DNA polymerase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SH3_retrovirus | PF25597 | 55 - 123 | 1.9e-09 | Retroviral polymerase SH3-like domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 298 |
| AciI | CCGC | 2 cut(s) | 257, 376 |
| AcsI | RAATTY | 1 cut(s) | 78 |
| AflII | CTTAAG | 1 cut(s) | 191 |
| AgsI | TTSAA | 3 cut(s) | 88, 320, 344 |
| AluBI | AGCT | 1 cut(s) | 205 |
| AluI | AGCT | 1 cut(s) | 205 |
| ApoI | RAATTY | 1 cut(s) | 78 |
| AspS9I | GGNCC | 1 cut(s) | 209 |
| AsuHPI | GGTGA | 1 cut(s) | 62 |
| AvaII | GGWCC | 1 cut(s) | 209 |
| BbsI | GAAGAC | 1 cut(s) | 98 |
| BclI | TGATCA | 1 cut(s) | 3 |
| BfaI | CTAG | 1 cut(s) | 27 |
| BfmI | CTRYAG | 1 cut(s) | 139 |
| BfrI | CTTAAG | 1 cut(s) | 191 |
| BisI | GCNGC | 1 cut(s) | 258 |
| BlsI | GCNGC | 1 cut(s) | 259 |
| Bme18I | GGWCC | 1 cut(s) | 209 |
| BmgT120I | GGNCC | 1 cut(s) | 209 |
| BpiI | GAAGAC | 1 cut(s) | 98 |
| Bpu10I | CCTNAGC | 1 cut(s) | 171 |
| Bse1I | ACTGG | 1 cut(s) | 298 |
| BseNI | ACTGG | 1 cut(s) | 298 |
| Bsp143I | GATC | 1 cut(s) | 3 |
| BspACI | CCGC | 2 cut(s) | 257, 376 |
| BspTI | CTTAAG | 1 cut(s) | 191 |
| BsrI | ACTGG | 1 cut(s) | 298 |
| BssMI | GATC | 1 cut(s) | 3 |
| BssNAI | GTATAC | 1 cut(s) | 299 |
| Bst1107I | GTATAC | 1 cut(s) | 299 |
| BstAFI | CTTAAG | 1 cut(s) | 191 |
| BstC8I | GCNNGC | 1 cut(s) | 376 |
| BstDEI | CTNAG | 1 cut(s) | 171 |
| BstKTI | GATC | 1 cut(s) | 6 |
| BstMBI | GATC | 1 cut(s) | 3 |
| BstNSI | RCATGY | 1 cut(s) | 305 |
| BstSFI | CTRYAG | 1 cut(s) | 139 |
| BstV2I | GAAGAC | 1 cut(s) | 98 |
| BstZ17I | GTATAC | 1 cut(s) | 299 |
| Cac8I | GCNNGC | 1 cut(s) | 376 |
| Cfr13I | GGNCC | 1 cut(s) | 209 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 24, 59, 137, 172 |
| CviAII | CATG | 2 cut(s) | 13, 302 |
| CviJI | RGCY | 2 cut(s) | 205, 374 |
| CviKI_1 | RGCY | 2 cut(s) | 205, 374 |
| DdeI | CTNAG | 1 cut(s) | 171 |
| DpnI | GATC | 1 cut(s) | 5 |
| DpnII | GATC | 1 cut(s) | 3 |
| DraI | TTTAAA | 1 cut(s) | 280 |
| Eco47I | GGWCC | 1 cut(s) | 209 |
| FaeI | CATG | 2 cut(s) | 16, 305 |
| FatI | CATG | 2 cut(s) | 12, 301 |
| FauI | CCCGC | 1 cut(s) | 383 |
| FbaI | TGATCA | 1 cut(s) | 3 |
| FblI | GTMKAC | 1 cut(s) | 298 |
| Fnu4HI | GCNGC | 1 cut(s) | 258 |
| Fsp4HI | GCNGC | 1 cut(s) | 258 |
| FspBI | CTAG | 1 cut(s) | 27 |
