pycom07g08380

ribonuclease H protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
7762654 .. 7770257
7604 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g08380.2

Sequence Viewer

Length: 5604 bp
ATGATTGTTAGCAGAAATAACTCCCTACTTGTTCCATTCTTAAAGTTACAAAAACACAAAAACTTGAACAATAGAAGTTCGGGATCGATTAGCATGGGCACTGATGAAGAAGACATAGGTATGCTGTGTTGTTGTATTGCAATGAATTATACTCCATCCAAACACTTCCAAGTCCGTCAGTATTCAATTCAAAAACATAAATTTTATGTTATCTGTATGTTTTTCAGACAAAGAAGAAGTAAGTCTTCAACAATCTGGCCTAGTTTGCTCAACAGATGCTCCAAGATATTTCAAAACAAAATCACAGCACTTGCAACTCTTAGTGGCTCTTCTGTCAACAATCTTCCCCTTCTTAGCATGCAATTTTTTCAAAGAATAAAATGTTGTCTCTTGTTAGCAGGAATCATTGCTAGCTTGTTCCATTTCAAAGTTACAAAAAACTTGAACAATAGAATGTCATTGACTTCAATGACTGTAGATACAGATTGTTTGAATGAAACTCTCCTCATGACTCAGACTTGGTTACTTAAAATCCAAAGCATTCCAAAAGCCACAGTTTTTATATCCAATCTGGTTACATGTATTTTGAAATACAGGAAATCTTATAGATTGGGTAAACTGTGTATCAAATTCAAATGCAGTCATTCATATATGAAGTATGAGATACCCAATAGTTTTACCAGAAGTTCCAAAAGTTCGGGGTCACCATCAGCTAGTGCACTAGCATCAGATTTTGTCTCCTATCAAAGTGAAGGAATAAAAGAACCTACCTCAGGTTTGGGGCATATTTCAATTCCTTACAACATCTTCAAAACATTTCACTTTCATACCTTAAGTACTATTTTATTTCAAAATAATACATCCGTTACATTTTCCATCCATGAATCCGTTAACTTCTCAAAAAAAAAAAAAAAGGGTAAGTTACATTTTCATACCTCAGGTTTAGGGCATATTTCAATTCCTTACAACATCCTCAAAAAATTTCACTTTGATATCTTAAGTACTATTTTATTTCAAAATAATACATTCGTTACATTTTCTATCCATGGATCTGTGTGTCACGTGGCAAAAAAAAAAAATTTAATTTCTTTTTTAAAACTTAAATTTTCTCAAAAAAAAAAAAAAAAACCATTATCCCCTCCCCGCGACCCACATCCCCGAAGAACCCCAAAAATTGAAGAGGAAGGGGAAAAAAAAATTCCCAAACCCATTTTCCCCACCTGTAAGAACAAGAAGAGGAAAAAAAAAAAAAATAAACAAATTGCAACCCCCCCCCCCCCCCCCCCCCAAAAAAAAAAGTTCCCCACCTGCAAGAAGAAGAAGAAGAGGAAGAGGGAGAAAAAAAAAAAAAAAAAAAAAAAAAAACTACAACCCGGTTCGTCCCCAAACGCCCCCCCCCTAGCGCGCCTACGACCCAACGACCAACCTCCCCTCCCTCCCCTCCTCTCAGGACCCCGCGACCCACCTCCCTTGCACAGAGACCCCGAATCACACCTAATCTCGAGTGGTTTTGTGGATTTTTGGACTGGTTTTGTGGTAGATCCACCTAATCTGGGGTGGGATTTTTTAGGGTGGGTGATGGGGGATGGGAGAGAGGGGTGGCTCGGGTGGGATTTTGGGGTGGGTGATGATGGATGGGAGAAGGGGGTGGATCGGGGTTGGGTTTTTTTTTTTTTTTTTTTTTTTAAATTCAGGTTAAAAAAAAAAAATTCTTTTTTGCCACGTGGCATATATGTGGCAACCATGTCAGCACTTAACAGATCTATGGATAAAAAATGTTGTAAGGAATTGAAATATGCCCCAAACATGAGGTATGAAAATTCAGGTTTTAAAAAAAAGAATTTTTTTTTTTTTTGCCACGTGGCACATATTTGGCAACAACGTAACATATATGTAGCAGCCACGTTAGTACTTAACAGATCCATGGATGGAAAATGTAATGGATTAAAGATGTTCAAAGAGATAATTAAAGCAGACCTTACATGCTGCACATCGAAGTGGAAAACGAATCAAAATTTTAAACATAAAGATACAATTAAAGGTAATGGATGCATGATCTTTTCTTGTGGCAATCAATGGACCAAATTCATCAAGTCACATTGGGCCATCCAAAAAGAAAAATTGAGCAAAGTACCAAACACCACAAACAACACAAATTTGTTCAAACGTATTGTACCTCATTTGGGAGTTAAAAACTTAAAATGGCACATGGAAAAAATGTTAATTAATTTGTACATCTCCCTTCCCAGTGTTGTACCCCTCAAGAACGTTCACATCCACAACTCATCTTGTTATGATGTTAAAATTATGAAGCACAAATGTGCATGCACGCGAGAGTTAATATCTTACAATGCCAAACACAGTAACTCAACTTGTTCACTAATATTCTGCAATTGGAAAAGGAAAAATGTATTCCTGGTGAATACCTGGCAAAGCATGGCACAAGTCCTTCATAGGGAAAGGCATGGCAGTTTGCTTTTAATAGAAGCAGCACATGTGGTCACCTCTGTCTTCCTCTGCCATTTTTTTTATCGATTTGTTTATGAAAGTAGCTATTCTACAAGATATAACGTGACAGGTCTTAGCAAGAGAAGTTGTCGGAGCATGAAAAAATTCATTGCAGAACTGCCCAAGAGTATACTTAAACTAAACATATGGCAACATAGATTTTTTACAAGTATAATTTACAAATGCATTTCATGGTTCTTTGCCGGGAATTTAAATTTCAGAAAACTATCGTCTGGTATATTTCATATTGAATACACAGCAATAATAGTAAGGTACTTGAATCCACCAGTTACGAGAATTTTAACAATAAAACAACAAAACTCCGAAGTTCTTTTTGCTGCTCCAAATGGATCAGCAAAGTATGGCATGAAGAAGGAAAAAAAATATTTCAGTATTATAGACAGACTTCAATACAATAAGATTAAGTACCTCGACAGCAACTCAGAAATCCATGATCAATCCTCATCACCATCAATGTTCTTAGATGACTGTGACATCTTAGATCGTCCAAATTTACCTTCAGAACAAGATATGTATTATGTAGCCCAAAAGCCAATTTTTTCGCTAAATCAGGCTAAGGTTTATGTGAGATCAAGCAGGAAAGATTTGTCCTCAGATCAACAAAACAAGGCCCAACCGATTTACCTTCCATGTCAACATTATGCTTTTGACAACTGCAACAAATACCTACCTCTAGAGGGTAATTTAATTGATGTTTCTGTAATCAAAATCCCAAGGTGTCTAATGTTTGTCGAAAACAACTGTATTTCTAACCAATTGGACTACTTTGAGCTTCCCACCGATTACGCGCAAACCATCACCTATTGGGACAGCAGACCCAATGCTGATGTTCCAAGAATTACATTAACAATTGAGCCGGTCGAAGCTCAAGCTCGACGCTTTGTATTTTGGGATAAGCTTGAAAATAGAGCCTTCAGAAAAATGAAAAACAAAAGGCATAGAAAGTGGGTAAGAATAAACATCAGTCAGACAATAGCTCCTTATATAAATCTTTTCTTTTTTTTTTCAACTTTAAGGAATGGCATAAAAAGAAGCTTTAAACAAGGATACAAGAGCTACTATTTTGAACAACACAACTTTTGGTTCTTCATTTCTTTAAAATATCTCTGCATGGGAACAAGGAATAAACGAAGAACAAAATTAACTTCATATGTCAGCCTATATAGCTCCATTTTGTGCCTTCCTAAGGTGAAAATGGCACTTGTTGGAGTAAATATGTTTTTATTTAAATGTTTAAATATATATATATATATATATATATATATTTATTTGTGTTTTATAAGGAGTTATCTCCTCTTAAATATGAAACGTGGGATTCCTTTTCTATATAGAGAAGAAGATCAGGTTATTAAGCATATTCAAACCGTTTTATTCAAACGTTTGACTAATAATTGTGCTGATAAATATTCAAACGTTTTGACTAATATTTATGTAAAACAACCCCTAGGCATAGAAAAGGACAATCATCAGATGTACTATATATATATATATATTCAAACCGTTTTGCCCTGTAATACGCAATTACTTTATGTTTTGGTTTTTCTGTTTTGTCCAGCCTTCACGTCCTCATTAATCTCTCAAATTCTCAACGTCTTTTTCTTCTATAGTATAGATAGTGATATAGTTTTGGTAAGCAACATATTGAGAGGGTGTGAGTTCGAAGGTTCTTCCACTGTGCAAGGAAGAACTTTATCTGAAGAAGGTTCTGGGCTGTTTTATCTTGGGGACGACGTGATGTTTGTGAACTGCTTCGACTTAGTCTGCGACTCATCCCAAGAATCATTCACTACTCAAGATTCAACAATTTTAAGACGATACCAATCTGCCATGGAATCTGAAAACAACACCACACTGGACCTTAACAAGCCTTCCAAGTTTGAGGGTCTCCACTTTAAGCGTTGGAGGCAGAAAATGTTATTTTTTCTCACCACAAAAAGATTGGCTTCATTTTGCACCACTGTCAAACCAACTCTCCCTGAAGAGCCCACTATTGCACAGACCAAAGCTTCACAAACATGGATTGAAAATGATTTTCTTGCTAAGAATTATATTCTAAATGGATTGTCTGATGACCTTTATGATTACTACTCTGATTATGGCACTGCTAAAGATTTATGGGAGGCACTTCAGAAAAAATATGACACTGAGGAAGCTGGGGCTAAGAAATTTGTTGTTAGTCGTTATTTGAAATATCAGATGGTTGATGATAAATCTGTTGAAGCACAATCTCATGAATTACAGAAAATTGCTCATGAAATTATTTCTGAAGGCATGGTTTTAAATGATCAATTTCAGGTTGCTGTCATCATTGATAAATTGCCACCAACCTGGAAAAATTTCAAGAACTCACTCCGCCACAAGACAAAAGGGTTCTCCTTGGAAAGATCGATCACTCGACTTCGCATTGAGGAAGAGGCCAGGAAACAAGAAATGAAGGAGGAAATTCTAGTCGTGTCAAGCAACCAAAAGGCTACCAACTTTAACCGGAACCAGACTCTAGCTGTGCTGAAGCCAAATGGGAAGAACATGAAGATTCAGAACAAGAATCACAACAAACGCCTCAACAACAACACAAACAAGGTTCAGAATCAAAATCCCTCTCATCCTCAGAATAGTTTGAATGCTATAACTATCACAAGCTGGGCCATCTTGCCCGGAATTGCAAAAATAAGAAAAGCCCTGATATCAGAAATCAACTTTGTTGATGGATCCAAGGGGTGGTGGGTGGACACTAGCGCTTCTCGCCATGTTTGCTATGACCGTTCTCTTTTCAAGACCTATTATGTGGCTGAGGGAATGAAGGTGTTGTTGGGTGATTCACACTCAACTGATATTGCTGGTACTGGAGAGGTGGAGCTGAGGTTCACCTCTGGAAAAACCATGATACTGAAAGATGTGATGCATGCTCCAACGATAAGGAAAAATTTGGTCTCTGGCTTTCTTCTCAACAAGGCTGGATTTACTCAAACCATTGGAGCAGATATGTATACTCTTACTAGAAATGGGGTTTTTGTGGGAAAGGGATATGCTACTAATGGAATGTTTAAATTGAATGTTGATGCTATTAAAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

