pycom01g05590
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Reverse (-)
5437453 .. 5438050
598 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g05590.1

Sequence Viewer

Length: 537 bp
ATGACATCAGAAATCAACGTAGTTGATGGATCTGAGGGATGCTGGGTAGACACTGGCGCTTCTCACCATGTTTGCTATGATCGTTCCCTTTTCAAGACCTATTCTGTGGCTGAGGGAAGGAAGGTCTTGTTGGGTGATTCGCACTCAACTGATATTGTTGGTACTGGAGAGGTGGAGTTGAAGTTCACCTCTGGAAAAACCAAGATACTGAAAGATGTGATGCACGCTCCGGCGATAAGGAAGAATCTTGTCTCGGTCTTTCTTCTCAACAAGGCTGGATTCACTCAAACGTTTGGAGCAGATACGTATACTCTTACTAAAAATGGGGTTTTTATGGGAAAAGGATATGCTACTGATGGAATGTTTAAATTGAATGTTGATAAAATGTCTACTTCTGCTTACATGTTGTCTTCTTTTAATACTTGGCATGCTAGACTTTGTCATGTGAACAAACGCCTGGTTAAGACCATGATCAAGCTAAAATCACTAGAACTTCGCATAAATCTGTCAATAGAGAATATGAACCACTTGACTTAA

Protein Analysis

179

Amino Acids

19.78

Weight (kDa)

9.24

Isoelectric Point (pI)

