Prupe.7G039000_v2.0.a1

gag-polypeptide of LTR copia-type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000258
Physical Location & Seq
Forward (+)
7195169 .. 7195613
445 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G039000.1

Sequence Viewer

Length: 282 bp
ATGGAACAATTAGGAAGTAAGACCTCTTATGCTGAAAAGCCTGAGAAATTCAAAGGATCTAAGAAATTTGTTGTAGGTAGATTTCTGGATTTCAAGATGGTAGATTCCAAACCTGTTGTCAGACAAGTTGAAGACGTCCAGAAAATTATCCATGAGATTCTTGCTGAAGGCATGAAGATCAATGAATCTTTCCAGGTGGTGTCCTTGATTGAAAAACTTCCACCAAACTGGAAAGAATTCAAGAGTTATCTAAAGCACAAGAGAAAGAAGATGAGTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2

Protein Analysis

94

Amino Acids

10.91

Weight (kDa)

9.76

Isoelectric Point (pI)

41.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00980
fragaria_vesca FvH4_1g25682 FvH4_2g13961 FvH4_2g20162 FvH4_2g24753 FvH4_3g12191 FvH4_3g12632 FvH4_3g16171 FvH4_4g05871 FvH4_4g05873 FvH4_4g10121 FvH4_4g15488 FvH4_4g23911 FvH4_4g27782 FvH4_5g08912 FvH4_5g23001 FvH4_5g24552 FvH4_5g32801 FvH4_5g32802 FvH4_6g05093 FvH4_6g19722 FvH4_6g20391 FvH4_6g33792 FvH4_7g01381 FvH4_7g16761 FvH4_7g16761 FvH4_7g16761
malus_domestica MD01G1082500.v1.1 MD15G1436400.v1.1
prunus_persica Prupe.2G021400_v2.0.a1 Prupe.2G052400_v2.0.a1 Prupe.2G065000_v2.0.a1 Prupe.2G187700_v2.0.a1 Prupe.2G187800_v2.0.a1 Prupe.2G189900_v2.0.a1 Prupe.2G191300_v2.0.a1 Prupe.2G191700_v2.0.a1 Prupe.4G265600_v2.0.a1 Prupe.7G014200_v2.0.a1 Prupe.7G039000_v2.0.a1
pyrus_communis pycom01g05590 pycom01g05910 pycom02g12230 pycom02g25840 pycom03g15580 pycom04g04480 pycom05g09230 pycom05g23350 pycom05g23360 pycom07g08380 pycom09g01980 pycom09g01990 pycom11g18190 pycom11g18200 pycom11g21580 pycom13g04160 pycom15g25800 pycom16g16210 pycom16g17230 pycom16g24560 pycom16g25700 pycom17g11020
rosa_chinensis RchiOBHm_Chr1g0359981 RchiOBHm_Chr2g0151961 RchiOBHm_Chr2g0171331 RchiOBHm_Chr5g0081471 RchiOBHm_Chr6g0283031 RchiOBHm_Chr7g0197111 RchiOBHm_Chr7g0222601
rosa_laevigata RLG00000027843 RLG00000027845 RLG00000030065
rosa_multiflora Rmu_sc0000381.1_g000031 Rmu_sc0001179.1_g000035 Rmu_sc0001616.1_g000046 Rmu_sc0001851.1_g000032 Rmu_sc0002152.1_g000013 Rmu_sc0004031.1_g000015 Rmu_sc0004645.1_g000003 Rmu_sc0007393.1_g000001 Rmu_sc0008949.1_g000003 Rmu_sc0009799.1_g000011 Rmu_sc0011614.1_g000001 Rmu_sc0011699.1_g000009 Rmu_sc0019280.1_g000001 Rmu_sc0023984.1_g000001 Rmu_ssc0000050.1_g000036
rosa_roxburghii Rroxscaffold_1G00022650 Rroxscaffold_1G00033480 Rroxscaffold_3G00270250 Rroxscaffold_4G00296600 Rroxscaffold_4G00296760 Rroxscaffold_6G00409840
rosa_rugosa Rorug01G0273800 Rorug01G0273900 Rorug01G0274000
rosa_samantha Rh1AG287300 Rh1AG288100 Rh1BG253000 Rh1BG253500 Rh1BG399800 Rh1CG270400 Rh1CG271000 Rh1DG282000 Rh1DG282500 Rh4DG126500 Rh5DG194600 Rh5DG461100
rosa_wichuraiana Rw0G009130 Rw1G002590 Rw1G008490 Rw1G012210 Rw1G014290 Rw1G014490 Rw1G025510 Rw2G025840 Rw2G026170 Rw2G036510 Rw3G003050 Rw4G009270 Rw5G002350 Rw5G013930 Rw5G019500 Rw5G025890 Rw5G029960 Rw5G032360 Rw6G009890 Rw6G015670 Rw6G015860 Rw7G010030 Rw7G032600 Rw7G032770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 138