1868

Amino Acids

216.25

Weight (kDa)

9.76

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00980
fragaria_vesca FvH4_1g25682 FvH4_2g13961 FvH4_2g20162 FvH4_2g24753 FvH4_3g12191 FvH4_3g12632 FvH4_3g16171 FvH4_4g05871 FvH4_4g05873 FvH4_4g10121 FvH4_4g15488 FvH4_4g23911 FvH4_4g27782 FvH4_5g08912 FvH4_5g23001 FvH4_5g24552 FvH4_5g32801 FvH4_5g32802 FvH4_6g05093 FvH4_6g19722 FvH4_6g20391 FvH4_6g33792 FvH4_7g01381 FvH4_7g16761 FvH4_7g16761 FvH4_7g16761
malus_domestica MD01G1082500.v1.1 MD15G1436400.v1.1
prunus_persica Prupe.2G021400_v2.0.a1 Prupe.2G052400_v2.0.a1 Prupe.2G065000_v2.0.a1 Prupe.2G187700_v2.0.a1 Prupe.2G187800_v2.0.a1 Prupe.2G189900_v2.0.a1 Prupe.2G191300_v2.0.a1 Prupe.2G191700_v2.0.a1 Prupe.4G265600_v2.0.a1 Prupe.7G014200_v2.0.a1 Prupe.7G039000_v2.0.a1
pyrus_communis pycom01g05590 pycom01g05910 pycom02g12230 pycom02g25840 pycom03g15580 pycom04g04480 pycom05g09230 pycom05g23350 pycom05g23360 pycom07g08380 pycom09g01980 pycom09g01990 pycom11g18190 pycom11g18200 pycom11g21580 pycom13g04160 pycom15g25800 pycom16g16210 pycom16g17230 pycom16g24560 pycom16g25700 pycom17g11020
rosa_chinensis RchiOBHm_Chr1g0359981 RchiOBHm_Chr2g0151961 RchiOBHm_Chr2g0171331 RchiOBHm_Chr5g0081471 RchiOBHm_Chr6g0283031 RchiOBHm_Chr7g0197111 RchiOBHm_Chr7g0222601
rosa_laevigata RLG00000027843 RLG00000027845 RLG00000030065
rosa_multiflora Rmu_sc0000381.1_g000031 Rmu_sc0001179.1_g000035 Rmu_sc0001616.1_g000046 Rmu_sc0001851.1_g000032 Rmu_sc0002152.1_g000013 Rmu_sc0004031.1_g000015 Rmu_sc0004645.1_g000003 Rmu_sc0007393.1_g000001 Rmu_sc0008949.1_g000003 Rmu_sc0009799.1_g000011 Rmu_sc0011614.1_g000001 Rmu_sc0011699.1_g000009 Rmu_sc0019280.1_g000001 Rmu_sc0023984.1_g000001 Rmu_ssc0000050.1_g000036
rosa_roxburghii Rroxscaffold_1G00022650 Rroxscaffold_1G00033480 Rroxscaffold_3G00270250 Rroxscaffold_4G00296600 Rroxscaffold_4G00296760 Rroxscaffold_6G00409840
rosa_rugosa Rorug01G0273800 Rorug01G0273900 Rorug01G0274000
rosa_samantha Rh1AG287300 Rh1AG288100 Rh1BG253000 Rh1BG253500 Rh1BG399800 Rh1CG270400 Rh1CG271000 Rh1DG282000 Rh1DG282500 Rh4DG126500 Rh5DG194600 Rh5DG461100
rosa_wichuraiana Rw0G009130 Rw1G002590 Rw1G008490 Rw1G012210 Rw1G014290 Rw1G014490 Rw1G025510 Rw2G025840 Rw2G026170 Rw2G036510 Rw3G003050 Rw4G009270 Rw5G002350 Rw5G013930 Rw5G019500 Rw5G025890 Rw5G029960 Rw5G032360 Rw6G009890 Rw6G015670 Rw6G015860 Rw7G010030 Rw7G032600 Rw7G032770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3809
AarI CACCTGC 1 cut(s) 1316
Acc36I ACCTGC 1 cut(s) 1316
AccB7I CCANNNNNTGG 1 cut(s) 5247
AccI GTMKAC 2 cut(s) 2638, 5516
AccII CGCG 5 cut(s) 1146, 1405, 1458, 2332, 3317
