Prupe.2G189900_v2.0.a1

gag-polypeptide of LTR copia-type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000258
Physical Location & Seq
Forward (+)
22928270 .. 22931907
3638 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G189900.1

Sequence Viewer

Length: 1494 bp
ATGGACTCTGAAAGTCGACGGAAAATCGAGGATACGGTTTTGGACATATTGAGGAAAACCAACTTGGAGGAGATGACTGAGTTCAAAGTCCGAAAGGTAACCTCGGAGCAACTTGGAATCGATTTCTCTGATACAGAGCACAAGAGCTTCGTGAGAAGCGTGATCGAAAGGTTCCTGCTTTCGTCTCCGGAGCCCAAGGTGAACGCTCGGGAGGAGCTCATGGAGACGAATGTGCAAGAAGAGCCGGGCACGAGGTCGAAGAAGGAGGTGACTGAGGATGGACACCGTGTTATTTGCAAGCTATCTAACAGGAAAACTGTGGTGATTAACGATTTCAAAGAGAAAACTTACGTGTCCTTCAGAGAATTTTATCAAAAAGATGGAAAGCAACTTCCTACTGCCAAAGGAATTAGCTTGCCAAGTGAACAATGGGCAGCGTTCAAAAAGAGTGTCCCTGCAATAGAGGAAGCCGTTAAAAAGATGGAATCAAAGATAAGATCTGAACTTGACAGTAAACGAACTGAAAATGGTAAGCAAACTGAAGATGGTAAGCAAACTGGAGACGGTGTGCAAACTGAAATCATGTCTAATTCATTAAATGGTATTGCTCCTCAACAACTTGTTACCATTGAGACTAGCCGTTTTGATGGGAAAAACTACCCATTCTGGGTGGAACAGATGGAGCTTCAGTTGAAGCAATTAAAGATTGCATATGTGCTCTTTGAGCCATGCCCAAGCAGTATGCTTGGCCCGGAAGCAAGTAGTGAAGAAATTGCTCATTCAAAGGCTGCTGACCGGAAATGGGTGAATGATGATTCCGTGTGTCGTCGTGGCATCTTAAACGCTCTTTCTGATGATCTGTTTTATCTTTACTCAAAGAAAACCATGACTGCTAAAGAGCTGTGGGAAGATCTAAAGCTAATATATCTTTTTGAGCAATTTGGAACAGATAGAACTCGAGTTAAAAAGTACATTGAATTTGTGATGCTCGAGGGGAAATCAATTGTGGAGCAAGTTGAAAATTTTAATAGGCTTGCTGATTCCATTGTGGGTTCTGGAATGATGATTGAGGAAAAATTTCATGTCAGTGTCATCATCTCCAAACTCCCCCCGTCTTGGAAGGATGTGTGCATTAAGTTGATGCGTGAGGAACATCTACCTTTTGCAATGTTGATGGAACGTTTGAGGGTTGAAGAAGAGATGCGTGTTAGGGAGAACCAGGGAGCACCTTTTAACCTAGTAGGTGATCTAGCAAGGAAGTATGCACCAAGGCAAAGAGATATGAAGCCGCGAAGTATGCAATGGAAGAGGCAAGAATTGGAGACAAATGGCAAAGTTATTTGCCAAGTTTGTGGCAAGAAGGGGCACATCTCTCAACATTGTCGTTATCGTAACAGGAAGGATGACAAGGAAGGTAATGATAAGGACCATGAGGGAAATGGATCAATGCCTACAAGTATGGAGGTCAACATGTCTGAGAGGGCAGCGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DEK_C PC4 Retrotran_gag_2

Protein Analysis

498

Amino Acids

57.44

Weight (kDa)

6.77

Isoelectric Point (pI)

49.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00980
