Prupe.4G265600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000258
Physical Location & Seq
Forward (+)
19789348 .. 19789854
507 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G265600.1

Sequence Viewer

Length: 447 bp
ATGGAAGCTGTAAACAATTCAATCACCCCTGACCTAAACAAACCTTCCAAATTTGAGGGTCTTCATTTTAAACGATGGAGGCAAAAGATGTTGTTTTACCTTACAACGAAAAAATTAGCTTTTGTCTGCACATCTGTTAAACCATATGCCTTTGATAATCCCACTCCTGAACAAACTTGGGCCTTGCAGACATGGACTGAAAATGATTTCTTGTGCAAGAACTATATTTTGAATGGTTTATCTAATGATCTTTATGATTATTATTCTTCTTATGATACTGCTAAAGAATTGTGGGATGCGCTTCAGAAAAAATATGATACAAAAGAATCTGTAGAAGCACAACCTCATGAACTACAGAAAATTGCACATGAAATTATTATTGAAGTCATAAATTTAGATGAACAATTTCAGGTGGCTGTTATCATTGATAAGCTGCCTCCCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

17.36

Weight (kDa)

5.18

Isoelectric Point (pI)

46.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00980
fragaria_vesca FvH4_1g25682 FvH4_2g13961 FvH4_2g20162 FvH4_2g24753 FvH4_3g12191 FvH4_3g12632 FvH4_3g16171 FvH4_4g05871 FvH4_4g05873 FvH4_4g10121 FvH4_4g15488 FvH4_4g23911 FvH4_4g27782 FvH4_5g08912 FvH4_5g23001 FvH4_5g24552 FvH4_5g32801 FvH4_5g32802 FvH4_6g05093 FvH4_6g19722 FvH4_6g20391 FvH4_6g33792 FvH4_7g01381 FvH4_7g16761 FvH4_7g16761 FvH4_7g16761
malus_domestica MD01G1082500.v1.1 MD15G1436400.v1.1
prunus_persica Prupe.2G021400_v2.0.a1 Prupe.2G052400_v2.0.a1 Prupe.2G065000_v2.0.a1 Prupe.2G187700_v2.0.a1 Prupe.2G187800_v2.0.a1 Prupe.2G189900_v2.0.a1 Prupe.2G191300_v2.0.a1 Prupe.2G191700_v2.0.a1 Prupe.4G265600_v2.0.a1 Prupe.7G014200_v2.0.a1 Prupe.7G039000_v2.0.a1
pyrus_communis pycom01g05590 pycom01g05910 pycom02g12230 pycom02g25840 pycom03g15580 pycom04g04480 pycom05g09230 pycom05g23350 pycom05g23360 pycom07g08380 pycom09g01980 pycom09g01990 pycom11g18190 pycom11g18200 pycom11g21580 pycom13g04160 pycom15g25800 pycom16g16210 pycom16g17230 pycom16g24560 pycom16g25700 pycom17g11020
rosa_chinensis RchiOBHm_Chr1g0359981 RchiOBHm_Chr2g0151961 RchiOBHm_Chr2g0171331 RchiOBHm_Chr5g0081471 RchiOBHm_Chr6g0283031 RchiOBHm_Chr7g0197111 RchiOBHm_Chr7g0222601
rosa_laevigata RLG00000027843 RLG00000027845 RLG00000030065
rosa_multiflora Rmu_sc0000381.1_g000031 Rmu_sc0001179.1_g000035 Rmu_sc0001616.1_g000046 Rmu_sc0001851.1_g000032 Rmu_sc0002152.1_g000013 Rmu_sc0004031.1_g000015 Rmu_sc0004645.1_g000003 Rmu_sc0007393.1_g000001 Rmu_sc0008949.1_g000003 Rmu_sc0009799.1_g000011 Rmu_sc0011614.1_g000001 Rmu_sc0011699.1_g000009 Rmu_sc0019280.1_g000001 Rmu_sc0023984.1_g000001 Rmu_ssc0000050.1_g000036
rosa_roxburghii Rroxscaffold_1G00022650 Rroxscaffold_1G00033480 Rroxscaffold_3G00270250 Rroxscaffold_4G00296600 Rroxscaffold_4G00296760 Rroxscaffold_6G00409840
rosa_rugosa Rorug01G0273800 Rorug01G0273900 Rorug01G0274000
rosa_samantha Rh1AG287300 Rh1AG288100 Rh1BG253000 Rh1BG253500 Rh1BG399800 Rh1CG270400 Rh1CG271000 Rh1DG282000 Rh1DG282500 Rh4DG126500 Rh5DG194600 Rh5DG461100
rosa_wichuraiana Rw0G009130 Rw1G002590 Rw1G008490 Rw1G012210 Rw1G014290 Rw1G014490 Rw1G025510 Rw2G025840 Rw2G026170 Rw2G036510 Rw3G003050 Rw4G009270 Rw5G002350 Rw5G013930 Rw5G019500 Rw5G025890 Rw5G029960 Rw5G032360 Rw6G009890 Rw6G015670 Rw6G015860 Rw7G010030 Rw7G032600 Rw7G032770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 50, 391
AcuI CTGAAG 1 cut(s) 287
AgsI TTSAA 3 cut(s) 21, 232, 383