AciI CCGC 3 cut(s) 1144, 1456, 4882
AclI AACGTT 3 cut(s) 2268, 3907, 3942
AclWI GGATC 8 cut(s) 91, 1057, 1535, 1659, 1914, 2866, 5232, 5245
AcuI CTGAAG 7 cut(s) 3012, 3427, 4245, 4527, 4640, 4815, 5057
AcvI CACGTG 3 cut(s) 1063, 1724, 1861
AfeI AGCGCT 1 cut(s) 5266
AfiI CCNNNNNNNGG 7 cut(s) 773, 1553, 2183, 2455, 3206, 3715, 5247
AflII CTTAAG 2 cut(s) 832, 997
AflIII ACRYGT 2 cut(s) 578, 2494
AjiI CACGTC 2 cut(s) 4092, 4261
AjnI CCWGG 4 cut(s) 2415, 2426, 4856, 4946
AjuI GAANNNNNNNTTGG 6 cut(s) 1196, 1228, 3010, 3042, 5321, 5353
AleI CACNNNNGTG 1 cut(s) 2319
AloI GAACNNNNNNTCC 2 cut(s) 5375, 5407
Alw21I GWGCWC 1 cut(s) 721
Alw26I GTCTC 5 cut(s) 392, 742, 1473, 4418, 5464
Alw44I GTGCAC 1 cut(s) 717
AlwI GGATC 8 cut(s) 91, 1057, 1535, 1659, 1914, 2866, 5232, 5245
Ama87I CYCGRG 2 cut(s) 1501, 1604
Aor51HI AGCGCT 1 cut(s) 5266
AoxI GGCC 5 cut(s) 257, 2103, 3138, 4944, 5172
ApaLI GTGCAC 1 cut(s) 717
ApeKI GCWGC 4 cut(s) 1898, 1986, 2489, 2846
ArsI GACNNNNNNTTYG 2 cut(s) 4250, 4282
AseI ATTAAT 2 cut(s) 2226, 4100
Asp700I GAANNNNTTC 3 cut(s) 2612, 4277, 4865
AspA2I CCTAGG 1 cut(s) 3973
AspLEI GCGC 4 cut(s) 1405, 1407, 3319, 5267
AspS9I GGNCC 6 cut(s) 1451, 2079, 2103, 3139, 4384, 5172
AsuC2I CCSGG 3 cut(s) 1374, 2713, 5184
AsuII TTCGAA 1 cut(s) 4188
AsuNHI GCTAGC 1 cut(s) 410
AvaI CYCGRG 2 cut(s) 1501, 1604
AvaII GGWCC 3 cut(s) 1451, 2079, 4384
AvrII CCTAGG 1 cut(s) 3973
AxyI CCTNAGG 3 cut(s) 772, 937, 3714
BaeGI GKGCMC 2 cut(s) 101, 721
BamHI GGATCC 1 cut(s) 5237
BanII GRGCYC 1 cut(s) 4515
BbrPI CACGTG 3 cut(s) 1063, 1724, 1861
BbsI GAAGAC 3 cut(s) 117, 237, 2503
Bbv12I GWGCWC 1 cut(s) 721
BbvCI CCTCAGC 2 cut(s) 5319, 5387
BbvI GCAGC 4 cut(s) 1910, 1973, 2501, 2833
BciT130I CCWGG 4 cut(s) 2417, 2428, 4858, 4948
BciVI GTATCC 1 cut(s) 3569
BclI TGATCA 2 cut(s) 2962, 4813
BcnI CCSGG 3 cut(s) 1374, 2713, 5184
BcoDI GTCTC 5 cut(s) 392, 742, 1473, 4418, 5464
BfmI CTRYAG 2 cut(s) 474, 4132
BfoI RGCGCY 1 cut(s) 5268
BfrI CTTAAG 2 cut(s) 832, 997
BfuAI ACCTGC 1 cut(s) 1316
BfuI GTATCC 1 cut(s) 3569
BglII AGATCT 1 cut(s) 1760
BisI GCNGC 4 cut(s) 1899, 1987, 2490, 2847
BlnI CCTAGG 1 cut(s) 3973
BlsI GCNGC 4 cut(s) 1900, 1988, 2491, 2848
BmcAI AGTACT 3 cut(s) 838, 1003, 1911
Bme1390I CCNGG 7 cut(s) 1374, 2417, 2428, 2713, 4858, 4948, 5184
Bme18I GGWCC 3 cut(s) 1451, 2079, 4384
BmeT110I CYCGRG 2 cut(s) 1501, 1604
BmgBI CACGTC 2 cut(s) 4092, 4261
BmgT120I GGNCC 6 cut(s) 1451, 2079, 2103, 3139, 4384, 5172
BmiI GGNNCC 3 cut(s) 1453, 5018, 5239
BmrFI CCNGG 7 cut(s) 1374, 2417, 2428, 2713, 4858, 4948, 5184
BmrI ACTGGG 1 cut(s) 2241
BmsI GCATC 5 cut(s) 266, 734, 2039, 5418, 5578
BmtI GCTAGC 1 cut(s) 414
BmuI ACTGGG 1 cut(s) 2241
BpiI GAAGAC 3 cut(s) 117, 237, 2503
BpmI CTGGAG 1 cut(s) 5394
Bpu10I CCTNAGC 3 cut(s) 3084, 5319, 5387
Bpu14I TTCGAA 1 cut(s) 4188
BpuEI CTTGAG 3 cut(s) 2246, 3381, 4305