fragaria_vesca FvH4_1g25682 FvH4_2g13961 FvH4_2g20162 FvH4_2g24753 FvH4_3g12191 FvH4_3g12632 FvH4_3g16171 FvH4_4g05871 FvH4_4g05873 FvH4_4g10121 FvH4_4g15488 FvH4_4g23911 FvH4_4g27782 FvH4_5g08912 FvH4_5g23001 FvH4_5g24552 FvH4_5g32801 FvH4_5g32802 FvH4_6g05093 FvH4_6g19722 FvH4_6g20391 FvH4_6g33792 FvH4_7g01381 FvH4_7g16761 FvH4_7g16761 FvH4_7g16761
malus_domestica MD01G1082500.v1.1 MD15G1436400.v1.1
prunus_persica Prupe.2G021400_v2.0.a1 Prupe.2G052400_v2.0.a1 Prupe.2G065000_v2.0.a1 Prupe.2G187700_v2.0.a1 Prupe.2G187800_v2.0.a1 Prupe.2G189900_v2.0.a1 Prupe.2G191300_v2.0.a1 Prupe.2G191700_v2.0.a1 Prupe.4G265600_v2.0.a1 Prupe.7G014200_v2.0.a1 Prupe.7G039000_v2.0.a1
pyrus_communis pycom01g05590 pycom01g05910 pycom02g12230 pycom02g25840 pycom03g15580 pycom04g04480 pycom05g09230 pycom05g23350 pycom05g23360 pycom07g08380 pycom09g01980 pycom09g01990 pycom11g18190 pycom11g18200 pycom11g21580 pycom13g04160 pycom15g25800 pycom16g16210 pycom16g17230 pycom16g24560 pycom16g25700 pycom17g11020
rosa_chinensis RchiOBHm_Chr1g0359981 RchiOBHm_Chr2g0151961 RchiOBHm_Chr2g0171331 RchiOBHm_Chr5g0081471 RchiOBHm_Chr6g0283031 RchiOBHm_Chr7g0197111 RchiOBHm_Chr7g0222601
rosa_laevigata RLG00000027843 RLG00000027845 RLG00000030065
rosa_multiflora Rmu_sc0000381.1_g000031 Rmu_sc0001179.1_g000035 Rmu_sc0001616.1_g000046 Rmu_sc0001851.1_g000032 Rmu_sc0002152.1_g000013 Rmu_sc0004031.1_g000015 Rmu_sc0004645.1_g000003 Rmu_sc0007393.1_g000001 Rmu_sc0008949.1_g000003 Rmu_sc0009799.1_g000011 Rmu_sc0011614.1_g000001 Rmu_sc0011699.1_g000009 Rmu_sc0019280.1_g000001 Rmu_sc0023984.1_g000001 Rmu_ssc0000050.1_g000036
rosa_roxburghii Rroxscaffold_1G00022650 Rroxscaffold_1G00033480 Rroxscaffold_3G00270250 Rroxscaffold_4G00296600 Rroxscaffold_4G00296760 Rroxscaffold_6G00409840
rosa_rugosa Rorug01G0273800 Rorug01G0273900 Rorug01G0274000
rosa_samantha Rh1AG287300 Rh1AG288100 Rh1BG253000 Rh1BG253500 Rh1BG399800 Rh1CG270400 Rh1CG271000 Rh1DG282000 Rh1DG282500 Rh4DG126500 Rh5DG194600 Rh5DG461100
rosa_wichuraiana Rw0G009130 Rw1G002590 Rw1G008490 Rw1G012210 Rw1G014290 Rw1G014490 Rw1G025510 Rw2G025840 Rw2G026170 Rw2G036510 Rw3G003050 Rw4G009270 Rw5G002350 Rw5G013930 Rw5G019500 Rw5G025890 Rw5G029960 Rw5G032360 Rw6G009890 Rw6G015670 Rw6G015860 Rw7G010030 Rw7G032600 Rw7G032770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 16