| GluI | GCNGC | 1 cut(s) | 258 |
| Hin1II | CATG | 2 cut(s) | 16, 305 |
| HindIII | AAGCTT | 1 cut(s) | 203 |
| HinfI | GANTC | 1 cut(s) | 130 |
| HphI | GGTGA | 1 cut(s) | 62 |
| Hpy166II | GTNNAC | 1 cut(s) | 299 |
| Hpy188III | TCNNGA | 1 cut(s) | 88 |
| Hpy8I | GTNNAC | 1 cut(s) | 299 |
| HpyAV | CCTTC | 2 cut(s) | 94, 144 |
| HpyCH4IV | ACGT | 1 cut(s) | 335 |
| HpyCH4V | TGCA | 1 cut(s) | 385 |
| HpyF3I | CTNAG | 1 cut(s) | 171 |
| HpySE526I | ACGT | 1 cut(s) | 335 |
| Hsp92II | CATG | 2 cut(s) | 16, 305 |
| Ksp22I | TGATCA | 1 cut(s) | 3 |
| Kzo9I | GATC | 1 cut(s) | 3 |
| LpnPI | CCDG | 1 cut(s) | 279 |
| MaeI | CTAG | 1 cut(s) | 27 |
| MaeII | ACGT | 1 cut(s) | 335 |
| MalI | GATC | 1 cut(s) | 5 |
| MboI | GATC | 1 cut(s) | 3 |
| MboII | GAAGA | 2 cut(s) | 103, 377 |
| MluCI | AATT | 7 cut(s) | 7, 40, 78, 152, 223, 288, 315 |
| MnlI | CCTC | 1 cut(s) | 355 |
| MseI | TTAA | 2 cut(s) | 192, 279 |
| MspCI | CTTAAG | 1 cut(s) | 191 |
| NdeII | GATC | 1 cut(s) | 3 |
| NlaIII | CATG | 2 cut(s) | 16, 305 |
| NspI | RCATGY | 1 cut(s) | 305 |
| PfeI | GAWTC | 1 cut(s) | 130 |
| PkrI | GCNGC | 1 cut(s) | 259 |
| PspPI | GGNCC | 1 cut(s) | 209 |
| SaqAI | TTAA | 2 cut(s) | 192, 279 |
| SatI | GCNGC | 1 cut(s) | 258 |
| Sau3AI | GATC | 1 cut(s) | 3 |
| Sau96I | GGNCC | 1 cut(s) | 209 |
| SetI | ASST | 3 cut(s) | 177, 207, 338 |
| SfcI | CTRYAG | 1 cut(s) | 139 |
| SinI | GGWCC | 1 cut(s) | 209 |
| SmiI | ATTTAAAT | 1 cut(s) | 280 |
| SmlI | CTYRAG | 1 cut(s) | 191 |
| SmoI | CTYRAG | 1 cut(s) | 191 |
| Sse9I | AATT | 7 cut(s) | 7, 40, 78, 152, 223, 288, 315 |
| SsiI | CCGC | 2 cut(s) | 257, 376 |
| SspI | AATATT | 1 cut(s) | 351 |
| SspMI | CTAG | 1 cut(s) | 27 |
| SwaI | ATTTAAAT | 1 cut(s) | 280 |
| TaiI | ACGT | 1 cut(s) | 338 |
| TaqI | TCGA | 1 cut(s) | 178 |
| TasI | AATT | 7 cut(s) | 7, 40, 78, 152, 223, 288, 315 |
| TauI | GCSGC | 1 cut(s) | 260 |
| TfiI | GAWTC | 1 cut(s) | 130 |
| Tru1I | TTAA | 2 cut(s) | 192, 279 |
| Tru9I | TTAA | 2 cut(s) | 192, 279 |
| TspDTI | ATGAA | 3 cut(s) | 90, 300, 328 |
| Vha464I | CTTAAG | 1 cut(s) | 191 |
| VpaK11BI | GGWCC | 1 cut(s) | 209 |
| XapI | RAATTY | 1 cut(s) | 78 |
| XceI | RCATGY | 1 cut(s) | 305 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 42 |
| XmiI | GTMKAC | 1 cut(s) | 298 |
| XspI | CTAG | 1 cut(s) | 27 |