AluBI AGCT 4 cut(s) 8, 119, 433, 444
AluI AGCT 4 cut(s) 8, 119, 433, 444
AoxI GGCC 1 cut(s) 180
ApeKI GCWGC 1 cut(s) 433
ApoI RAATTY 2 cut(s) 50, 391
Asp700I GAANNNNTTC 1 cut(s) 405
AspLEI GCGC 1 cut(s) 301
AspS9I GGNCC 1 cut(s) 180
AsuHPI GGTGA 1 cut(s) 16
BbsI GAAGAC 1 cut(s) 53
BbvI GCAGC 1 cut(s) 420
BccI CCATC 1 cut(s) 69
BfaI CTAG 1 cut(s) 445
BfmI CTRYAG 2 cut(s) 330, 353
BisI GCNGC 1 cut(s) 434
BlsI GCNGC 1 cut(s) 435
BmgT120I GGNCC 1 cut(s) 180
BmsI GCATC 1 cut(s) 286
BpiI GAAGAC 1 cut(s) 53
BseGI GGATG 1 cut(s) 301
BseXI GCAGC 1 cut(s) 420
BseYI CCCAGC 1 cut(s) 440
BsgI GTGCAG 1 cut(s) 112
BshFI GGCC 1 cut(s) 182
BsnI GGCC 1 cut(s) 182
Bsp143I GATC 1 cut(s) 247
BspANI GGCC 1 cut(s) 182
BspHI TCATGA 1 cut(s) 346
BssMI GATC 1 cut(s) 247
BstF5I GGATG 1 cut(s) 301
BstHHI GCGC 1 cut(s) 301
BstKTI GATC 1 cut(s) 250
BstMBI GATC 1 cut(s) 247
BstSFI CTRYAG 2 cut(s) 330, 353
BstV1I GCAGC 1 cut(s) 420
BstV2I GAAGAC 1 cut(s) 53
BsuRI GGCC 1 cut(s) 182
BtsCI GGATG 1 cut(s) 301
CciI TCATGA 1 cut(s) 346
CfoI GCGC 1 cut(s) 301
Cfr13I GGNCC 1 cut(s) 180
CviAII CATG 3 cut(s) 192, 347, 368
CviJI RGCY 6 cut(s) 8, 119, 182, 416, 433, 444
CviKI_1 RGCY 6 cut(s) 8, 119, 182, 416, 433, 444
DpnI GATC 1 cut(s) 249
DpnII GATC 1 cut(s) 247
DraI TTTAAA 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 287
FaeI CATG 3 cut(s) 195, 350, 371
FatI CATG 3 cut(s) 191, 346, 367
FauNDI CATATG 1 cut(s) 145
Fnu4HI GCNGC 1 cut(s) 434
FokI GGATG 1 cut(s) 308
Fsp4HI GCNGC 1 cut(s) 434
FspBI CTAG 1 cut(s) 445
GlaI GCGC 1 cut(s) 300
GluI GCNGC 1 cut(s) 434
GsaI CCCAGC 1 cut(s) 444
HaeIII GGCC 1 cut(s) 182
HhaI GCGC 1 cut(s) 301
Hin1II CATG 3 cut(s) 195, 350, 371
Hin6I GCGC 1 cut(s) 299
HinP1I GCGC 1 cut(s) 299
HinfI GANTC 1 cut(s) 326
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 1 cut(s) 306
Hpy188III TCNNGA 2 cut(s) 167, 347
Hpy8I GTNNAC 1 cut(s) 13
HpyAV CCTTC 1 cut(s) 54
HpyCH4V TGCA 4 cut(s) 129, 187, 216, 365
Hsp92II CATG 3 cut(s) 195, 350, 371
HspAI GCGC 1 cut(s) 299
Kzo9I GATC 1 cut(s) 247
LpnPI CCDG 3 cut(s) 42, 180, 395
Lsp1109I GCAGC 1 cut(s) 420
LweI GCATC 1 cut(s) 286
MaeI CTAG 1 cut(s) 445
MalI GATC 1 cut(s) 249
MboI GATC 1 cut(s) 247
MboII GAAGA 2 cut(s) 53, 258
MluCI AATT 8 cut(s) 16, 50, 113, 287, 360, 372, 391, 404
MnlI CCTC 4 cut(s) 49, 72, 354, 447
MroXI GAANNNNTTC 1 cut(s) 405
MseI TTAA 2 cut(s) 69, 138
NdeI CATATG 1 cut(s) 145
NdeII GATC 1 cut(s) 247
NlaIII CATG 3 cut(s) 195, 350, 371
PagI TCATGA 1 cut(s) 346
PdmI GAANNNNTTC 1 cut(s) 405
PfeI GAWTC 1 cut(s) 326
PkrI GCNGC 1 cut(s) 435
PspFI CCCAGC 1 cut(s) 440
PspPI GGNCC 1 cut(s) 180
SaqAI TTAA 2 cut(s) 69, 138
SatI GCNGC 1 cut(s) 434
Sau3AI GATC 1 cut(s) 247
Sau96I GGNCC 1 cut(s) 180
SetI ASST 9 cut(s) 10, 36, 46, 102, 121, 346, 414, 435, 446
SfaNI GCATC 1 cut(s) 286
SfcI CTRYAG 2 cut(s) 330, 353
Sse9I AATT 8 cut(s) 16, 50, 113, 287, 360, 372, 391, 404
SspMI CTAG 1 cut(s) 445
TasI AATT 8 cut(s) 16, 50, 113, 287, 360, 372, 391, 404
TfiI GAWTC 1 cut(s) 326
Tru1I TTAA 2 cut(s) 69, 138
Tru9I TTAA 2 cut(s) 69, 138
TseI GCWGC 1 cut(s) 433
TspDTI ATGAA 4 cut(s) 53, 363, 384, 414
XapI RAATTY 2 cut(s) 50, 391
XmnI GAANNNNTTC 1 cut(s) 405
XspI CTAG 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.