AccII CGCG 1 cut(s) 1291
AccIII TCCGGA 1 cut(s) 187
AciI CCGC 2 cut(s) 1289, 1487
AclI AACGTT 1 cut(s) 1180
AclWI GGATC 1 cut(s) 1450
AcsI RAATTY 4 cut(s) 365, 977, 1021, 1076
AcuI CTGAAG 3 cut(s) 343, 561, 671
AfaI GTAC 1 cut(s) 971
AfiI CCNNNNNNNGG 3 cut(s) 667, 802, 1116
AflIII ACRYGT 2 cut(s) 351, 1470
AgsI TTSAA 8 cut(s) 85, 337, 442, 694, 783, 977, 1019, 1193
AjnI CCWGG 1 cut(s) 1218
AjuI GAANNNNNNNTTGG 2 cut(s) 47, 79
AluBI AGCT 7 cut(s) 147, 217, 301, 414, 685, 901, 919
AluI AGCT 7 cut(s) 147, 217, 301, 414, 685, 901, 919
Alw21I GWGCWC 4 cut(s) 141, 219, 720, 1228
Alw26I GTCTC 5 cut(s) 189, 218, 555, 626, 1316
AlwI GGATC 1 cut(s) 1450
Ama87I CYCGRG 3 cut(s) 207, 957, 989
Aor13HI TCCGGA 1 cut(s) 187
AoxI GGCC 1 cut(s) 748
ApeKI GCWGC 3 cut(s) 434, 788, 1484
ApoI RAATTY 4 cut(s) 365, 977, 1021, 1076
ArsI GACNNNNNNTTYG 2 cut(s) 435, 467
Asp700I GAANNNNTTC 1 cut(s) 1077
AspS9I GGNCC 2 cut(s) 749, 1426
AsuC2I CCSGG 2 cut(s) 246, 752
AsuHPI GGTGA 5 cut(s) 211, 280, 334, 817, 1256
AvaI CYCGRG 3 cut(s) 207, 957, 989
AvaII GGWCC 1 cut(s) 1426
BaeGI GKGCMC 2 cut(s) 251, 1368
BanII GRGCYC 2 cut(s) 195, 219
BauI CACGAG 1 cut(s) 250
Bbv12I GWGCWC 4 cut(s) 141, 219, 720, 1228
BbvI GCAGC 2 cut(s) 446, 775
BccI CCATC 7 cut(s) 272, 374, 475, 539, 641, 673, 1168
BceAI ACGGC 2 cut(s) 455, 624
BciT130I CCWGG 1 cut(s) 1220
BciVI GTATCC 1 cut(s) 25
BcnI CCSGG 2 cut(s) 246, 752
BcoDI GTCTC 5 cut(s) 189, 218, 555, 626, 1316
BfaI CTAG 3 cut(s) 636, 1238, 1250
BfuI GTATCC 1 cut(s) 25
BglII AGATCT 2 cut(s) 497, 910
BisI GCNGC 4 cut(s) 435, 789, 1289, 1485
BlsI GCNGC 4 cut(s) 436, 790, 1290, 1486
Bme1390I CCNGG 3 cut(s) 246, 752, 1220
Bme18I GGWCC 1 cut(s) 1426
BmeT110I CYCGRG 3 cut(s) 207, 957, 989
BmgT120I GGNCC 2 cut(s) 749, 1426
BmiI GGNNCC 2 cut(s) 173, 192
BmrFI CCNGG 3 cut(s) 246, 752, 1220
BmsI GCATC 4 cut(s) 843, 975, 1131, 1191
BpmI CTGGAG 1 cut(s) 579
BpuMI CCSGG 2 cut(s) 246, 752
Bsa29I ATCGAT 1 cut(s) 120
BsaAI YACGTR 1 cut(s) 352
