Prupe.2G065000_v2.0.a1

Pfam:UBN2_2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000258
Physical Location & Seq
Reverse (-)
8852887 .. 8853781
895 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G065000.1

Sequence Viewer

Length: 855 bp
ATGGAAGCAGTAAACAATTCATTCACCCCTGACCCAAATAAACCTTCCAAATTTGAGGGTCTTCATTTTAAACGATGGAGGCAAAAGATGTTGTTTTACCCTACAACGAAAAAATTAGCTTCTGTCTGCACATCTGATAAACCATATGCCTCTGACAATCCCACTCCTGAACAAACTTGGGCCTTGCAGACATGGACTGAAAATGATTTCTTGTGCAAGAACTATATTTTGAATGGTTTATCTGATGATCTTTATGATTATTATTCTTCTTATGATACTGCTAAAGATTTGTGGGATGCACTTCAGAAAAACTATAACACAGAAGAGGCTGGTGCAAAGAAATTTGCTGTCAGTCGCTATTTGAAGTTTCAAATGATAGATGAAAAATCAGTAGAAGCACAATCTCATGAACTACAGAAAAATGCACATGAAATTATTATTGAAGGCATGAATCTAGATGAACAATTTCAGATTTCAAGAATGCACTGCGTCAGCAAAGAATTTTCCTTGGAAAGCTTGATCACTCGTTTGCGTATTGAGGAGGAGGCCCGGAAACATGACATGAAAGAAGAAGTTTTGCTCGTCTCCAACAACAAGAAAAATCACAACTCCACCAAGAATCAAACCCCAGCTGCTCTGAAGACAAATGCCAAGAATATGAAAAATCAAAACAGGAACTGCAACAACAACGACCAAAATCGAAATGGGCAACACGACCAGAGTCGGAATCCTCAACACTATCAGAATCGGAACCTTCATCAGAATCAGAATAGGAGTCAACCCCCCTCATGTAATGATGATTTGGGACAGTTTCTATGTTATAACTGTCACAAGCTGGGGGCACCTTGCCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

285

Amino Acids

33.12

Weight (kDa)

7.6

Isoelectric Point (pI)

