Rorug01G0274000

Transcriptional Coactivator p15 (PC4)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
38658742 .. 38667635
8894 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0274000.1

Sequence Viewer

Length: 423 bp
ATGGAAGAGTATGTTGTATCAATCTCAGTTAGTTTGAACTTGCGCACTGTTGTTAAGCCCCACGCCTGGTTCCATTTATTAGAAATAAATACGCAACGGGAAGACATAAAACCTGAACCCTGTGCCATACAAAGAAAACAAGGTAGGGAAATCAGCCAAGACTGCTCCCAAACAACAAAATACAGAAATCAAGAACCAGGTCTGAAAAACCATTGCTACCGAAACCCAAGAATGGGAACAACTGTATATGCCATTGAAGATATGTTCCTCTATCTCAATGGCGAAACAGAAAGCGACTACTCTCGGGAGGAACCCTGCAGAATACATTATAGGGACATTCATTCTACTTTAGCCCATCATCCTGGGGTCTTCCAGAGGATGTGCTTAACAAACGCTGCAGTTGTGGTAAAATTGGCATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

140

Amino Acids

16.3

Weight (kDa)

7.04

Isoelectric Point (pI)

39.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00980
fragaria_vesca FvH4_1g25682 FvH4_2g13961 FvH4_2g20162 FvH4_2g24753 FvH4_3g12191 FvH4_3g12632 FvH4_3g16171 FvH4_4g05871 FvH4_4g05873 FvH4_4g10121 FvH4_4g15488 FvH4_4g23911 FvH4_4g27782 FvH4_5g08912 FvH4_5g23001 FvH4_5g24552 FvH4_5g32801 FvH4_5g32802 FvH4_6g05093 FvH4_6g19722 FvH4_6g20391 FvH4_6g33792 FvH4_7g01381 FvH4_7g16761 FvH4_7g16761 FvH4_7g16761
malus_domestica MD01G1082500.v1.1 MD15G1436400.v1.1
prunus_persica Prupe.2G021400_v2.0.a1 Prupe.2G052400_v2.0.a1 Prupe.2G065000_v2.0.a1 Prupe.2G187700_v2.0.a1 Prupe.2G187800_v2.0.a1 Prupe.2G189900_v2.0.a1 Prupe.2G191300_v2.0.a1 Prupe.2G191700_v2.0.a1 Prupe.4G265600_v2.0.a1 Prupe.7G014200_v2.0.a1 Prupe.7G039000_v2.0.a1
pyrus_communis pycom01g05590 pycom01g05910 pycom02g12230 pycom02g25840 pycom03g15580 pycom04g04480 pycom05g09230 pycom05g23350 pycom05g23360 pycom07g08380 pycom09g01980 pycom09g01990 pycom11g18190 pycom11g18200 pycom11g21580 pycom13g04160 pycom15g25800 pycom16g16210 pycom16g17230 pycom16g24560 pycom16g25700 pycom17g11020
rosa_chinensis RchiOBHm_Chr1g0359981 RchiOBHm_Chr2g0151961 RchiOBHm_Chr2g0171331 RchiOBHm_Chr5g0081471 RchiOBHm_Chr6g0283031 RchiOBHm_Chr7g0197111 RchiOBHm_Chr7g0222601
rosa_laevigata RLG00000027843 RLG00000027845 RLG00000030065