26.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pol_BBD PF22936 15 - 94 2.6e-23 Pol polyprotein, beta-barrel domain
gag_pre-integrs PF13976 122 - 163 2.1e-06 GAG-pre-integrase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00980
fragaria_vesca FvH4_1g25682 FvH4_2g13961 FvH4_2g20162 FvH4_2g24753 FvH4_3g12191 FvH4_3g12632 FvH4_3g16171 FvH4_4g05871 FvH4_4g05873 FvH4_4g10121 FvH4_4g15488 FvH4_4g23911 FvH4_4g27782 FvH4_5g08912 FvH4_5g23001 FvH4_5g24552 FvH4_5g32801 FvH4_5g32802 FvH4_6g05093 FvH4_6g19722 FvH4_6g20391 FvH4_6g33792 FvH4_7g01381 FvH4_7g16761 FvH4_7g16761 FvH4_7g16761
malus_domestica MD01G1082500.v1.1 MD15G1436400.v1.1
prunus_persica Prupe.2G021400_v2.0.a1 Prupe.2G052400_v2.0.a1 Prupe.2G065000_v2.0.a1 Prupe.2G187700_v2.0.a1 Prupe.2G187800_v2.0.a1 Prupe.2G189900_v2.0.a1 Prupe.2G191300_v2.0.a1 Prupe.2G191700_v2.0.a1 Prupe.4G265600_v2.0.a1 Prupe.7G014200_v2.0.a1 Prupe.7G039000_v2.0.a1
pyrus_communis pycom01g05590 pycom01g05910 pycom02g12230 pycom02g25840 pycom03g15580 pycom04g04480 pycom05g09230 pycom05g23350 pycom05g23360 pycom07g08380 pycom09g01980 pycom09g01990 pycom11g18190 pycom11g18200 pycom11g21580 pycom13g04160 pycom15g25800 pycom16g16210 pycom16g17230 pycom16g24560 pycom16g25700 pycom17g11020
rosa_chinensis RchiOBHm_Chr1g0359981 RchiOBHm_Chr2g0151961 RchiOBHm_Chr2g0171331 RchiOBHm_Chr5g0081471 RchiOBHm_Chr6g0283031 RchiOBHm_Chr7g0197111 RchiOBHm_Chr7g0222601
rosa_laevigata RLG00000027843 RLG00000027845 RLG00000030065
rosa_multiflora Rmu_sc0000381.1_g000031 Rmu_sc0001179.1_g000035 Rmu_sc0001616.1_g000046 Rmu_sc0001851.1_g000032 Rmu_sc0002152.1_g000013 Rmu_sc0004031.1_g000015 Rmu_sc0004645.1_g000003 Rmu_sc0007393.1_g000001 Rmu_sc0008949.1_g000003 Rmu_sc0009799.1_g000011 Rmu_sc0011614.1_g000001 Rmu_sc0011699.1_g000009 Rmu_sc0019280.1_g000001 Rmu_sc0023984.1_g000001 Rmu_ssc0000050.1_g000036
rosa_roxburghii Rroxscaffold_1G00022650 Rroxscaffold_1G00033480 Rroxscaffold_3G00270250 Rroxscaffold_4G00296600 Rroxscaffold_4G00296760 Rroxscaffold_6G00409840
rosa_rugosa Rorug01G0273800 Rorug01G0273900 Rorug01G0274000
rosa_samantha Rh1AG287300 Rh1AG288100 Rh1BG253000 Rh1BG253500 Rh1BG399800 Rh1CG270400 Rh1CG271000 Rh1DG282000 Rh1DG282500 Rh4DG126500 Rh5DG194600 Rh5DG461100
rosa_wichuraiana Rw0G009130 Rw1G002590 Rw1G008490 Rw1G012210 Rw1G014290 Rw1G014490 Rw1G025510 Rw2G025840 Rw2G026170 Rw2G036510 Rw3G003050 Rw4G009270 Rw5G002350 Rw5G013930 Rw5G019500 Rw5G025890 Rw5G029960 Rw5G032360 Rw6G009890 Rw6G015670 Rw6G015860 Rw7G010030 Rw7G032600 Rw7G032770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 48, 308, 389
AclI AACGTT 1 cut(s) 290
AclWI GGATC 1 cut(s) 37
AfaI GTAC 1 cut(s) 163
AflIII ACRYGT 1 cut(s) 402
AgsI TTSAA 3 cut(s) 94, 181, 373
AjnI CCWGG 1 cut(s) 456
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
AloI GAACNNNNNNTCC 2 cut(s) 167, 199
AluBI AGCT 1 cut(s) 478
AluI AGCT 1 cut(s) 478
Alw26I GTCTC 1 cut(s) 256
AlwI GGATC 1 cut(s) 37
AspLEI GCGC 1 cut(s) 59
AsuHPI GGTGA 3 cut(s) 56, 146, 178
BbsI GAAGAC 1 cut(s) 402
BbvCI CCTCAGC 1 cut(s) 111
BccI CCATC 2 cut(s) 20, 350
BciT130I CCWGG 1 cut(s) 458
BclI TGATCA 1 cut(s) 471
BcoDI GTCTC 1 cut(s) 256
BfaI CTAG 2 cut(s) 432, 488
BfoI RGCGCY 1 cut(s) 60
Bme1390I CCNGG 1 cut(s) 458
BmrFI CCNGG 1 cut(s) 458
BmsI GCATC 2 cut(s) 29, 210
BpiI GAAGAC 1 cut(s) 402
BpmI CTGGAG 1 cut(s) 186
Bpu10I CCTNAGC 1 cut(s) 111
BsaAI YACGTR 1 cut(s) 306
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bse1I ACTGG 2 cut(s) 58, 169
BseBI CCWGG 1 cut(s) 458
BseGI GGATG 1 cut(s) 44
BseMII CTCAG 2 cut(s) 24, 102
BseNI ACTGG 2 cut(s) 58, 169
BseYI CCCAGC 1 cut(s) 42
BsiSI CCGG 1 cut(s) 230
BsmAI GTCTC 1 cut(s) 256
Bsp143I GATC 3 cut(s) 29, 79, 471
BspCNI CTCAG 2 cut(s) 25, 103
BspPI GGATC 1 cut(s) 37
