(s) 182
MnlI CCTC 1 cut(s) 23
MseI TTAA 1 cut(s) 165
MspR9I CCNGG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 105
MvnI CGCG 2 cut(s) 155, 186
NdeII GATC 1 cut(s) 358
NlaIII CATG 1 cut(s) 293
PfeI GAWTC 2 cut(s) 200, 286
PflFI GACNNNGTC 1 cut(s) 179
PkrI GCNGC 1 cut(s) 154
Ple19I CGATCG 1 cut(s) 361
PleI GAGTC 1 cut(s) 182
PpsI GAGTC 1 cut(s) 182
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
PsrI GAACNNNNNNTAC 2 cut(s) 262, 294
PsyI GACNNNGTC 1 cut(s) 179
PvuI CGATCG 1 cut(s) 361
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 1 cut(s) 358
SchI GAGTC 1 cut(s) 182
ScrFI CCNGG 1 cut(s) 105
SetI ASST 4 cut(s) 49, 117, 163, 353
SmlI CTYRAG 2 cut(s) 195, 213
SmoI CTYRAG 2 cut(s) 195, 213
SsiI CCGC 2 cut(s) 153, 184
SspMI CTAG 1 cut(s) 282
StyD4I CCNGG 1 cut(s) 103
TaaI ACNGT 2 cut(s) 58, 269
TaiI ACGT 2 cut(s) 117, 163
TaqI TCGA 1 cut(s) 357
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 2 cut(s) 200, 286
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TscAI CASTG 1 cut(s) 61
TspDTI ATGAA 2 cut(s) 17, 278
TspRI CASTG 1 cut(s) 61
Tth111I GACNNNGTC 1 cut(s) 179
XspI CTAG 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.