Prupe.2G052400_v2.0.a1

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000258
Physical Location & Seq
Forward (+)
6073300 .. 6073811
512 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G052400.1

Sequence Viewer

Length: 408 bp
ATGGATCCCATCACCAAACTTCCTGATGTTTCCAAGATCGATACCTTCAATGAGCTTTCTTTAAATGCTGGCAAGTACGAGTGTAACAAAATATGTAGGCACACCATTGTGTGCACACTTTCTAACGAGTTGTTTTATATATATTGTTCATACAAAACCGCAAAAGAGATTTGGGAGAATTTGAACAAAAAGTATGTGATCGAAGATGCTAGCACCCAAAAATATGCAATTGGAAATTTCCTGCAATTCCAAATGGTGGAGAGCAAAGATGTGTCATTACAAATTCATGAGTACCACAAGCTTGTCAACAAATTGAAAAATGAGGACGTTGATCTACCTGAAACACTTGTGTGTGGAAGTCTCATTGAAAAGCTCCCTGAATTATGGAAGGAATGCAGAACAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2

Protein Analysis

136

Amino Acids

15.74

Weight (kDa)

5.64

Isoelectric Point (pI)

47.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00980
fragaria_vesca FvH4_1g25682 FvH4_2g13961 FvH4_2g20162 FvH4_2g24753 FvH4_3g12191 FvH4_3g12632 FvH4_3g16171 FvH4_4g05871 FvH4_4g05873 FvH4_4g10121 FvH4_4g15488 FvH4_4g23911 FvH4_4g27782 FvH4_5g08912 FvH4_5g23001 FvH4_5g24552 FvH4_5g32801 FvH4_5g32802 FvH4_6g05093 FvH4_6g19722 FvH4_6g20391 FvH4_6g33792 FvH4_7g01381 FvH4_7g16761 FvH4_7g16761 FvH4_7g16761
malus_domestica MD01G1082500.v1.1 MD15G1436400.v1.1
prunus_persica Prupe.2G021400_v2.0.a1 Prupe.2G052400_v2.0.a1 Prupe.2G065000_v2.0.a1 Prupe.2G187700_v2.0.a1 Prupe.2G187800_v2.0.a1 Prupe.2G189900_v2.0.a1 Prupe.2G191300_v2.0.a1 Prupe.2G191700_v2.0.a1 Prupe.4G265600_v2.0.a1 Prupe.7G014200_v2.0.a1 Prupe.7G039000_v2.0.a1
pyrus_communis pycom01g05590 pycom01g05910 pycom02g12230 pycom02g25840 pycom03g15580 pycom04g04480 pycom05g09230 pycom05g23350 pycom05g23360 pycom07g08380 pycom09g01980 pycom09g01990 pycom11g18190 pycom11g18200 pycom11g21580 pycom13g04160 pycom15g25800 pycom16g16210 pycom16g17230 pycom16g24560 pycom16g25700 pycom17g11020
rosa_chinensis RchiOBHm_Chr1g0359981 RchiOBHm_Chr2g0151961 RchiOBHm_Chr2g0171331 RchiOBHm_Chr5g0081471 RchiOBHm_Chr6g0283031 RchiOBHm_Chr7g0197111 RchiOBHm_Chr7g0222601
rosa_laevigata RLG00000027843 RLG00000027845 RLG00000030065
rosa_multiflora Rmu_sc0000381.1_g000031 Rmu_sc0001179.1_g000035 Rmu_sc0001616.1_g000046 Rmu_sc0001851.1_g000032 Rmu_sc0002152.1_g000013 Rmu_sc0004031.1_g000015 Rmu_sc0004645.1_g000003 Rmu_sc0007393.1_g000001 Rmu_sc0008949.1_g000003 Rmu_sc0009799.1_g000011 Rmu_sc0011614.1_g000001 Rmu_sc0011699.1_g000009 Rmu_sc0019280.1_g000001 Rmu_sc0023984.1_g000001 Rmu_ssc0000050.1_g000036