BsaJI CCNNGG 4 cut(s) 102, 195, 1219, 1268
BsaWI WCCGGW 2 cut(s) 187, 795
BsaXI ACNNNNNCTCC 4 cut(s) 552, 582, 674, 704
Bsc4I CCNNNNNNNGG 3 cut(s) 667, 802, 1116
Bse1I ACTGG 1 cut(s) 562
Bse3DI GCAATG 2 cut(s) 1173, 1307
BseAI TCCGGA 1 cut(s) 187
BseBI CCWGG 1 cut(s) 1220
BseCI ATCGAT 1 cut(s) 120
BseDI CCNNGG 4 cut(s) 102, 195, 1219, 1268
BseGI GGATG 3 cut(s) 283, 1129, 1408
BseLI CCNNNNNNNGG 3 cut(s) 667, 802, 1116
BseMI GCAATG 2 cut(s) 1173, 1307
BseMII CTCAG 3 cut(s) 69, 264, 1467
BseNI ACTGG 1 cut(s) 562
BseRI GAGGAG 3 cut(s) 83, 227, 600
BseSI GKGCMC 2 cut(s) 251, 1368
BseXI GCAGC 2 cut(s) 446, 775
Bsh1236I CGCG 1 cut(s) 1291
BshFI GGCC 1 cut(s) 750
BshVI ATCGAT 1 cut(s) 120
BsiHKAI GWGCWC 4 cut(s) 141, 219, 720, 1228
BsiHKCI CYCGRG 3 cut(s) 207, 957, 989
BsiSI CCGG 4 cut(s) 188, 245, 752, 796
BslFI GGGAC 1 cut(s) 437
BslI CCNNNNNNNGG 3 cut(s) 667, 802, 1116
BsmAI GTCTC 5 cut(s) 189, 218, 555, 626, 1316
BsmBI CGTCTC 3 cut(s) 189, 218, 555
BsmFI GGGAC 1 cut(s) 437
BsnI GGCC 1 cut(s) 750
BsoBI CYCGRG 3 cut(s) 207, 957, 989
Bsp1286I GDGCHC 7 cut(s) 141, 195, 219, 251, 720, 1228, 1368
Bsp13I TCCGGA 1 cut(s) 187
Bsp143I GATC 6 cut(s) 162, 497, 856, 910, 1246, 1442
BspACI CCGC 2 cut(s) 1289, 1487
BspANI GGCC 1 cut(s) 750
BspCNI CTCAG 3 cut(s) 70, 265, 1468
BspDI ATCGAT 1 cut(s) 120
BspEI TCCGGA 1 cut(s) 187
BspFNI CGCG 1 cut(s) 1291
BspLI GGNNCC 2 cut(s) 173, 192
BspPI GGATC 1 cut(s) 1450
BspQI GCTCTTC 1 cut(s) 234
BsrDI GCAATG 2 cut(s) 1173, 1307
BsrI ACTGG 1 cut(s) 562
BssECI CCNNGG 4 cut(s) 102, 195, 1219, 1268
BssMI GATC 6 cut(s) 162, 497, 856, 910, 1246, 1442
BssSI CACGAG 1 cut(s) 250
BssT1I CCWWGG 2 cut(s) 195, 1268
Bst2BI CACGAG 1 cut(s) 250
Bst2UI CCWGG 1 cut(s) 1220
Bst4CI ACNGT 5 cut(s) 37, 287, 319, 512, 566
Bst6I CTCTTC 3 cut(s) 234, 1191, 1301
BstBAI YACGTR 1 cut(s) 352
BstC8I GCNNGC 3 cut(s) 299, 416, 1035
BstDEI CTNAG 3 cut(s) 78, 273, 1476
BstEII GGTNACC 1 cut(s) 97
BstF5I GGATG 3 cut(s) 283, 1129, 1408
BstFNI CGCG 1 cut(s) 1291
BstKTI GATC 6 cut(s) 165, 500, 859, 913, 1249, 1445
BstMAI GTCTC 5 cut(s) 189, 218, 555, 626, 1316
BstMBI GATC 6 cut(s) 162, 497, 856, 910, 1246, 1442