51.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00980
fragaria_vesca FvH4_1g25682 FvH4_2g13961 FvH4_2g20162 FvH4_2g24753 FvH4_3g12191 FvH4_3g12632 FvH4_3g16171 FvH4_4g05871 FvH4_4g05873 FvH4_4g10121 FvH4_4g15488 FvH4_4g23911 FvH4_4g27782 FvH4_5g08912 FvH4_5g23001 FvH4_5g24552 FvH4_5g32801 FvH4_5g32802 FvH4_6g05093 FvH4_6g19722 FvH4_6g20391 FvH4_6g33792 FvH4_7g01381 FvH4_7g16761 FvH4_7g16761 FvH4_7g16761
malus_domestica MD01G1082500.v1.1 MD15G1436400.v1.1
prunus_persica Prupe.2G021400_v2.0.a1 Prupe.2G052400_v2.0.a1 Prupe.2G065000_v2.0.a1 Prupe.2G187700_v2.0.a1 Prupe.2G187800_v2.0.a1 Prupe.2G189900_v2.0.a1 Prupe.2G191300_v2.0.a1 Prupe.2G191700_v2.0.a1 Prupe.4G265600_v2.0.a1 Prupe.7G014200_v2.0.a1 Prupe.7G039000_v2.0.a1
pyrus_communis pycom01g05590 pycom01g05910 pycom02g12230 pycom02g25840 pycom03g15580 pycom04g04480 pycom05g09230 pycom05g23350 pycom05g23360 pycom07g08380 pycom09g01980 pycom09g01990 pycom11g18190 pycom11g18200 pycom11g21580 pycom13g04160 pycom15g25800 pycom16g16210 pycom16g17230 pycom16g24560 pycom16g25700 pycom17g11020
rosa_chinensis RchiOBHm_Chr1g0359981 RchiOBHm_Chr2g0151961 RchiOBHm_Chr2g0171331 RchiOBHm_Chr5g0081471 RchiOBHm_Chr6g0283031 RchiOBHm_Chr7g0197111 RchiOBHm_Chr7g0222601
rosa_laevigata RLG00000027843 RLG00000027845 RLG00000030065
rosa_multiflora Rmu_sc0000381.1_g000031 Rmu_sc0001179.1_g000035 Rmu_sc0001616.1_g000046 Rmu_sc0001851.1_g000032 Rmu_sc0002152.1_g000013 Rmu_sc0004031.1_g000015 Rmu_sc0004645.1_g000003 Rmu_sc0007393.1_g000001 Rmu_sc0008949.1_g000003 Rmu_sc0009799.1_g000011 Rmu_sc0011614.1_g000001 Rmu_sc0011699.1_g000009 Rmu_sc0019280.1_g000001 Rmu_sc0023984.1_g000001 Rmu_ssc0000050.1_g000036
rosa_roxburghii Rroxscaffold_1G00022650 Rroxscaffold_1G00033480 Rroxscaffold_3G00270250 Rroxscaffold_4G00296600 Rroxscaffold_4G00296760 Rroxscaffold_6G00409840
rosa_rugosa Rorug01G0273800 Rorug01G0273900 Rorug01G0274000
rosa_samantha Rh1AG287300 Rh1AG288100 Rh1BG253000 Rh1BG253500 Rh1BG399800 Rh1CG270400 Rh1CG271000 Rh1DG282000 Rh1DG282500 Rh4DG126500 Rh5DG194600 Rh5DG461100
rosa_wichuraiana Rw0G009130 Rw1G002590 Rw1G008490 Rw1G012210 Rw1G014290 Rw1G014490 Rw1G025510 Rw2G025840 Rw2G026170 Rw2G036510 Rw3G003050 Rw4G009270 Rw5G002350 Rw5G013930 Rw5G019500 Rw5G025890 Rw5G029960 Rw5G032360 Rw6G009890 Rw6G015670 Rw6G015860 Rw7G010030 Rw7G032600 Rw7G032770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 822
AccB1I GGYRCC 1 cut(s) 841
AcsI RAATTY 3 cut(s) 50, 341, 500
AcuI CTGAAG 2 cut(s) 287, 659
AgsI TTSAA 5 cut(s) 232, 364, 371, 443, 477
AjuI GAANNNNNNNTTGG 2 cut(s) 28, 60
AluBI AGCT 4 cut(s) 119, 516, 632, 835
AluI AGCT 4 cut(s) 119, 516, 632, 835
Alw26I GTCTC 1 cut(s) 589
AlwNI CAGNNNCTG 1 cut(s) 678
AoxI GGCC 2 cut(s) 180, 546
ApeKI GCWGC 1 cut(s) 632
