pycom05g23360
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
25247913 .. 25248628
716 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g23360.1

Sequence Viewer

Length: 630 bp
ATGGTGGAAAATTCTGGAATTGATAACATAGTTGCAATGGTATCAATGATGCATATTGGCATGGCTACCGAACTGAATATGGTAGTGACAATAAAATCATCCGATTGGTGGTTCGACTCAGAGGCTACTATACATGTGTGTAATGATAAGGCACAATTCAAGACATATGAAGCATCAATGGACAATCAAGATATTTTAATGGGGAATCATAATTCCACCAAAAAATTGATATTGCTTAATGTAATATATGTTTTAGAAATTAGAAAGAATCATGTGTCTGCAAATTTATTATGTAAGAACGGCATAAAGACTGTTCTAGAGTCCGACAAGTTAAAAATGTTGAAAATGAGATGTTTTATTAATAATAAAGTGAATTCTTTTGCTTATATTGTTGAATCTTCCTCTCATTTATGGCACTTACATTTAGCATATGTAAATTTTAGATCTTTAGAATACATGCGTACACTTGGTTTGATTGCTTGCAATGATGATTATAATGATAAATGTGAAACATCTATTCAAGCAAAAATGACTAAGAAGCCTTTTCCAACTGCTGAAAGAAATACAAGTTTATTAGACTTAATACATTCTAACATATGTGAATTTAATGGTGTTTTAACAAGAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

210

Amino Acids

23.86

Weight (kDa)

7.07

Isoelectric Point (pI)