rosa_roxburghii Rroxscaffold_1G00022650 Rroxscaffold_1G00033480 Rroxscaffold_3G00270250 Rroxscaffold_4G00296600 Rroxscaffold_4G00296760 Rroxscaffold_6G00409840
rosa_rugosa Rorug01G0273800 Rorug01G0273900 Rorug01G0274000
rosa_samantha Rh1AG287300 Rh1AG288100 Rh1BG253000 Rh1BG253500 Rh1BG399800 Rh1CG270400 Rh1CG271000 Rh1DG282000 Rh1DG282500 Rh4DG126500 Rh5DG194600 Rh5DG461100
rosa_wichuraiana Rw0G009130 Rw1G002590 Rw1G008490 Rw1G012210 Rw1G014290 Rw1G014490 Rw1G025510 Rw2G025840 Rw2G026170 Rw2G036510 Rw3G003050 Rw4G009270 Rw5G002350 Rw5G013930 Rw5G019500 Rw5G025890 Rw5G029960 Rw5G032360 Rw6G009890 Rw6G015670 Rw6G015860 Rw7G010030 Rw7G032600 Rw7G032770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 256
AciI CCGC 1 cut(s) 159
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 3 cut(s) 178, 235, 282
AfaI GTAC 2 cut(s) 77, 293
AfiI CCNNNNNNNGG 1 cut(s) 256
AgsI TTSAA 4 cut(s) 49, 184, 316, 368
AleI CACNNNNGTG 2 cut(s) 107, 349
AluBI AGCT 3 cut(s) 55, 301, 373
AluI AGCT 3 cut(s) 55, 301, 373
Alw21I GWGCWC 1 cut(s) 116
Alw26I GTCTC 1 cut(s) 365
Alw44I GTGCAC 1 cut(s) 112
AlwI GGATC 1 cut(s) 12
ApaLI GTGCAC 1 cut(s) 112
ApoI RAATTY 3 cut(s) 178, 235, 282
AsuHPI GGTGA 1 cut(s) 4
AsuNHI GCTAGC 1 cut(s) 209
BaeGI GKGCMC 1 cut(s) 116
BamHI GGATCC 1 cut(s) 4
Bbv12I GWGCWC 1 cut(s) 116
BccI CCATC 1 cut(s) 17
BcoDI GTCTC 1 cut(s) 365
BfaI CTAG 1 cut(s) 210
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 196
BmtI GCTAGC 1 cut(s) 213
Bsa29I ATCGAT 1 cut(s) 39
Bsc4I CCNNNNNNNGG 1 cut(s) 256
BseCI ATCGAT 1 cut(s) 39
BseLI CCNNNNNNNGG 1 cut(s) 256
BseSI GKGCMC 1 cut(s) 116
BshVI ATCGAT 1 cut(s) 39
BsiHKAI GWGCWC 1 cut(s) 116
BslI CCNNNNNNNGG 1 cut(s) 256
BsmAI GTCTC 1 cut(s) 365
BsmI GAATGC 1 cut(s) 398
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 4 cut(s) 4, 36, 198, 331
BspACI CCGC 1 cut(s) 159
BspDI ATCGAT 1 cut(s) 39
BspHI TCATGA 1 cut(s) 286
BspLI GGNNCC 1 cut(s) 6
BspOI GCTAGC 1 cut(s) 213
BspPI GGATC 1 cut(s) 12
BssMI GATC 4 cut(s) 4, 36, 198, 331
BstC8I GCNNGC 2 cut(s) 70, 211
BstKTI GATC 4 cut(s) 7, 39, 201, 334
BstMAI GTCTC 1 cut(s) 365
BstMBI GATC 4 cut(s) 4, 36, 198, 331
BstSLI GKGCMC 1 cut(s) 116
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
Bsu15I ATCGAT 1 cut(s) 39
BsuTUI ATCGAT 1 cut(s) 39