BpuMI CCSGG 3 cut(s) 1374, 2713, 5184
Bsa29I ATCGAT 3 cut(s) 86, 2533, 4916
BsaAI YACGTR 3 cut(s) 1063, 1724, 1861
BsaBI GATNNNNATC 1 cut(s) 4348
BsaI GGTCTC 3 cut(s) 1473, 4418, 5464
BsaJI CCNNGG 7 cut(s) 1045, 1923, 3242, 3973, 4356, 4905, 5241
BsaWI WCCGGW 1 cut(s) 5013
Bsc4I CCNNNNNNNGG 7 cut(s) 773, 1553, 2183, 2455, 3206, 3715, 5247
Bse118I RCCGGY 1 cut(s) 3385
Bse1I ACTGG 5 cut(s) 1531, 2247, 2795, 4386, 5377
Bse21I CCTNAGG 3 cut(s) 772, 937, 3714
Bse3DI GCAATG 3 cut(s) 147, 405, 2616
Bse8I GATNNNNATC 1 cut(s) 4348
BseBI CCWGG 4 cut(s) 2417, 2428, 4858, 4948
BseCI ATCGAT 3 cut(s) 86, 2533, 4916
BseDI CCNNGG 7 cut(s) 1045, 1923, 3242, 3973, 4356, 4905, 5241
BseJI GATNNNNATC 1 cut(s) 4348
BseLI CCNNNNNNNGG 7 cut(s) 773, 1553, 2183, 2455, 3206, 3715, 5247
BseMI GCAATG 3 cut(s) 147, 405, 2616
BseNI ACTGG 5 cut(s) 1531, 2247, 2795, 4386, 5377
BsePI GCGCGC 1 cut(s) 1403
BseRI GAGGAG 3 cut(s) 494, 1433, 3812
BseSI GKGCMC 2 cut(s) 101, 721
BseXI GCAGC 4 cut(s) 1910, 1973, 2501, 2833
BseYI CCCAGC 2 cut(s) 4682, 5169
BsgI GTGCAG 1 cut(s) 1972
Bsh1236I CGCG 5 cut(s) 1146, 1405, 1458, 2332, 3317
Bsh1285I CGRYCG 1 cut(s) 3390
BshFI GGCC 5 cut(s) 259, 2105, 3140, 4946, 5174
BshVI ATCGAT 3 cut(s) 86, 2533, 4916
BsiEI CGRYCG 1 cut(s) 3390
BsiHKAI GWGCWC 1 cut(s) 721
BsiHKCI CYCGRG 2 cut(s) 1501, 1604
BsiSI CCGG 5 cut(s) 1374, 2712, 3386, 5014, 5184
BslFI GGGAC 3 cut(s) 1366, 3350, 4268
BslI CCNNNNNNNGG 7 cut(s) 773, 1553, 2183, 2455, 3206, 3715, 5247
BsmAI GTCTC 5 cut(s) 392, 742, 1473, 4418, 5464
BsmFI GGGAC 3 cut(s) 1366, 3350, 4268
BsmI GAATGC 2 cut(s) 540, 5155
BsnI GGCC 5 cut(s) 259, 2105, 3140, 4946, 5174
Bso31I GGTCTC 3 cut(s) 1473, 4418, 5464
BsoBI CYCGRG 2 cut(s) 1501, 1604
Bsp119I TTCGAA 1 cut(s) 4188
Bsp1286I GDGCHC 3 cut(s) 101, 721, 4515
Bsp1407I TGTACA 1 cut(s) 2232
Bsp19I CCATGG 3 cut(s) 1045, 1923, 4356
BspACI CCGC 3 cut(s) 1144, 1456, 4882
BspANI GGCC 5 cut(s) 259, 2105, 3140, 4946, 5174
BspDI ATCGAT 3 cut(s) 86, 2533, 4916
BspFNI CGCG 5 cut(s) 1146, 1405, 1458, 2332, 3317
BspHI TCATGA 3 cut(s) 507, 4759, 4780
BspLI GGNNCC 3 cut(s) 1453, 5018, 5239
BspMI ACCTGC 1 cut(s) 1316
BspOI GCTAGC 1 cut(s) 414
BspPI GGATC 8 cut(s) 91, 1057, 1535, 1659, 1914, 2866, 5232, 5245
BspQI GCTCTTC 2 cut(s) 334, 4503
BspT104I TTCGAA 1 cut(s) 4188
BspTI CTTAAG 2 cut(s) 832, 997
BspTNI GGTCTC 3 cut(s) 1473, 4418, 5464
BsrDI GCAATG 3 cut(s) 147, 405, 2616
BsrFI RCCGGY 1 cut(s) 3385
BsrGI TGTACA 1 cut(s) 2232
BsrI ACTGG 5 cut(s) 1531, 2247, 2795, 4386, 5377
BssAI RCCGGY 1 cut(s) 3385
BssECI CCNNGG 7 cut(s) 1045, 1923, 3242, 3973, 4356, 4905, 5241
BssHII GCGCGC 1 cut(s) 1403
BssNAI GTATAC 2 cut(s) 2639, 5517
BssT1I CCWWGG 7 cut(s) 1045, 1923, 3242, 3973, 4356, 4905, 5241
Bst1107I GTATAC 2 cut(s) 2639, 5517
Bst2UI CCWGG 4 cut(s) 2417, 2428, 4858, 4948
