Rroxscaffold_1G00022650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000258
Physical Location & Seq
Reverse (-)
28030733 .. 28035259
4527 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00022650.1

Sequence Viewer

Length: 177 bp
ATGGTTGAGGAGAAAACCGTGAGTGTGCAAATCCATGAGTTTAAAGACCTCTTAAGAAAAGTAGAGTCAAAGGGAACCAAGTTTACCAAAGAATTGAAAGTGTCTTGCCTCATAGATAAACTACCCCTAGTTGATCAAACTTTGCCAAAATTCTTAGGCACAAACAAGGAGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

58

Amino Acids

6.65

Weight (kDa)

8.82

Isoelectric Point (pI)

27.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00980
fragaria_vesca FvH4_1g25682 FvH4_2g13961 FvH4_2g20162 FvH4_2g24753 FvH4_3g12191 FvH4_3g12632 FvH4_3g16171 FvH4_4g05871 FvH4_4g05873 FvH4_4g10121 FvH4_4g15488 FvH4_4g23911 FvH4_4g27782 FvH4_5g08912 FvH4_5g23001 FvH4_5g24552 FvH4_5g32801 FvH4_5g32802 FvH4_6g05093 FvH4_6g19722 FvH4_6g20391 FvH4_6g33792 FvH4_7g01381 FvH4_7g16761 FvH4_7g16761 FvH4_7g16761
malus_domestica MD01G1082500.v1.1 MD15G1436400.v1.1
prunus_persica Prupe.2G021400_v2.0.a1 Prupe.2G052400_v2.0.a1 Prupe.2G065000_v2.0.a1 Prupe.2G187700_v2.0.a1 Prupe.2G187800_v2.0.a1 Prupe.2G189900_v2.0.a1 Prupe.2G191300_v2.0.a1 Prupe.2G191700_v2.0.a1 Prupe.4G265600_v2.0.a1 Prupe.7G014200_v2.0.a1 Prupe.7G039000_v2.0.a1
pyrus_communis pycom01g05590 pycom01g05910 pycom02g12230 pycom02g25840 pycom03g15580 pycom04g04480 pycom05g09230 pycom05g23350 pycom05g23360 pycom07g08380 pycom09g01980 pycom09g01990 pycom11g18190 pycom11g18200 pycom11g21580 pycom13g04160 pycom15g25800 pycom16g16210 pycom16g17230 pycom16g24560 pycom16g25700 pycom17g11020
rosa_chinensis RchiOBHm_Chr1g0359981 RchiOBHm_Chr2g0151961 RchiOBHm_Chr2g0171331 RchiOBHm_Chr5g0081471 RchiOBHm_Chr6g0283031 RchiOBHm_Chr7g0197111 RchiOBHm_Chr7g0222601
rosa_laevigata RLG00000027843 RLG00000027845 RLG00000030065
rosa_multiflora Rmu_sc0000381.1_g000031 Rmu_sc0001179.1_g000035 Rmu_sc0001616.1_g000046 Rmu_sc0001851.1_g000032 Rmu_sc0002152.1_g000013 Rmu_sc0004031.1_g000015 Rmu_sc0004645.1_g000003 Rmu_sc0007393.1_g000001 Rmu_sc0008949.1_g000003 Rmu_sc0009799.1_g000011 Rmu_sc0011614.1_g000001 Rmu_sc0011699.1_g000009 Rmu_sc0019280.1_g000001 Rmu_sc0023984.1_g000001 Rmu_ssc0000050.1_g000036
rosa_roxburghii Rroxscaffold_1G00022650 Rroxscaffold_1G00033480 Rroxscaffold_3G00270250 Rroxscaffold_4G00296600 Rroxscaffold_4G00296760 Rroxscaffold_6G00409840
rosa_rugosa Rorug01G0273800 Rorug01G0273900 Rorug01G0274000
rosa_samantha Rh1AG287300 Rh1AG288100 Rh1BG253000 Rh1BG253500 Rh1BG399800 Rh1CG270400 Rh1CG271000 Rh1DG282000 Rh1DG282500 Rh4DG126500 Rh5DG194600 Rh5DG461100
rosa_wichuraiana Rw0G009130 Rw1G002590 Rw1G008490 Rw1G012210 Rw1G014290 Rw1G014490 Rw1G025510 Rw2G025840 Rw2G026170 Rw2G036510 Rw3G003050 Rw4G009270 Rw5G002350 Rw5G013930 Rw5G019500 Rw5G025890 Rw5G029960 Rw5G032360 Rw6G009890 Rw6G015670 Rw6G015860 Rw7G010030 Rw7G032600 Rw7G032770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 149
AflII CTTAAG 1 cut(s) 52
AgsI TTSAA 1 cut(s) 97
ApoI RAATTY 1 cut(s) 149
BclI TGATCA 1 cut(s) 133
BfaI CTAG 1 cut(s) 128
BfrI CTTAAG 1 cut(s) 52
BmiI GGNNCC 1 cut(s) 76
BseRI GAGGAG 1 cut(s) 23
Bsp143I GATC 1 cut(s) 133
BspLI GGNNCC 1 cut(s) 76
BspTI CTTAAG 1 cut(s) 52
BssMI GATC 1 cut(s) 133
Bst4CI ACNGT 1 cut(s) 19
BstAFI CTTAAG 1 cut(s) 52
BstDEI CTNAG 1 cut(s) 154
BstKTI GATC 1 cut(s) 136
BstMBI GATC 1 cut(s) 133
CviAII CATG 1 cut(s) 35
DdeI CTNAG 1 cut(s) 154
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
DraI TTTAAA 1 cut(s) 43
FaeI CATG 1 cut(s) 38
FaiI YATR 2 cut(s) 36, 113
FatI CATG 1 cut(s) 34
FbaI TGATCA 1 cut(s) 133
FspBI CTAG 1 cut(s) 128
Hin1II CATG 1 cut(s) 38
HinfI GANTC 1 cut(s) 65
Hpy166II GTNNAC 1 cut(s) 84
Hpy8I GTNNAC 1 cut(s) 84
HpyCH4III ACNGT 1 cut(s) 19
HpyCH4V TGCA 1 cut(s) 28
HpyF3I CTNAG 1 cut(s) 154
Hsp92II CATG 1 cut(s) 38
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 1 cut(s) 133
MaeI CTAG 1 cut(s) 128
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MluCI AATT 2 cut(s) 92, 149
MlyI GAGTC 1 cut(s) 74
MnlI CCTC 2 cut(s) 59, 119
MseI TTAA 2 cut(s) 42, 53
MspCI CTTAAG 1 cut(s) 52
NdeII GATC 1 cut(s) 133
NlaIII CATG 1 cut(s) 38
NlaIV GGNNCC 1 cut(s) 76
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
PspN4I GGNNCC 1 cut(s) 76
PsrI GAACNNNNNNTAC 2 cut(s) 67, 99
SaqAI TTAA 2 cut(s) 42, 53
Sau3AI GATC 1 cut(s) 133
SchI GAGTC 1 cut(s) 74
SetI ASST 1 cut(s) 51
SgeI CNNG 5 cut(s) 31, 47, 91, 117, 140
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
Sse9I AATT 2 cut(s) 92, 149
SspMI CTAG 1 cut(s) 128
TaaI ACNGT 1 cut(s) 19
TasI AATT 2 cut(s) 92, 149
Tru1I TTAA 2 cut(s) 42, 53
Tru9I TTAA 2 cut(s) 42, 53
Vha464I CTTAAG 1 cut(s) 52
XapI RAATTY 1 cut(s) 149
XspI CTAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.