Cac8I GCNNGC 2 cut(s) 70, 211
CciI TCATGA 1 cut(s) 286
ClaI ATCGAT 1 cut(s) 39
Csp6I GTAC 2 cut(s) 76, 292
CviAII CATG 2 cut(s) 287, 405
CviJI RGCY 3 cut(s) 55, 301, 373
CviKI_1 RGCY 3 cut(s) 55, 301, 373
CviQI GTAC 2 cut(s) 76, 292
DpnI GATC 4 cut(s) 6, 38, 200, 333
DpnII GATC 4 cut(s) 4, 36, 198, 331
DraI TTTAAA 1 cut(s) 63
FaeI CATG 2 cut(s) 290, 408
FatI CATG 2 cut(s) 286, 404
FspBI CTAG 1 cut(s) 210
Hin1II CATG 2 cut(s) 290, 408
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HindIII AAGCTT 1 cut(s) 299
HphI GGTGA 1 cut(s) 4
Hpy166II GTNNAC 2 cut(s) 114, 307
Hpy188III TCNNGA 2 cut(s) 23, 287
Hpy8I GTNNAC 2 cut(s) 114, 307
HpyAV CCTTC 2 cut(s) 55, 382
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 4 cut(s) 114, 227, 244, 396
HpySE526I ACGT 1 cut(s) 327
Hsp92II CATG 2 cut(s) 290, 408
Kzo9I GATC 4 cut(s) 4, 36, 198, 331
LmnI GCTCC 1 cut(s) 378
LpnPI CCDG 5 cut(s) 36, 54, 254, 351, 390
LweI GCATC 1 cut(s) 196
MaeI CTAG 1 cut(s) 210
MaeII ACGT 1 cut(s) 327
MaeIII GTNAC 1 cut(s) 83
MalI GATC 4 cut(s) 6, 38, 200, 333
MboI GATC 4 cut(s) 4, 36, 198, 331
MboII GAAGA 1 cut(s) 215
MfeI CAATTG 1 cut(s) 228
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 116
MluCI AATT 7 cut(s) 178, 228, 235, 245, 282, 311, 380
MnlI CCTC 1 cut(s) 316
MseI TTAA 1 cut(s) 62
MslI CAYNNNNRTG 2 cut(s) 107, 349
MunI CAATTG 1 cut(s) 228
Mva1269I GAATGC 1 cut(s) 398
NdeII GATC 4 cut(s) 4, 36, 198, 331
NheI GCTAGC 1 cut(s) 209
NlaIII CATG 2 cut(s) 290, 408
NlaIV GGNNCC 1 cut(s) 6
OliI CACNNNNGTG 2 cut(s) 107, 349
PagI TCATGA 1 cut(s) 286
PctI GAATGC 1 cut(s) 398
PflMI CCANNNNNTGG 1 cut(s) 256
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 2 cut(s) 77, 293
RsaNI GTAC 2 cut(s) 76, 292
RseI CAYNNNNRTG 2 cut(s) 107, 349
SaqAI TTAA 1 cut(s) 62
Sau3AI GATC 4 cut(s) 4, 36, 198, 331
SduI GDGCHC 1 cut(s) 116
SetI ASST 6 cut(s) 47, 57, 303, 330, 340, 375
SfaNI GCATC 1 cut(s) 196
SmiMI CAYNNNNRTG 2 cut(s) 107, 349
Sse9I AATT 7 cut(s) 178, 228, 235, 245, 282, 311, 380
SsiI CCGC 1 cut(s) 159
SspMI CTAG 1 cut(s) 210
TaiI ACGT 1 cut(s) 330
TaqI TCGA 2 cut(s) 39, 201
TasI AATT 7 cut(s) 178, 228, 235, 245, 282, 311, 380
Tru1I TTAA 1 cut(s) 62
Tru9I TTAA 1 cut(s) 62
TspDTI ATGAA 2 cut(s) 138, 275
Van91I CCANNNNNTGG 1 cut(s) 256
VneI GTGCAC 1 cut(s) 112
XapI RAATTY 3 cut(s) 178, 235, 282
XspI CTAG 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.