Bst6I CTCTTC 7 cut(s) 334, 1173, 1229, 1319, 1325, 4503, 4935
BstAFI CTTAAG 2 cut(s) 832, 997
BstAUI TGTACA 1 cut(s) 2232
BstBAI YACGTR 3 cut(s) 1063, 1724, 1861
BstBI TTCGAA 1 cut(s) 4188
BstC8I GCNNGC 6 cut(s) 359, 412, 1405, 2326, 2330, 5433
BstDSI CCRYGG 3 cut(s) 1045, 1923, 4356
BstEII GGTNACC 2 cut(s) 702, 2500
BstENI CCTNNNNNAGG 2 cut(s) 771, 3713
BstFNI CGCG 5 cut(s) 1146, 1405, 1458, 2332, 3317
BstH2I RGCGCY 1 cut(s) 5268
BstHHI GCGC 4 cut(s) 1405, 1407, 3319, 5267
BstMAI GTCTC 5 cut(s) 392, 742, 1473, 4418, 5464
BstMCI CGRYCG 1 cut(s) 3390
BstMWI GCNNNNNNNGC 5 cut(s) 265, 3693, 4432, 5271, 5280
BstNI CCWGG 4 cut(s) 2417, 2428, 4858, 4948
BstNSI RCATGY 6 cut(s) 361, 582, 1986, 2328, 2498, 5435
BstPI GGTNACC 2 cut(s) 702, 2500
BstSCI CCNGG 7 cut(s) 1372, 2415, 2426, 2711, 4856, 4946, 5182
BstSFI CTRYAG 2 cut(s) 474, 4132
BstSLI GKGCMC 2 cut(s) 101, 721
BstUI CGCG 5 cut(s) 1146, 1405, 1458, 2332, 3317
BstV1I GCAGC 4 cut(s) 1910, 1973, 2501, 2833
BstV2I GAAGAC 3 cut(s) 117, 237, 2503
BstX2I RGATCY 5 cut(s) 1049, 1540, 1760, 1919, 5237
BstXI CCANNNNNNTGG 1 cut(s) 4857
BstYI RGATCY 5 cut(s) 1049, 1540, 1760, 1919, 5237
BstZ17I GTATAC 2 cut(s) 2639, 5517
Bsu15I ATCGAT 3 cut(s) 86, 2533, 4916
Bsu36I CCTNAGG 3 cut(s) 772, 937, 3714
BsuI GTATCC 1 cut(s) 3569
BsuRI GGCC 5 cut(s) 259, 2105, 3140, 4946, 5174
BsuTUI ATCGAT 3 cut(s) 86, 2533, 4916
BtgI CCRYGG 3 cut(s) 1045, 1923, 4356
BtrI CACGTC 2 cut(s) 4092, 4261
BtsI GCAGTG 1 cut(s) 4629
BtsIMutI CAGTG 7 cut(s) 99, 2254, 4200, 4379, 4485, 4629, 4671
BveI ACCTGC 1 cut(s) 1316
Cac8I GCNNGC 6 cut(s) 359, 412, 1405, 2326, 2330, 5433
CciI TCATGA 3 cut(s) 507, 4759, 4780
CfoI GCGC 4 cut(s) 1405, 1407, 3319, 5267
Cfr10I RCCGGY 1 cut(s) 3385
Cfr13I GGNCC 6 cut(s) 1451, 2079, 2103, 3139, 4384, 5172
ClaI ATCGAT 3 cut(s) 86, 2533, 4916
CseI GACGC 1 cut(s) 3414
CspCI CAANNNNNGTGG 2 cut(s) 1452, 1487
Eam1104I CTCTTC 7 cut(s) 334, 1173, 1229, 1319, 1325, 4503, 4935
EarI CTCTTC 7 cut(s) 334, 1173, 1229, 1319, 1325, 4503, 4935
EciI GGCGGA 1 cut(s) 4871
Eco130I CCWWGG 7 cut(s) 1045, 1923, 3242, 3973, 4356, 4905, 5241
Eco24I GRGCYC 1 cut(s) 4515
Eco31I GGTCTC 3 cut(s) 1473, 4418, 5464
Eco32I GATATC 2 cut(s) 994, 5214
Eco47I GGWCC 3 cut(s) 1451, 2079, 4384
Eco47III AGCGCT 1 cut(s) 5266
Eco57I CTGAAG 7 cut(s) 3012, 3427, 4245, 4527, 4640, 4815, 5057
Eco72I CACGTG 3 cut(s) 1063, 1724, 1861
Eco81I CCTNAGG 3 cut(s) 772, 937, 3714
Eco88I CYCGRG 2 cut(s) 1501, 1604
Eco91I GGTNACC 2 cut(s) 702, 2500
EcoNI CCTNNNNNAGG 2 cut(s) 771, 3713
EcoO109I RGGNCCY 1 cut(s) 1451
EcoO65I GGTNACC 2 cut(s) 702, 2500
EcoRII CCWGG 4 cut(s) 2415, 2426, 4856, 4946
EcoRV GATATC 2 cut(s) 994, 5214
EcoT14I CCWWGG 7 cut(s) 1045, 1923, 3242, 3973, 4356, 4905, 5241
EcoT22I ATGCAT 3 cut(s) 2054, 2696, 5433
EcoT38I GRGCYC 1 cut(s) 4515
ErhI CCWWGG 7 cut(s) 1045, 1923, 3242, 3973, 4356, 4905, 5241