BstMWI GCNNNNNNNGC 3 cut(s) 241, 724, 1297
BstNI CCWGG 1 cut(s) 1220
BstNSI RCATGY 1 cut(s) 1474
BstPI GGTNACC 1 cut(s) 97
BstSCI CCNGG 3 cut(s) 244, 750, 1218
BstSLI GKGCMC 2 cut(s) 251, 1368
BstUI CGCG 1 cut(s) 1291
BstV1I GCAGC 2 cut(s) 446, 775
BstX2I RGATCY 2 cut(s) 497, 910
BstXI CCANNNNNNTGG 1 cut(s) 1352
BstYI RGATCY 2 cut(s) 497, 910
Bsu15I ATCGAT 1 cut(s) 120
BsuI GTATCC 1 cut(s) 25
BsuRI GGCC 1 cut(s) 750
BsuTUI ATCGAT 1 cut(s) 120
BtsCI GGATG 3 cut(s) 283, 1129, 1408
BtsIMutI CAGTG 1 cut(s) 1093
Cac8I GCNNGC 3 cut(s) 299, 416, 1035
Cfr13I GGNCC 2 cut(s) 749, 1426
ClaI ATCGAT 1 cut(s) 120
Csp6I GTAC 1 cut(s) 970
CviAII CATG 7 cut(s) 220, 583, 729, 886, 1082, 1430, 1471
CviQI GTAC 1 cut(s) 970
DdeI CTNAG 3 cut(s) 78, 273, 1476
DpnI GATC 6 cut(s) 164, 499, 858, 912, 1248, 1444
DpnII GATC 6 cut(s) 162, 497, 856, 910, 1246, 1442
Eam1104I CTCTTC 3 cut(s) 234, 1191, 1301
EarI CTCTTC 3 cut(s) 234, 1191, 1301
Ecl136II GAGCTC 1 cut(s) 217
Eco130I CCWWGG 2 cut(s) 195, 1268
Eco24I GRGCYC 2 cut(s) 195, 219
Eco47I GGWCC 1 cut(s) 1426
Eco53kI GAGCTC 1 cut(s) 217
Eco57I CTGAAG 3 cut(s) 343, 561, 671
Eco88I CYCGRG 3 cut(s) 207, 957, 989
Eco91I GGTNACC 1 cut(s) 97
EcoICRI GAGCTC 1 cut(s) 217
EcoO65I GGTNACC 1 cut(s) 97
EcoRII CCWGG 1 cut(s) 1218
EcoT14I CCWWGG 2 cut(s) 195, 1268
EcoT38I GRGCYC 2 cut(s) 195, 219
ErhI CCWWGG 2 cut(s) 195, 1268
Esp3I CGTCTC 3 cut(s) 189, 218, 555
FaeI CATG 7 cut(s) 223, 586, 732, 889, 1085, 1433, 1474
FaqI GGGAC 1 cut(s) 437
FatI CATG 7 cut(s) 219, 582, 728, 885, 1081, 1429, 1470
FauNDI CATATG 1 cut(s) 712
FblI GTMKAC 1 cut(s) 16
Fnu4HI GCNGC 4 cut(s) 435, 789, 1289, 1485
FokI GGATG 3 cut(s) 290, 1136, 1415
FriOI GRGCYC 2 cut(s) 195, 219
Fsp4HI GCNGC 4 cut(s) 435, 789, 1289, 1485
FspBI CTAG 3 cut(s) 636, 1238, 1250
GluI GCNGC 4 cut(s) 435, 789, 1289, 1485
GsuI CTGGAG 1 cut(s) 579
HaeIII GGCC 1 cut(s) 750
HapII CCGG 4 cut(s) 188, 245, 752, 796
Hin1II CATG 7 cut(s) 223, 586, 732, 889, 1085, 1433, 1474
HincII GTYRAC 2 cut(s) 17, 1468
HindII GTYRAC 2 cut(s) 17, 1468
HinfI GANTC 5 cut(s) 5, 117, 485, 815, 1040
