Prupe.2G021400_v2.0.a1

gag-polypeptide of LTR copia-type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000258
Physical Location & Seq
Forward (+)
2093076 .. 2094374
1299 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G021400.1

Sequence Viewer

Length: 231 bp
ATGTGTGGGTATATCTTGAATCGCCTCGATGACACACTGTATGATGTTTATGCAGCATTCAAGACGGCTAGAGAAGTTTGGGAATCTCTTGAGAAAAAATATAAAAATAAAGATGCAGGATCCAAGAAATTTGGTGTAGACAGATTTCTGGTTTTCAAGATGGTAGAATCCAAACCTGTTGTCAAACAAGTTGAAGACCTCTGGAAAATTATCCATGAGATTCTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2

Protein Analysis

77

Amino Acids

8.96

Weight (kDa)

8.69

Isoelectric Point (pI)

34.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00980
fragaria_vesca FvH4_1g25682 FvH4_2g13961 FvH4_2g20162 FvH4_2g24753 FvH4_3g12191 FvH4_3g12632 FvH4_3g16171 FvH4_4g05871 FvH4_4g05873 FvH4_4g10121 FvH4_4g15488 FvH4_4g23911 FvH4_4g27782 FvH4_5g08912 FvH4_5g23001 FvH4_5g24552 FvH4_5g32801 FvH4_5g32802 FvH4_6g05093 FvH4_6g19722 FvH4_6g20391 FvH4_6g33792 FvH4_7g01381 FvH4_7g16761 FvH4_7g16761 FvH4_7g16761
malus_domestica MD01G1082500.v1.1 MD15G1436400.v1.1
prunus_persica Prupe.2G021400_v2.0.a1 Prupe.2G052400_v2.0.a1 Prupe.2G065000_v2.0.a1 Prupe.2G187700_v2.0.a1 Prupe.2G187800_v2.0.a1 Prupe.2G189900_v2.0.a1 Prupe.2G191300_v2.0.a1 Prupe.2G191700_v2.0.a1 Prupe.4G265600_v2.0.a1 Prupe.7G014200_v2.0.a1 Prupe.7G039000_v2.0.a1
pyrus_communis pycom01g05590 pycom01g05910 pycom02g12230 pycom02g25840 pycom03g15580 pycom04g04480 pycom05g09230 pycom05g23350 pycom05g23360 pycom07g08380 pycom09g01980 pycom09g01990 pycom11g18190 pycom11g18200 pycom11g21580 pycom13g04160 pycom15g25800 pycom16g16210 pycom16g17230 pycom16g24560 pycom16g25700 pycom17g11020
rosa_chinensis RchiOBHm_Chr1g0359981 RchiOBHm_Chr2g0151961 RchiOBHm_Chr2g0171331 RchiOBHm_Chr5g0081471 RchiOBHm_Chr6g0283031 RchiOBHm_Chr7g0197111 RchiOBHm_Chr7g0222601
rosa_laevigata RLG00000027843 RLG00000027845 RLG00000030065
rosa_multiflora Rmu_sc0000381.1_g000031 Rmu_sc0001179.1_g000035 Rmu_sc0001616.1_g000046 Rmu_sc0001851.1_g000032 Rmu_sc0002152.1_g000013 Rmu_sc0004031.1_g000015 Rmu_sc0004645.1_g000003 Rmu_sc0007393.1_g000001 Rmu_sc0008949.1_g000003 Rmu_sc0009799.1_g000011 Rmu_sc0011614.1_g000001 Rmu_sc0011699.1_g000009 Rmu_sc0019280.1_g000001 Rmu_sc0023984.1_g000001 Rmu_ssc0000050.1_g000036
rosa_roxburghii Rroxscaffold_1G00022650 Rroxscaffold_1G00033480 Rroxscaffold_3G00270250 Rroxscaffold_4G00296600 Rroxscaffold_4G00296760 Rroxscaffold_6G00409840
rosa_rugosa Rorug01G0273800 Rorug01G0273900 Rorug01G0274000
rosa_samantha Rh1AG287300 Rh1AG288100 Rh1BG253000 Rh1BG253500 Rh1BG399800 Rh1CG270400 Rh1CG271000 Rh1DG282000 Rh1DG282500 Rh4DG126500 Rh5DG194600 Rh5DG461100