AclWI GGATC 1 cut(s) 64
AcsI RAATTY 3 cut(s) 47, 65, 236
AcuI CTGAAG 1 cut(s) 186
AcyI GRCGYC 1 cut(s) 135
AgsI TTSAA 5 cut(s) 52, 94, 131, 212, 241
AjnI CCWGG 1 cut(s) 192
AlwI GGATC 1 cut(s) 64
ApoI RAATTY 3 cut(s) 47, 65, 236
ArsI GACNNNNNNTTYG 2 cut(s) 102, 134
Asp700I GAANNNNTTC 2 cut(s) 216, 236
BbsI GAAGAC 1 cut(s) 138
BccI CCATC 1 cut(s) 91
BciT130I CCWGG 1 cut(s) 194
Bme1390I CCNGG 1 cut(s) 194
BmrFI CCNGG 1 cut(s) 194
BpiI GAAGAC 1 cut(s) 138
BsaHI GRCGYC 1 cut(s) 135
Bse1I ACTGG 1 cut(s) 233
BseBI CCWGG 1 cut(s) 194
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 1 cut(s) 233
Bsp143I GATC 2 cut(s) 56, 177
BspCNI CTCAG 1 cut(s) 34
BspPI GGATC 1 cut(s) 64
BsrI ACTGG 1 cut(s) 233
BssMI GATC 2 cut(s) 56, 177
BssNI GRCGYC 1 cut(s) 135
Bst2UI CCWGG 1 cut(s) 194
BstACI GRCGYC 1 cut(s) 135
BstDEI CTNAG 2 cut(s) 42, 60
BstKTI GATC 2 cut(s) 59, 180
BstMBI GATC 2 cut(s) 56, 177
BstNI CCWGG 1 cut(s) 194
BstSCI CCNGG 1 cut(s) 192
BstV2I GAAGAC 1 cut(s) 138
BstX2I RGATCY 1 cut(s) 56
BstXI CCANNNNNNTGG 1 cut(s) 228
BstYI RGATCY 1 cut(s) 56
CviAII CATG 2 cut(s) 152, 172
CviJI RGCY 1 cut(s) 40
CviKI_1 RGCY 1 cut(s) 40
DdeI CTNAG 2 cut(s) 42, 60
DpnI GATC 2 cut(s) 58, 179
DpnII GATC 2 cut(s) 56, 177
Eco57I CTGAAG 1 cut(s) 186
EcoRI GAATTC 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 192
FaeI CATG 2 cut(s) 155, 175
FaiI YATR 3 cut(s) 30, 153, 173
FatI CATG 2 cut(s) 151, 171
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 2 cut(s) 155, 175
HinfI GANTC 3 cut(s) 104, 157, 185
Hpy188I TCNGA 1 cut(s) 122
Hpy188III TCNNGA 4 cut(s) 86, 94, 139, 241
HpyAV CCTTC 1 cut(s) 161
HpyCH4IV ACGT 1 cut(s) 135
HpyF3I CTNAG 2 cut(s) 42, 60
HpySE526I ACGT 1 cut(s) 135
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 2 cut(s) 155, 175
Kzo9I GATC 2 cut(s) 56, 177
LpnPI CCDG 7 cut(s) 54, 71, 126, 152, 179, 206, 214
MaeII ACGT 1 cut(s) 135
MalI GATC 2 cut(s) 58, 179
MboI GATC 2 cut(s) 56, 177
MboII GAAGA 3 cut(s) 143, 187, 280
MflI RGATCY 1 cut(s) 56
MluCI AATT 5 cut(s) 8, 47, 65, 144, 236
MnlI CCTC 1 cut(s) 34
MroXI GAANNNNTTC 2 cut(s) 216, 236
MspR9I CCNGG 1 cut(s) 194
MvaI CCWGG 1 cut(s) 194
NdeII GATC 2 cut(s) 56, 177
NlaIII CATG 2 cut(s) 155, 175
PdmI GAANNNNTTC 2 cut(s) 216, 236
PfeI GAWTC 3 cut(s) 104, 157, 185
Psp6I CCWGG 1 cut(s) 192
PspGI CCWGG 1 cut(s) 192
PsuI RGATCY 1 cut(s) 56
Sau3AI GATC 2 cut(s) 56, 177
ScrFI CCNGG 1 cut(s) 194
SetI ASST 5 cut(s) 26, 79, 115, 138, 198
Sse9I AATT 5 cut(s) 8, 47, 65, 144, 236
StyD4I CCNGG 1 cut(s) 192
TaiI ACGT 1 cut(s) 138
TasI AATT 5 cut(s) 8, 47, 65, 144, 236
TfiI GAWTC 3 cut(s) 104, 157, 185
TspDTI ATGAA 2 cut(s) 188, 198
XapI RAATTY 3 cut(s) 47, 65, 236
XmnI GAANNNNTTC 2 cut(s) 216, 236
ZraI GACGTC 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.