FalI AAGNNNNNCTT 6 cut(s) 229, 261, 1962, 1994, 4456, 4488
FaqI GGGAC 3 cut(s) 1366, 3350, 4268
FauI CCCGC 2 cut(s) 1151, 1463
FauNDI CATATG 2 cut(s) 2654, 3679
FbaI TGATCA 2 cut(s) 2962, 4813
FblI GTMKAC 2 cut(s) 2638, 5516
Fnu4HI GCNGC 4 cut(s) 1899, 1987, 2490, 2847
FriOI GRGCYC 1 cut(s) 4515
Fsp4HI GCNGC 4 cut(s) 1899, 1987, 2490, 2847
GlaI GCGC 4 cut(s) 1404, 1406, 3318, 5266
GluI GCNGC 4 cut(s) 1899, 1987, 2490, 2847
GsaI CCCAGC 2 cut(s) 4686, 5173
GsuI CTGGAG 1 cut(s) 5394
HaeII RGCGCY 1 cut(s) 5268
HaeIII GGCC 5 cut(s) 259, 2105, 3140, 4946, 5174
HapII CCGG 5 cut(s) 1374, 2712, 3386, 5014, 5184
HgaI GACGC 1 cut(s) 3414
HhaI GCGC 4 cut(s) 1405, 1407, 3319, 5267
Hin6I GCGC 4 cut(s) 1403, 1405, 3317, 5265
HinP1I GCGC 4 cut(s) 1403, 1405, 3317, 5265
HincII GTYRAC 3 cut(s) 337, 892, 3164
HindII GTYRAC 3 cut(s) 337, 892, 3164
HindIII AAGCTT 3 cut(s) 3425, 3562, 4533
HpaI GTTAAC 1 cut(s) 892
HpaII CCGG 5 cut(s) 1374, 2712, 3386, 5014, 5184
Hpy99I CGWCG 2 cut(s) 3408, 4262
HpyF10VI GCNNNNNNNGC 5 cut(s) 265, 3693, 4432, 5271, 5280
HspAI GCGC 4 cut(s) 1403, 1405, 3317, 5265
Ksp22I TGATCA 2 cut(s) 2962, 4813
KspAI GTTAAC 1 cut(s) 892
LguI GCTCTTC 2 cut(s) 334, 4503
LmnI GCTCC 8 cut(s) 284, 2601, 2854, 3511, 3701, 5383, 5440, 5504
Lsp1109I GCAGC 4 cut(s) 1910, 1973, 2501, 2833
LweI GCATC 5 cut(s) 266, 734, 2039, 5418, 5578
MfeI CAATTG 3 cut(s) 2392, 3284, 3378
MflI RGATCY 5 cut(s) 1049, 1540, 1760, 1919, 5237
MhlI GDGCHC 3 cut(s) 101, 721, 4515
MlyI GAGTC 3 cut(s) 505, 4289, 5017
MmeI TCCRAC 4 cut(s) 2579, 3715, 4409, 5462
Mph1103I ATGCAT 3 cut(s) 2054, 2696, 5433
MroXI GAANNNNTTC 3 cut(s) 2612, 4277, 4865
MslI CAYNNNNRTG 5 cut(s) 119, 1733, 1996, 2319, 4543
MspCI CTTAAG 2 cut(s) 832, 997
MspI CCGG 5 cut(s) 1374, 2712, 3386, 5014, 5184
MspR9I CCNGG 7 cut(s) 1374, 2417, 2428, 2713, 4858, 4948, 5184
MunI CAATTG 3 cut(s) 2392, 3284, 3378
Mva1269I GAATGC 2 cut(s) 540, 5155
MvaI CCWGG 4 cut(s) 2417, 2428, 4858, 4948
MvnI CGCG 5 cut(s) 1146, 1405, 1458, 2332, 3317
MwoI GCNNNNNNNGC 5 cut(s) 265, 3693, 4432, 5271, 5280
NciI CCSGG 3 cut(s) 1374, 2713, 5184
NcoI CCATGG 3 cut(s) 1045, 1923, 4356
NdeI CATATG 2 cut(s) 2654, 3679
NheI GCTAGC 1 cut(s) 410
NlaIV GGNNCC 3 cut(s) 1453, 5018, 5239
NmuCI GTSAC 6 cut(s) 702, 1058, 2094, 2500, 2572, 2999
NsiI ATGCAT 3 cut(s) 2054, 2696, 5433
NspI RCATGY 6 cut(s) 361, 582, 1986, 2328, 2498, 5435
NspV TTCGAA 1 cut(s) 4188
OliI CACNNNNGTG 1 cut(s) 2319
PacI TTAATTAA 1 cut(s) 2226
PaeI GCATGC 3 cut(s) 361, 2328, 5435
PaeR7I CTCGAG 1 cut(s) 1501
PagI TCATGA 3 cut(s) 507, 4759, 4780
PaqCI CACCTGC 1 cut(s) 1316
PauI GCGCGC 1 cut(s) 1403
PciI ACATGT 2 cut(s) 578, 2494
PciSI GCTCTTC 2 cut(s) 334, 4503
PctI GAATGC 2 cut(s) 540, 5155
PdmI GAANNNNTTC 3 cut(s) 2612, 4277, 4865
PflFI GACNNNGTC 1 cut(s) 4286
PflMI CCANNNNNTGG 1 cut(s) 5247