rosa_wichuraiana Rw0G009130 Rw1G002590 Rw1G008490 Rw1G012210 Rw1G014290 Rw1G014490 Rw1G025510 Rw2G025840 Rw2G026170 Rw2G036510 Rw3G003050 Rw4G009270 Rw5G002350 Rw5G013930 Rw5G019500 Rw5G025890 Rw5G029960 Rw5G032360 Rw6G009890 Rw6G015670 Rw6G015860 Rw7G010030 Rw7G032600 Rw7G032770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 138
AclWI GGATC 2 cut(s) 114, 127
AcsI RAATTY 1 cut(s) 128
AgsI TTSAA 4 cut(s) 19, 61, 157, 194
AlwI GGATC 2 cut(s) 114, 127
ApeKI GCWGC 1 cut(s) 53
ApoI RAATTY 1 cut(s) 128
ArsI GACNNNNNNTTYG 2 cut(s) 165, 197
BamHI GGATCC 1 cut(s) 119
BbsI GAAGAC 1 cut(s) 201
BbvI GCAGC 1 cut(s) 65
BccI CCATC 1 cut(s) 154
BceAI ACGGC 1 cut(s) 81
BfaI CTAG 1 cut(s) 69
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 121
BmsI GCATC 1 cut(s) 103
BpiI GAAGAC 1 cut(s) 201
BpuEI CTTGAG 1 cut(s) 110
BseXI GCAGC 1 cut(s) 65
BsmI GAATGC 1 cut(s) 56
Bsp143I GATC 1 cut(s) 119
BspLI GGNNCC 1 cut(s) 121
BspPI GGATC 2 cut(s) 114, 127
BssMI GATC 1 cut(s) 119
Bst4CI ACNGT 1 cut(s) 39
BstKTI GATC 1 cut(s) 122
BstMBI GATC 1 cut(s) 119
BstV1I GCAGC 1 cut(s) 65
BstV2I GAAGAC 1 cut(s) 201
BstX2I RGATCY 1 cut(s) 119
BstYI RGATCY 1 cut(s) 119
BtsIMutI CAGTG 1 cut(s) 35
CviAII CATG 1 cut(s) 215
CviJI RGCY 1 cut(s) 68
CviKI_1 RGCY 1 cut(s) 68
DpnI GATC 1 cut(s) 121
DpnII GATC 1 cut(s) 119
FaeI CATG 1 cut(s) 218
FaiI YATR 5 cut(s) 12, 42, 51, 102, 216
FatI CATG 1 cut(s) 214
FblI GTMKAC 1 cut(s) 138
Fnu4HI GCNGC 1 cut(s) 54
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 1 cut(s) 69
GluI GCNGC 1 cut(s) 54
Hin1II CATG 1 cut(s) 218
HinfI GANTC 4 cut(s) 19, 83, 167, 220
Hpy166II GTNNAC 1 cut(s) 139
Hpy188III TCNNGA 5 cut(s) 16, 61, 89, 157, 202
Hpy8I GTNNAC 1 cut(s) 139
HpyCH4III ACNGT 1 cut(s) 39
HpyCH4V TGCA 2 cut(s) 53, 116
Hsp92II CATG 1 cut(s) 218
Kzo9I GATC 1 cut(s) 119
LpnPI CCDG 4 cut(s) 102, 134, 187, 189
Lsp1109I GCAGC 1 cut(s) 65
LweI GCATC 1 cut(s) 103
MaeI CTAG 1 cut(s) 69
MalI GATC 1 cut(s) 121
MboI GATC 1 cut(s) 119
MboII GAAGA 1 cut(s) 206
MflI RGATCY 1 cut(s) 119
MluCI AATT 2 cut(s) 128, 207
MnlI CCTC 2 cut(s) 35, 209
MseI TTAA 1 cut(s) 229
Mva1269I GAATGC 1 cut(s) 56
NdeII GATC 1 cut(s) 119
NlaIII CATG 1 cut(s) 218
NlaIV GGNNCC 1 cut(s) 121
PctI GAATGC 1 cut(s) 56
PfeI GAWTC 4 cut(s) 19, 83, 167, 220
PkrI GCNGC 1 cut(s) 55
PspN4I GGNNCC 1 cut(s) 121
PsuI RGATCY 1 cut(s) 119
SaqAI TTAA 1 cut(s) 229
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 1 cut(s) 119
SetI ASST 2 cut(s) 178, 201
SfaNI GCATC 1 cut(s) 103
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 2 cut(s) 128, 207
SspMI CTAG 1 cut(s) 69
TaaI ACNGT 1 cut(s) 39
TaqI TCGA 1 cut(s) 27
TasI AATT 2 cut(s) 128, 207
TfiI GAWTC 4 cut(s) 19, 83, 167, 220
Tru1I TTAA 1 cut(s) 229
Tru9I TTAA 1 cut(s) 229
TscAI CASTG 1 cut(s) 42
TseI GCWGC 1 cut(s) 53
TspRI CASTG 1 cut(s) 42
XapI RAATTY 1 cut(s) 128
XmiI GTMKAC 1 cut(s) 138
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.