ApoI RAATTY 3 cut(s) 50, 341, 500
Asp700I GAANNNNTTC 1 cut(s) 465
AspS9I GGNCC 2 cut(s) 180, 547
AsuC2I CCSGG 1 cut(s) 550
AsuHPI GGTGA 1 cut(s) 16
BaeGI GKGCMC 1 cut(s) 844
BanI GGYRCC 1 cut(s) 841
BbsI GAAGAC 2 cut(s) 53, 647
BbvI GCAGC 1 cut(s) 619
BccI CCATC 1 cut(s) 69
BclI TGATCA 1 cut(s) 519
BcnI CCSGG 1 cut(s) 550
BcoDI GTCTC 1 cut(s) 589
BfaI CTAG 1 cut(s) 455
BfmI CTRYAG 1 cut(s) 413
BisI GCNGC 1 cut(s) 633
BlsI GCNGC 1 cut(s) 634
Bme1390I CCNGG 1 cut(s) 550
BmgT120I GGNCC 2 cut(s) 180, 547
BmiI GGNNCC 2 cut(s) 752, 843
BmrFI CCNGG 1 cut(s) 550
BmsI GCATC 1 cut(s) 286
BoxI GACNNNNGTC 1 cut(s) 720
BpiI GAAGAC 2 cut(s) 53, 647
BpuMI CCSGG 1 cut(s) 550
BsaJI CCNNGG 1 cut(s) 507
BseDI CCNNGG 1 cut(s) 507
BseGI GGATG 1 cut(s) 301
BseRI GAGGAG 2 cut(s) 554, 557
BseSI GKGCMC 1 cut(s) 844
BseXI GCAGC 1 cut(s) 619
BseYI CCCAGC 2 cut(s) 628, 835
BsgI GTGCAG 1 cut(s) 112
BshFI GGCC 2 cut(s) 182, 548
BshNI GGYRCC 1 cut(s) 841
BsiSI CCGG 1 cut(s) 550
BslFI GGGAC 1 cut(s) 819
BsmAI GTCTC 1 cut(s) 589
BsmBI CGTCTC 1 cut(s) 589
BsmFI GGGAC 1 cut(s) 819
BsmI GAATGC 1 cut(s) 486
BsnI GGCC 2 cut(s) 182, 548
Bsp1286I GDGCHC 1 cut(s) 844
Bsp143I GATC 2 cut(s) 247, 519
BspANI GGCC 2 cut(s) 182, 548
BspHI TCATGA 1 cut(s) 406
BspLI GGNNCC 2 cut(s) 752, 843
BspT107I GGYRCC 1 cut(s) 841
BssECI CCNNGG 1 cut(s) 507
BssMI GATC 2 cut(s) 247, 519
BssT1I CCWWGG 1 cut(s) 507
Bst4CI ACNGT 2 cut(s) 810, 827
Bst6I CTCTTC 1 cut(s) 318
BstF5I GGATG 1 cut(s) 301
BstKTI GATC 2 cut(s) 250, 522
BstMAI GTCTC 1 cut(s) 589
BstMBI GATC 2 cut(s) 247, 519
BstPAI GACNNNNGTC 1 cut(s) 720
BstSCI CCNGG 1 cut(s) 548
BstSFI CTRYAG 1 cut(s) 413
BstSLI GKGCMC 1 cut(s) 844
BstV1I GCAGC 1 cut(s) 619
BstV2I GAAGAC 2 cut(s) 53, 647
BsuRI GGCC 2 cut(s) 182, 548
BtsCI GGATG 1 cut(s) 301
BtsI GCAGTG 1 cut(s) 484
BtsIMutI CAGTG 1 cut(s) 484
CaiI CAGNNNCTG 1 cut(s) 678
CciI TCATGA 1 cut(s) 406
Cfr13I GGNCC 2 cut(s) 180, 547
CseI GACGC 1 cut(s) 478
CviAII CATG 7 cut(s) 192, 407, 428, 448, 557, 562, 789
CviJI RGCY 7 cut(s) 119, 182, 329, 516, 548, 632, 835
CviKI_1 RGCY 7 cut(s) 119, 182, 329, 516, 548, 632, 835
DpnI GATC 2 cut(s) 249, 521
DpnII GATC 2 cut(s) 247, 519
DraI TTTAAA 1 cut(s) 70
Eam1104I CTCTTC 1 cut(s) 318
EarI CTCTTC 1 cut(s) 318
Eco130I CCWWGG 1 cut(s) 507
Eco57I CTGAAG 2 cut(s) 287, 659
EcoT14I CCWWGG 1 cut(s) 507
ErhI CCWWGG 1 cut(s) 507
Esp3I CGTCTC 1 cut(s) 589
FaeI CATG 7 cut(s) 195, 410, 431, 451, 560, 565, 792
FaqI GGGAC 1 cut(s) 819
FatI CATG 7 cut(s) 191, 406, 427, 447, 556, 561, 788
FauNDI CATATG 1 cut(s) 145
FbaI TGATCA 1 cut(s) 519
Fnu4HI GCNGC 1 cut(s) 633
FokI GGATG 1 cut(s) 308
Fsp4HI GCNGC 1 cut(s) 633
FspBI CTAG 1 cut(s) 455
GluI GCNGC 1 cut(s) 633
GsaI CCCAGC 2 cut(s) 632, 839
HaeIII GGCC 2 cut(s) 182, 548
HapII CCGG 1 cut(s) 550