PkrI GCNGC 4 cut(s) 1900, 1988, 2491, 2848
PleI GAGTC 3 cut(s) 505, 4289, 5017
PmaCI CACGTG 3 cut(s) 1063, 1724, 1861
PmlI CACGTG 3 cut(s) 1063, 1724, 1861
PpsI GAGTC 3 cut(s) 505, 4289, 5017
Ppu21I YACGTR 3 cut(s) 1063, 1724, 1861
PpuMI RGGWCCY 1 cut(s) 1451
PscI ACATGT 2 cut(s) 578, 2494
PshBI ATTAAT 2 cut(s) 2226, 4100
PsiI TTATAA 1 cut(s) 3809
Psp1406I AACGTT 3 cut(s) 2268, 3907, 3942
Psp5II RGGWCCY 1 cut(s) 1451
Psp6I CCWGG 4 cut(s) 2415, 2426, 4856, 4946
PspCI CACGTG 3 cut(s) 1063, 1724, 1861
PspEI GGTNACC 2 cut(s) 702, 2500
PspFI CCCAGC 2 cut(s) 4682, 5169
PspGI CCWGG 4 cut(s) 2415, 2426, 4856, 4946
PspN4I GGNNCC 3 cut(s) 1453, 5018, 5239
PspPI GGNCC 6 cut(s) 1451, 2079, 2103, 3139, 4384, 5172
PspPPI RGGWCCY 1 cut(s) 1451
PsuI RGATCY 5 cut(s) 1049, 1540, 1760, 1919, 5237
PsyI GACNNNGTC 1 cut(s) 4286
PteI GCGCGC 1 cut(s) 1403
RseI CAYNNNNRTG 5 cut(s) 119, 1733, 1996, 2319, 4543
SapI GCTCTTC 2 cut(s) 334, 4503
SatI GCNGC 4 cut(s) 1899, 1987, 2490, 2847
Sau96I GGNCC 6 cut(s) 1451, 2079, 2103, 3139, 4384, 5172
ScaI AGTACT 3 cut(s) 838, 1003, 1911
SchI GAGTC 3 cut(s) 505, 4289, 5017
ScrFI CCNGG 7 cut(s) 1374, 2417, 2428, 2713, 4858, 4948, 5184
SduI GDGCHC 3 cut(s) 101, 721, 4515
SfaNI GCATC 5 cut(s) 266, 734, 2039, 5418, 5578
SfcI CTRYAG 2 cut(s) 474, 4132
Sfr274I CTCGAG 1 cut(s) 1501
SfuI TTCGAA 1 cut(s) 4188
SinI GGWCC 3 cut(s) 1451, 2079, 4384
SlaI CTCGAG 1 cut(s) 1501
SmiI ATTTAAAT 2 cut(s) 2721, 3757
SmiMI CAYNNNNRTG 5 cut(s) 119, 1733, 1996, 2319, 4543
SmlI CTYRAG 6 cut(s) 832, 997, 1501, 2261, 3396, 4320
SmoI CTYRAG 6 cut(s) 832, 997, 1501, 2261, 3396, 4320
SphI GCATGC 3 cut(s) 361, 2328, 5435
SsiI CCGC 3 cut(s) 1144, 1456, 4882
SspI AATATT 4 cut(s) 2385, 2894, 3935, 3955
StyD4I CCNGG 7 cut(s) 1372, 2415, 2426, 2711, 4856, 4946, 5182
StyI CCWWGG 7 cut(s) 1045, 1923, 3242, 3973, 4356, 4905, 5241
SwaI ATTTAAAT 2 cut(s) 2721, 3757
TatI WGTACW 5 cut(s) 836, 1001, 1909, 2232, 4002
TscAI CASTG 7 cut(s) 106, 2254, 4207, 4386, 4492, 4636, 4678
TseFI GTSAC 6 cut(s) 702, 1058, 2094, 2500, 2572, 2999
TseI GCWGC 4 cut(s) 1898, 1986, 2489, 2846
Tsp45I GTSAC 6 cut(s) 702, 1058, 2094, 2500, 2572, 2999
TspGWI ACGGA 3 cut(s) 164, 853, 877
TspRI CASTG 7 cut(s) 106, 2254, 4207, 4386, 4492, 4636, 4678
Tth111I GACNNNGTC 1 cut(s) 4286
Van91I CCANNNNNTGG 1 cut(s) 5247
Vha464I CTTAAG 2 cut(s) 832, 997
VneI GTGCAC 1 cut(s) 717
VpaK11BI GGWCC 3 cut(s) 1451, 2079, 4384
VspI ATTAAT 2 cut(s) 2226, 4100
XagI CCTNNNNNAGG 2 cut(s) 771, 3713
XbaI TCTAGA 1 cut(s) 3202
XceI RCATGY 6 cut(s) 361, 582, 1986, 2328, 2498, 5435
XcmI CCANNNNNNNNNTGG 1 cut(s) 4465
XhoI CTCGAG 1 cut(s) 1501
XmaJI CCTAGG 1 cut(s) 3973
XmiI GTMKAC 2 cut(s) 2638, 5516
XmnI GAANNNNTTC 3 cut(s) 2612, 4277, 4865
ZrmI AGTACT 3 cut(s) 838, 1003, 1911
Zsp2I ATGCAT 3 cut(s) 2054, 2696, 5433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.