rosa_multiflora Rmu_sc0000381.1_g000031 Rmu_sc0001179.1_g000035 Rmu_sc0001616.1_g000046 Rmu_sc0001851.1_g000032 Rmu_sc0002152.1_g000013 Rmu_sc0004031.1_g000015 Rmu_sc0004645.1_g000003 Rmu_sc0007393.1_g000001 Rmu_sc0008949.1_g000003 Rmu_sc0009799.1_g000011 Rmu_sc0011614.1_g000001 Rmu_sc0011699.1_g000009 Rmu_sc0019280.1_g000001 Rmu_sc0023984.1_g000001 Rmu_ssc0000050.1_g000036
rosa_roxburghii Rroxscaffold_1G00022650 Rroxscaffold_1G00033480 Rroxscaffold_3G00270250 Rroxscaffold_4G00296600 Rroxscaffold_4G00296760 Rroxscaffold_6G00409840
rosa_rugosa Rorug01G0273800 Rorug01G0273900 Rorug01G0274000
rosa_samantha Rh1AG287300 Rh1AG288100 Rh1BG253000 Rh1BG253500 Rh1BG399800 Rh1CG270400 Rh1CG271000 Rh1DG282000 Rh1DG282500 Rh4DG126500 Rh5DG194600 Rh5DG461100
rosa_wichuraiana Rw0G009130 Rw1G002590 Rw1G008490 Rw1G012210 Rw1G014290 Rw1G014490 Rw1G025510 Rw2G025840 Rw2G026170 Rw2G036510 Rw3G003050 Rw4G009270 Rw5G002350 Rw5G013930 Rw5G019500 Rw5G025890 Rw5G029960 Rw5G032360 Rw6G009890 Rw6G015670 Rw6G015860 Rw7G010030 Rw7G032600 Rw7G032770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 44
AfiI CCNNNNNNNGG 3 cut(s) 66, 232, 233
AgsI TTSAA 2 cut(s) 37, 257
AjnI CCWGG 3 cut(s) 65, 196, 361
Ama87I CYCGRG 1 cut(s) 303
ApeKI GCWGC 1 cut(s) 395
AspLEI GCGC 1 cut(s) 45
AvaI CYCGRG 1 cut(s) 303
BbsI GAAGAC 2 cut(s) 108, 361
BbvI GCAGC 1 cut(s) 382
BccI CCATC 1 cut(s) 363
BciT130I CCWGG 3 cut(s) 67, 198, 363
BfmI CTRYAG 2 cut(s) 316, 396
BisI GCNGC 1 cut(s) 396
BlsI GCNGC 1 cut(s) 397
Bme1390I CCNGG 3 cut(s) 67, 198, 363
BmeT110I CYCGRG 1 cut(s) 303
BmiI GGNNCC 2 cut(s) 71, 312
BmrFI CCNGG 3 cut(s) 67, 198, 363
BpiI GAAGAC 2 cut(s) 108, 361
BsaJI CCNNGG 1 cut(s) 362
Bsc4I CCNNNNNNNGG 3 cut(s) 66, 232, 233
Bse3DI GCAATG 1 cut(s) 211
BseBI CCWGG 3 cut(s) 67, 198, 363
BseDI CCNNGG 1 cut(s) 362
BseGI GGATG 2 cut(s) 358, 384
BseLI CCNNNNNNNGG 3 cut(s) 66, 232, 233
BseMI GCAATG 1 cut(s) 211
BseMII CTCAG 1 cut(s) 39
BseXI GCAGC 1 cut(s) 382
BsiHKCI CYCGRG 1 cut(s) 303
BslFI GGGAC 1 cut(s) 347
BslI CCNNNNNNNGG 3 cut(s) 66, 232, 233
BsmFI GGGAC 1 cut(s) 347
BsoBI CYCGRG 1 cut(s) 303
BspCNI CTCAG 1 cut(s) 38
BspLI GGNNCC 2 cut(s) 71, 312
BspMAI CTGCAG 2 cut(s) 320, 400
BsrDI GCAATG 1 cut(s) 211
BssECI CCNNGG 1 cut(s) 362
Bst2UI CCWGG 3 cut(s) 67, 198, 363
Bst4CI ACNGT 2 cut(s) 49, 244
BstDEI CTNAG 1 cut(s) 25
BstF5I GGATG 2 cut(s) 358, 384
BstHHI GCGC 1 cut(s) 45