HgaI GACGC 1 cut(s) 478
Hin1II CATG 7 cut(s) 195, 410, 431, 451, 560, 565, 792
HincII GTYRAC 1 cut(s) 779
HindII GTYRAC 1 cut(s) 779
HindIII AAGCTT 1 cut(s) 514
HinfI GANTC 7 cut(s) 451, 619, 721, 727, 745, 763, 775
HpaII CCGG 1 cut(s) 550
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 13, 779
Hpy188III TCNNGA 4 cut(s) 167, 407, 455, 477
Hpy8I GTNNAC 2 cut(s) 13, 779
HpyAV CCTTC 3 cut(s) 54, 437, 764
HpyCH4III ACNGT 2 cut(s) 810, 827
HpyCH4V TGCA 8 cut(s) 129, 187, 216, 299, 335, 425, 484, 681
Hsp92II CATG 7 cut(s) 195, 410, 431, 451, 560, 565, 792
Ksp22I TGATCA 1 cut(s) 519
Kzo9I GATC 2 cut(s) 247, 519
LpnPI CCDG 8 cut(s) 42, 180, 315, 563, 642, 658, 731, 821
Lsp1109I GCAGC 1 cut(s) 619
LweI GCATC 1 cut(s) 286
MaeI CTAG 1 cut(s) 455
MaeIII GTNAC 1 cut(s) 827
MalI GATC 2 cut(s) 249, 521
MboI GATC 2 cut(s) 247, 519
MboII GAAGA 5 cut(s) 53, 258, 335, 581, 652
MhlI GDGCHC 1 cut(s) 844
MluCI AATT 7 cut(s) 16, 50, 113, 341, 432, 464, 500
MlyI GAGTC 2 cut(s) 730, 784
MmeI TCCRAC 2 cut(s) 612, 704
MnlI CCTC 9 cut(s) 49, 72, 160, 319, 532, 535, 538, 741, 796
MroXI GAANNNNTTC 1 cut(s) 465
MseI TTAA 1 cut(s) 69
MspA1I CMGCKG 1 cut(s) 632
MspI CCGG 1 cut(s) 550
MspR9I CCNGG 1 cut(s) 550
Mva1269I GAATGC 1 cut(s) 486
NciI CCSGG 1 cut(s) 550
NdeI CATATG 1 cut(s) 145
NdeII GATC 2 cut(s) 247, 519
NlaIII CATG 7 cut(s) 195, 410, 431, 451, 560, 565, 792
NlaIV GGNNCC 2 cut(s) 752, 843
NmuCI GTSAC 1 cut(s) 827
PagI TCATGA 1 cut(s) 406
PctI GAATGC 1 cut(s) 486
PdmI GAANNNNTTC 1 cut(s) 465
PfeI GAWTC 5 cut(s) 451, 619, 727, 745, 763
PkrI GCNGC 1 cut(s) 634
PleI GAGTC 2 cut(s) 729, 783
PpsI GAGTC 2 cut(s) 729, 783
PshAI GACNNNNGTC 1 cut(s) 720
PsiI TTATAA 1 cut(s) 822
PspFI CCCAGC 2 cut(s) 628, 835
PspN4I GGNNCC 2 cut(s) 752, 843
PspPI GGNCC 2 cut(s) 180, 547
PstNI CAGNNNCTG 1 cut(s) 678
PvuII CAGCTG 1 cut(s) 632
SaqAI TTAA 1 cut(s) 69
SatI GCNGC 1 cut(s) 633
Sau3AI GATC 2 cut(s) 247, 519
Sau96I GGNCC 2 cut(s) 180, 547
SchI GAGTC 2 cut(s) 730, 784
ScrFI CCNGG 1 cut(s) 550
SduI GDGCHC 1 cut(s) 844
SetI ASST 7 cut(s) 46, 121, 518, 634, 756, 837, 847
SfaNI GCATC 1 cut(s) 286
SfcI CTRYAG 1 cut(s) 413
Sse9I AATT 7 cut(s) 16, 50, 113, 341, 432, 464, 500
SspMI CTAG 1 cut(s) 455
StyD4I CCNGG 1 cut(s) 548
StyI CCWWGG 1 cut(s) 507
TaaI ACNGT 2 cut(s) 810, 827
TaqI TCGA 1 cut(s) 700
TasI AATT 7 cut(s) 16, 50, 113, 341, 432, 464, 500
TfiI GAWTC 5 cut(s) 451, 619, 727, 745, 763
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TscAI CASTG 1 cut(s) 491
TseFI GTSAC 1 cut(s) 827
TseI GCWGC 1 cut(s) 632
Tsp45I GTSAC 1 cut(s) 827
TspRI CASTG 1 cut(s) 491
XapI RAATTY 3 cut(s) 50, 341, 500
XbaI TCTAGA 1 cut(s) 454
XcmI CCANNNNNNNNNTGG 1 cut(s) 701
XmnI GAANNNNTTC 1 cut(s) 465
XspI CTAG 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.