HpaII CCGG 4 cut(s) 188, 245, 752, 796
HphI GGTGA 5 cut(s) 211, 280, 334, 817, 1256
Hpy166II GTNNAC 5 cut(s) 17, 202, 425, 515, 1468
Hpy188I TCNGA 8 cut(s) 10, 92, 106, 130, 362, 502, 853, 1477
Hpy188III TCNNGA 4 cut(s) 151, 188, 209, 1056
Hpy8I GTNNAC 5 cut(s) 17, 202, 425, 515, 1468
Hpy99I CGWCG 2 cut(s) 21, 831
HpyAV CCTTC 6 cut(s) 256, 367, 1114, 1354, 1393, 1406
HpyCH4III ACNGT 5 cut(s) 37, 287, 319, 512, 566
HpyCH4IV ACGT 2 cut(s) 351, 1180
HpyCH4V TGCA 9 cut(s) 235, 297, 458, 571, 710, 1131, 1166, 1265, 1300
HpyF10VI GCNNNNNNNGC 3 cut(s) 241, 724, 1297
HpyF3I CTNAG 3 cut(s) 78, 273, 1476
HpySE526I ACGT 2 cut(s) 351, 1180
Hsp92II CATG 7 cut(s) 223, 586, 732, 889, 1085, 1433, 1474
Kpn2I TCCGGA 1 cut(s) 187
Kzo9I GATC 6 cut(s) 162, 497, 856, 910, 1246, 1442
LguI GCTCTTC 1 cut(s) 234
LmnI GCTCC 7 cut(s) 106, 190, 214, 613, 682, 1009, 1223
Lsp1109I GCAGC 2 cut(s) 446, 775
LweI GCATC 4 cut(s) 843, 975, 1131, 1191
MaeI CTAG 3 cut(s) 636, 1238, 1250
MaeII ACGT 2 cut(s) 351, 1180
MaeIII GTNAC 4 cut(s) 97, 268, 622, 1391
MalI GATC 6 cut(s) 164, 499, 858, 912, 1248, 1444
MboI GATC 6 cut(s) 162, 497, 856, 910, 1246, 1442
MboII GAAGA 8 cut(s) 251, 271, 554, 779, 920, 1205, 1208, 1318
MfeI CAATTG 1 cut(s) 1002
MflI RGATCY 2 cut(s) 497, 910
MhlI GDGCHC 7 cut(s) 141, 195, 219, 251, 720, 1228, 1368
MroI TCCGGA 1 cut(s) 187
MroXI GAANNNNTTC 1 cut(s) 1077
MseI TTAA 9 cut(s) 327, 474, 596, 701, 839, 963, 1026, 1134, 1233
MslI CAYNNNNRTG 1 cut(s) 1086
MspA1I CMGCKG 1 cut(s) 1487
MspI CCGG 4 cut(s) 188, 245, 752, 796
MspR9I CCNGG 3 cut(s) 246, 752, 1220
MunI CAATTG 1 cut(s) 1002
MvaI CCWGG 1 cut(s) 1220
MvnI CGCG 1 cut(s) 1291
MwoI GCNNNNNNNGC 3 cut(s) 241, 724, 1297
NciI CCSGG 2 cut(s) 246, 752
NdeI CATATG 1 cut(s) 712
NdeII GATC 6 cut(s) 162, 497, 856, 910, 1246, 1442
NlaIII CATG 7 cut(s) 223, 586, 732, 889, 1085, 1433, 1474
NlaIV GGNNCC 2 cut(s) 173, 192
NmuCI GTSAC 1 cut(s) 268
NspI RCATGY 1 cut(s) 1474
PaeR7I CTCGAG 2 cut(s) 957, 989
PciI ACATGT 1 cut(s) 1470
PciSI GCTCTTC 1 cut(s) 234
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PdmI GAANNNNTTC 1 cut(s) 1077