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstNI CCWGG 3 cut(s) 67, 198, 363
BstNSI RCATGY 1 cut(s) 420
BstSCI CCNGG 3 cut(s) 65, 196, 361
BstSFI CTRYAG 2 cut(s) 316, 396
BstV1I GCAGC 1 cut(s) 382
BstV2I GAAGAC 2 cut(s) 108, 361
BstXI CCANNNNNNTGG 1 cut(s) 362
BtsCI GGATG 2 cut(s) 358, 384
BtsIMutI CAGTG 1 cut(s) 45
CfoI GCGC 1 cut(s) 45
CsiI ACCWGGT 1 cut(s) 196
CviAII CATG 1 cut(s) 417
CviJI RGCY 3 cut(s) 58, 156, 353
CviKI_1 RGCY 3 cut(s) 58, 156, 353
DdeI CTNAG 1 cut(s) 25
Eco88I CYCGRG 1 cut(s) 303
EcoRII CCWGG 3 cut(s) 65, 196, 361
FaeI CATG 1 cut(s) 420
FaiI YATR 8 cut(s) 12, 107, 128, 247, 249, 263, 330, 418
FaqI GGGAC 1 cut(s) 347
FatI CATG 1 cut(s) 416
Fnu4HI GCNGC 1 cut(s) 396
FokI GGATG 2 cut(s) 345, 391
Fsp4HI GCNGC 1 cut(s) 396
FspI TGCGCA 1 cut(s) 44
GlaI GCGC 1 cut(s) 44
GluI GCNGC 1 cut(s) 396
HhaI GCGC 1 cut(s) 45
Hin1II CATG 1 cut(s) 420
Hin6I GCGC 1 cut(s) 43
HinP1I GCGC 1 cut(s) 43
Hpy188I TCNGA 1 cut(s) 204
Hpy188III TCNNGA 3 cut(s) 191, 305, 373
HpyCH4III ACNGT 2 cut(s) 49, 244
HpyCH4V TGCA 2 cut(s) 318, 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
HpyF3I CTNAG 1 cut(s) 25
Hsp92II CATG 1 cut(s) 420
HspAI GCGC 1 cut(s) 43
LmnI GCTCC 1 cut(s) 170
Lsp1109I GCAGC 1 cut(s) 382
MabI ACCWGGT 1 cut(s) 196
MboII GAAGA 4 cut(s) 17, 113, 269, 361
MluCI AATT 1 cut(s) 410
MnlI CCTC 3 cut(s) 278, 301, 369
MseI TTAA 2 cut(s) 54, 386
MspR9I CCNGG 3 cut(s) 67, 198, 363
MvaI CCWGG 3 cut(s) 67, 198, 363
MwoI GCNNNNNNNGC 1 cut(s) 162
NlaIII CATG 1 cut(s) 420
NlaIV GGNNCC 2 cut(s) 71, 312
NsbI TGCGCA 1 cut(s) 44
NspI RCATGY 1 cut(s) 420
PkrI GCNGC 1 cut(s) 397
Psp6I CCWGG 3 cut(s) 65, 196, 361
PspGI CCWGG 3 cut(s) 65, 196, 361
PspN4I GGNNCC 2 cut(s) 71, 312
PstI CTGCAG 2 cut(s) 320, 400
SaqAI TTAA 2 cut(s) 54, 386
SatI GCNGC 1 cut(s) 396
ScrFI CCNGG 3 cut(s) 67, 198, 363
SetI ASST 3 cut(s) 115, 145, 202
SexAI ACCWGGT 1 cut(s) 196
SfcI CTRYAG 2 cut(s) 316, 396
Sse9I AATT 1 cut(s) 410
StyD4I CCNGG 3 cut(s) 65, 196, 361
TaaI ACNGT 2 cut(s) 49, 244
TasI AATT 1 cut(s) 410
Tru1I TTAA 2 cut(s) 54, 386
Tru9I TTAA 2 cut(s) 54, 386
TscAI CASTG 1 cut(s) 52
TseI GCWGC 1 cut(s) 395
TspDTI ATGAA 1 cut(s) 329
TspRI CASTG 1 cut(s) 52
XceI RCATGY 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.