BsrI ACTGG 2 cut(s) 58, 169
BssMI GATC 3 cut(s) 29, 79, 471
BssNAI GTATAC 1 cut(s) 309
Bst1107I GTATAC 1 cut(s) 309
Bst2UI CCWGG 1 cut(s) 458
BstBAI YACGTR 1 cut(s) 306
BstC8I GCNNGC 2 cut(s) 225, 429
BstDEI CTNAG 2 cut(s) 33, 111
BstF5I GGATG 1 cut(s) 44
BstH2I RGCGCY 1 cut(s) 60
BstHHI GCGC 1 cut(s) 59
BstKTI GATC 3 cut(s) 32, 82, 474
BstMAI GTCTC 1 cut(s) 256
BstMBI GATC 3 cut(s) 29, 79, 471
BstNI CCWGG 1 cut(s) 458
BstNSI RCATGY 2 cut(s) 406, 431
BstSCI CCNGG 1 cut(s) 456
BstSNI TACGTA 1 cut(s) 306
BstV2I GAAGAC 1 cut(s) 402
BstX2I RGATCY 1 cut(s) 29
BstYI RGATCY 1 cut(s) 29
BstZ17I GTATAC 1 cut(s) 309
BtsCI GGATG 1 cut(s) 44
BtsIMutI CAGTG 1 cut(s) 51
Cac8I GCNNGC 2 cut(s) 225, 429
CfoI GCGC 1 cut(s) 59
Csp6I GTAC 1 cut(s) 162
CviAII CATG 5 cut(s) 68, 403, 428, 443, 469
CviJI RGCY 3 cut(s) 110, 275, 478
CviKI_1 RGCY 3 cut(s) 110, 275, 478
CviQI GTAC 1 cut(s) 162
DdeI CTNAG 2 cut(s) 33, 111
DpnI GATC 3 cut(s) 31, 81, 473
DpnII GATC 3 cut(s) 29, 79, 471
DraI TTTAAA 1 cut(s) 367
Eco105I TACGTA 1 cut(s) 306
EcoRII CCWGG 1 cut(s) 456
FaeI CATG 5 cut(s) 71, 406, 431, 446, 472
FatI CATG 5 cut(s) 67, 402, 427, 442, 468
FbaI TGATCA 1 cut(s) 471
FblI GTMKAC 3 cut(s) 48, 308, 389
FokI GGATG 1 cut(s) 51
FspBI CTAG 2 cut(s) 432, 488
GlaI GCGC 1 cut(s) 58
GsaI CCCAGC 1 cut(s) 46
GsuI CTGGAG 1 cut(s) 186
HaeII RGCGCY 1 cut(s) 60
HapII CCGG 1 cut(s) 230
HhaI GCGC 1 cut(s) 59
Hin1II CATG 5 cut(s) 71, 406, 431, 446, 472
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HinfI GANTC 3 cut(s) 137, 244, 279
HpaII CCGG 1 cut(s) 230
HphI GGTGA 3 cut(s) 56, 146, 178
Hpy166II GTNNAC 5 cut(s) 49, 186, 309, 390, 448
Hpy188I TCNGA 2 cut(s) 10, 34
Hpy188III TCNNGA 2 cut(s) 94, 192
Hpy8I GTNNAC 5 cut(s) 49, 186, 309, 390, 448
HpyAV CCTTC 2 cut(s) 111, 115
HpyCH4IV ACGT 3 cut(s) 18, 290, 305
HpyCH4V TGCA 1 cut(s) 223
HpyF3I CTNAG 2 cut(s) 33, 111
HpySE526I ACGT 3 cut(s) 18, 290, 305
Hsp92II CATG 5 cut(s) 71, 406, 431, 446, 472
HspAI GCGC 1 cut(s) 57
Ksp22I TGATCA 1 cut(s) 471
Kzo9I GATC 3 cut(s) 29, 79, 471
LmnI GCTCC 2 cut(s) 232, 296
LpnPI CCDG 8 cut(s) 28, 39, 150, 177, 243, 261, 443, 470
LweI GCATC 2 cut(s) 29, 210
MaeI CTAG 2 cut(s) 432, 488
MaeII ACGT 3 cut(s) 18, 290, 305
MalI GATC 3 cut(s) 31, 81, 473
MboI GATC 3 cut(s) 29, 79, 471
MboII GAAGA 3 cut(s) 253, 254, 402
MflI RGATCY 1 cut(s) 29
MluCI AATT 1 cut(s) 368
MnlI CCTC 4 cut(s) 28, 106, 163, 199
MseI TTAA 4 cut(s) 366, 417, 462, 535
MspI CCGG 1 cut(s) 230
MspR9I CCNGG 1 cut(s) 458
MvaI CCWGG 1 cut(s) 458
NdeII GATC 3 cut(s) 29, 79, 471
NlaIII CATG 5 cut(s) 71, 406, 431, 446, 472
NspI RCATGY 2 cut(s) 406, 431
PaeI GCATGC 1 cut(s) 431
PciI ACATGT 1 cut(s) 402
PfeI GAWTC 3 cut(s) 137, 244, 279
PflFI GACNNNGTC 1 cut(s) 438
Ppu21I YACGTR 1 cut(s) 306
PscI ACATGT 1 cut(s) 402
Psp1406I AACGTT 1 cut(s) 290
Psp6I CCWGG 1 cut(s) 456
PspFI CCCAGC 1 cut(s) 42
PspGI CCWGG 1 cut(s) 456
PsuI RGATCY 1 cut(s) 29
PsyI GACNNNGTC 1 cut(s) 438
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
SaqAI TTAA 4 cut(s) 366, 417, 462, 535
Sau3AI GATC 3 cut(s) 29, 79, 471
ScrFI CCNGG 1 cut(s) 458
SetI ASST 8 cut(s) 21, 101, 126, 174, 191, 293, 308, 480
SfaNI GCATC 2 cut(s) 29, 210
SnaBI TACGTA 1 cut(s) 306
SphI GCATGC 1 cut(s) 431
Sse9I AATT 1 cut(s) 368
SspMI CTAG 2 cut(s) 432, 488
StyD4I CCNGG 1 cut(s) 456
TaiI ACGT 3 cut(s) 21, 293, 308
TaqII GACCGA 1 cut(s) 244
TasI AATT 1 cut(s) 368
TfiI GAWTC 3 cut(s) 137, 244, 279
Tru1I TTAA 4 cut(s) 366, 417, 462, 535
Tru9I TTAA 4 cut(s) 366, 417, 462, 535
TscAI CASTG 1 cut(s) 58
TspDTI ATGAA 1 cut(s) 536
TspRI CASTG 1 cut(s) 58
Tth111I GACNNNGTC 1 cut(s) 438
XceI RCATGY 2 cut(s) 406, 431
XmiI GTMKAC 3 cut(s) 48, 308, 389
XspI CTAG 2 cut(s) 432, 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.