37.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pol_BBD PF22936 36 - 101 4.6e-06 Pol polyprotein, beta-barrel domain
gag_pre-integrs PF13976 114 - 177 6e-07 GAG-pre-integrase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00980
fragaria_vesca FvH4_1g25682 FvH4_2g13961 FvH4_2g20162 FvH4_2g24753 FvH4_3g12191 FvH4_3g12632 FvH4_3g16171 FvH4_4g05871 FvH4_4g05873 FvH4_4g10121 FvH4_4g15488 FvH4_4g23911 FvH4_4g27782 FvH4_5g08912 FvH4_5g23001 FvH4_5g24552 FvH4_5g32801 FvH4_5g32802 FvH4_6g05093 FvH4_6g19722 FvH4_6g20391 FvH4_6g33792 FvH4_7g01381 FvH4_7g16761 FvH4_7g16761 FvH4_7g16761
malus_domestica MD01G1082500.v1.1 MD15G1436400.v1.1
prunus_persica Prupe.2G021400_v2.0.a1 Prupe.2G052400_v2.0.a1 Prupe.2G065000_v2.0.a1 Prupe.2G187700_v2.0.a1 Prupe.2G187800_v2.0.a1 Prupe.2G189900_v2.0.a1 Prupe.2G191300_v2.0.a1 Prupe.2G191700_v2.0.a1 Prupe.4G265600_v2.0.a1 Prupe.7G014200_v2.0.a1 Prupe.7G039000_v2.0.a1
pyrus_communis pycom01g05590 pycom01g05910 pycom02g12230 pycom02g25840 pycom03g15580 pycom04g04480 pycom05g09230 pycom05g23350 pycom05g23360 pycom07g08380 pycom09g01980 pycom09g01990 pycom11g18190 pycom11g18200 pycom11g21580 pycom13g04160 pycom15g25800 pycom16g16210 pycom16g17230 pycom16g24560 pycom16g25700 pycom17g11020
rosa_chinensis RchiOBHm_Chr1g0359981 RchiOBHm_Chr2g0151961 RchiOBHm_Chr2g0171331 RchiOBHm_Chr5g0081471 RchiOBHm_Chr6g0283031 RchiOBHm_Chr7g0197111 RchiOBHm_Chr7g0222601
rosa_laevigata RLG00000027843 RLG00000027845 RLG00000030065
rosa_multiflora Rmu_sc0000381.1_g000031 Rmu_sc0001179.1_g000035 Rmu_sc0001616.1_g000046 Rmu_sc0001851.1_g000032 Rmu_sc0002152.1_g000013 Rmu_sc0004031.1_g000015 Rmu_sc0004645.1_g000003 Rmu_sc0007393.1_g000001 Rmu_sc0008949.1_g000003 Rmu_sc0009799.1_g000011 Rmu_sc0011614.1_g000001 Rmu_sc0011699.1_g000009 Rmu_sc0019280.1_g000001 Rmu_sc0023984.1_g000001 Rmu_ssc0000050.1_g000036
rosa_roxburghii Rroxscaffold_1G00022650 Rroxscaffold_1G00033480 Rroxscaffold_3G00270250 Rroxscaffold_4G00296600 Rroxscaffold_4G00296760 Rroxscaffold_6G00409840
rosa_rugosa Rorug01G0273800 Rorug01G0273900 Rorug01G0274000
rosa_samantha Rh1AG287300 Rh1AG288100 Rh1BG253000 Rh1BG253500 Rh1BG399800 Rh1CG270400 Rh1CG271000 Rh1DG282000 Rh1DG282500 Rh4DG126500 Rh5DG194600 Rh5DG461100
rosa_wichuraiana Rw0G009130 Rw1G002590 Rw1G008490 Rw1G012210 Rw1G014290 Rw1G014490 Rw1G025510 Rw2G025840 Rw2G026170 Rw2G036510 Rw3G003050 Rw4G009270 Rw5G002350 Rw5G013930 Rw5G019500 Rw5G025890 Rw5G029960 Rw5G032360 Rw6G009890 Rw6G015670 Rw6G015860 Rw7G010030 Rw7G032600 Rw7G032770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 495
AcsI RAATTY 5 cut(s) 10, 283, 373, 436, 602
AfaI GTAC 1 cut(s) 463
AfiI CCNNNNNNNGG 1 cut(s) 108
AflIII ACRYGT 1 cut(s) 133
AgsI TTSAA 4 cut(s) 160, 343, 395, 521
ApoI RAATTY 5 cut(s) 10, 283, 373, 436, 602
AseI ATTAAT 1 cut(s) 360
BceAI ACGGC 1 cut(s) 316
BfaI CTAG 1 cut(s) 317
BglII AGATCT 1 cut(s) 443
BmsI GCATC 2 cut(s) 39, 182
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse3DI GCAATG 2 cut(s) 42, 490
BseGI GGATG 1 cut(s) 98
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMI GCAATG 2 cut(s) 42, 490
BseMII CTCAG 1 cut(s) 132
BslI CCNNNNNNNGG 1 cut(s) 108
Bsp143I GATC 1 cut(s) 443
BspCNI CTCAG 1 cut(s) 131
BsrDI GCAATG 2 cut(s) 42, 490
BssMI GATC 1 cut(s) 443
Bst4CI ACNGT 1 cut(s) 313
BstC8I GCNNGC 1 cut(s) 481
BstDEI CTNAG 2 cut(s) 118, 534
BstF5I GGATG 1 cut(s) 98
BstKTI GATC 1 cut(s) 446
BstMBI GATC 1 cut(s) 443
BstNSI RCATGY 2 cut(s) 137, 460
BstX2I RGATCY 1 cut(s) 443
BstYI RGATCY 1 cut(s) 443
BtsCI GGATG 1 cut(s) 98
Cac8I GCNNGC 1 cut(s) 481
Csp6I GTAC 1 cut(s) 462
CviAII CATG 4 cut(s) 61, 134, 272, 457
CviJI RGCY 3 cut(s) 65, 125, 541
CviKI_1 RGCY 3 cut(s) 65, 125, 541
CviQI GTAC 1 cut(s) 462
DdeI CTNAG 2 cut(s) 118, 534
DpnI GATC 1 cut(s) 445
DpnII GATC 1 cut(s) 443
EcoRI GAATTC 1 cut(s) 373
EcoT22I ATGCAT 1 cut(s) 54
FaeI CATG 4 cut(s) 64, 137, 275, 460
FatI CATG 4 cut(s) 60, 133, 271, 456
FauNDI CATATG 3 cut(s) 166, 430, 596
FokI GGATG 1 cut(s) 85
FspBI CTAG 1 cut(s) 317
Hin1II CATG 4 cut(s) 64, 137, 275, 460
HinfI GANTC 5 cut(s) 116, 205, 268, 320, 395
Hpy166II GTNNAC 1 cut(s) 464
Hpy188I TCNGA 3 cut(s) 103, 121, 325
Hpy188III TCNNGA 4 cut(s) 15, 160, 188, 317
Hpy8I GTNNAC 1 cut(s) 464
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4V TGCA 4 cut(s) 35, 52, 281, 483
HpyF3I CTNAG 2 cut(s) 118, 534
Hsp92II CATG 4 cut(s) 64, 137, 275, 460
Kzo9I GATC 1 cut(s) 443
LweI GCATC 2 cut(s) 39, 182
MaeI CTAG 1 cut(s) 317
MaeIII GTNAC 1 cut(s) 85
MalI GATC 1 cut(s) 445
MboI GATC 1 cut(s) 443
MboII GAAGA 1 cut(s) 390
MflI RGATCY 1 cut(s) 443
MlyI GAGTC 2 cut(s) 110, 329
MmeI TCCRAC 2 cut(s) 348, 572
MnlI CCTC 3 cut(s) 115, 412, 617
Mph1103I ATGCAT 1 cut(s) 54
MseI TTAA 7 cut(s) 197, 237, 332, 360, 581, 606, 617
NdeI CATATG 3 cut(s) 166, 430, 596
NdeII GATC 1 cut(s) 443
NlaIII CATG 4 cut(s) 64, 137, 275, 460
NmuCI GTSAC 1 cut(s) 85
NsiI ATGCAT 1 cut(s) 54
NspI RCATGY 2 cut(s) 137, 460
PciI ACATGT 1 cut(s) 133
PfeI GAWTC 3 cut(s) 205, 268, 395
PleI GAGTC 2 cut(s) 110, 328
PpsI GAGTC 2 cut(s) 110, 328
PscI ACATGT 1 cut(s) 133
PshBI ATTAAT 1 cut(s) 360
PsiI TTATAA 1 cut(s) 495
PsuI RGATCY 1 cut(s) 443
RsaI GTAC 1 cut(s) 463
RsaNI GTAC 1 cut(s) 462
SaqAI TTAA 7 cut(s) 197, 237, 332, 360, 581, 606, 617
Sau3AI GATC 1 cut(s) 443
SchI GAGTC 2 cut(s) 110, 329
SfaNI GCATC 2 cut(s) 39, 182
SspMI CTAG 1 cut(s) 317
TaaI ACNGT 1 cut(s) 313
TaqI TCGA 1 cut(s) 114
TfiI GAWTC 3 cut(s) 205, 268, 395
Tru1I TTAA 7 cut(s) 197, 237, 332, 360, 581, 606, 617
Tru9I TTAA 7 cut(s) 197, 237, 332, 360, 581, 606, 617
TseFI GTSAC 1 cut(s) 85
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 1 cut(s) 183
VspI ATTAAT 1 cut(s) 360
XapI RAATTY 5 cut(s) 10, 283, 373, 436, 602
XbaI TCTAGA 1 cut(s) 316
XceI RCATGY 2 cut(s) 137, 460
XspI CTAG 1 cut(s) 317
Zsp2I ATGCAT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.