PfeI GAWTC 4 cut(s) 117, 485, 815, 1040
PkrI GCNGC 4 cut(s) 436, 790, 1290, 1486
Ppu21I YACGTR 1 cut(s) 352
PscI ACATGT 1 cut(s) 1470
Psp124BI GAGCTC 1 cut(s) 219
Psp1406I AACGTT 1 cut(s) 1180
Psp6I CCWGG 1 cut(s) 1218
PspEI GGTNACC 1 cut(s) 97
PspGI CCWGG 1 cut(s) 1218
PspN4I GGNNCC 2 cut(s) 173, 192
PspPI GGNCC 2 cut(s) 749, 1426
PspXI VCTCGAGB 2 cut(s) 957, 989
PsuI RGATCY 2 cut(s) 497, 910
RsaI GTAC 1 cut(s) 971
RsaNI GTAC 1 cut(s) 970
RseI CAYNNNNRTG 1 cut(s) 1086
SacI GAGCTC 1 cut(s) 219
SalI GTCGAC 1 cut(s) 15
SapI GCTCTTC 1 cut(s) 234
SaqAI TTAA 9 cut(s) 327, 474, 596, 701, 839, 963, 1026, 1134, 1233
SatI GCNGC 4 cut(s) 435, 789, 1289, 1485
Sau3AI GATC 6 cut(s) 162, 497, 856, 910, 1246, 1442
Sau96I GGNCC 2 cut(s) 749, 1426
ScrFI CCNGG 3 cut(s) 246, 752, 1220
SduI GDGCHC 7 cut(s) 141, 195, 219, 251, 720, 1228, 1368
SfaNI GCATC 4 cut(s) 843, 975, 1131, 1191
Sfr274I CTCGAG 2 cut(s) 957, 989
SinI GGWCC 1 cut(s) 1426
SlaI CTCGAG 2 cut(s) 957, 989
SmiMI CAYNNNNRTG 1 cut(s) 1086
SmlI CTYRAG 2 cut(s) 957, 989
SmoI CTYRAG 2 cut(s) 957, 989
SsiI CCGC 2 cut(s) 1289, 1487
SspMI CTAG 3 cut(s) 636, 1238, 1250
SstI GAGCTC 1 cut(s) 219
StyD4I CCNGG 3 cut(s) 244, 750, 1218
StyI CCWWGG 2 cut(s) 195, 1268
TaaI ACNGT 5 cut(s) 37, 287, 319, 512, 566
TaiI ACGT 2 cut(s) 354, 1183
TaqI TCGA 7 cut(s) 16, 27, 120, 165, 257, 958, 990
TatI WGTACW 1 cut(s) 969
TauI GCSGC 1 cut(s) 1291
TfiI GAWTC 4 cut(s) 117, 485, 815, 1040
Tru1I TTAA 9 cut(s) 327, 474, 596, 701, 839, 963, 1026, 1134, 1233
Tru9I TTAA 9 cut(s) 327, 474, 596, 701, 839, 963, 1026, 1134, 1233
TscAI CASTG 1 cut(s) 1093
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 3 cut(s) 434, 788, 1484
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 3 cut(s) 582, 1070, 1298
TspGWI ACGGA 2 cut(s) 34, 808
TspRI CASTG 1 cut(s) 1093
VpaK11BI GGWCC 1 cut(s) 1426
XapI RAATTY 4 cut(s) 365, 977, 1021, 1076
XceI RCATGY 1 cut(s) 1474
XcmI CCANNNNNNNNNTGG 2 cut(s) 426, 1436
XhoI CTCGAG 2 cut(s) 957, 989
XmiI GTMKAC 1 cut(s) 16
XmnI GAANNNNTTC 1 cut(s) 1077
XspI CTAG 3 cut(s) 636, 1238, 1250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.