MD01G1082500.v1.1

gag-polypeptide of LTR copia-type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000258
Physical Location & Seq
Forward (+)
18893900 .. 18896910
3011 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1082500.v1.1.491

Sequence Viewer

Length: 1440 bp
ATGGATTCCGACACTCGACGGAAAATCGAAGAAACGGTTTTGTGTATACTGAAGAAAACGAATTTGGAGGAGATGACCGAGTTCAAAGTCCGAGAGATGACCTCGGAGCAACTCGGAATTGAGCTATCGGATACTGAGCACAAGAGCTTCGTGAGAAGCGTGATCGAAAGTTTTCTGCTGTCGGGCACGGAGCCCGAGGGGAACGCTGGGCAGGAGCCCATGGAGACGAATGTGCGAGAAGAGCAGGGCGCGAGGTTGAAGAAGGAGGCGAGTGAGGACGGAGGCCGTCTAATTTGTAAGCTGTCCAGCAGGAGAAGTGTGGTGATTAACGATTTCAAAGAGAAAACTTACGTGTCAATTAGAGATTTTTATCAAAAAGATGGAAAGCAAATTTGTACTCCCAGAGGAATTAGTTTGCCGGTCGAACAATGGGCAACGTTCAAAAAGAGCGTCCCTGCAATAGAGGAAGCCATTAAAAAGTTGGAGTCAAAGTTAAGATCTGAACTTGAGAGTAAACAAACTGAACATGGTAAGCAAGCTGAAGACACGTCTAATTCATTGAATGATATTGCTCCTCAAGAACTTGCTACCGTTGAGACTAGCCGTTATGATGGGAAAAACTACCCATTCTGGGCGCAACAGATGGAGCTTCTGTTGAAGCAATTAAAGGTTAAATACGTGCTATTTCAGCAACGCCCAAGCAGTATGCTTGGCCTGGAAGCAACTAGTGAAGAAATTGCTCATTCAAAGGCTGCTGAACAGAAATGGGTGAATGATGATTTAGTTTGTCGTCGCAGAATCTTAAATGCTCTATCTGATGATCTGTTTTATCTTTACTCAAAGAAAACTATGACTGCTAGAGAACTGTGGGAAGATCTAAAACATATGTATCTCTATGAGCAGTTTGGAACAGATAGAACTCTAGTTAAAAAGTACATCGAATTTGAGATGCTCGAAGGAAGACCAATTTTGGAGCAAGTTATGGAATTTAATAGAATTGCCGATTCCATTGTAAATTCTGGGATGACAATTGAGGAAAAATTTCATGTCAGTGTCATCATCTCCAAACTCCCCCCATCTTGGAAGGATGTGTACATTAAGTTGTTGCGCGAGGAGCATCTACAGTTTTCAATGCTAATGGATCGTTTGAAGGTTGAAGAAGAGTCACGTATTGGGGGTAACCAGACAGTATCGTTTAACCTGACGAGCGATCTGCCAGGGAAATCTGTACCGAGGCGAAGAGATATGAAGCCAAGAAGCATGCAATGGAAGAGGCAAGAAGTGGAGACAAATGGCAGAGTTATTTGCCATGCTTGTGGCAAGAAAGGGCACATCGCTCTGCATTGTCGTTATCGTAGCAGGAAGGATGACTGGGAAGCTAATGATAAGAAGCACGAGGGAAATGGATCTTTGCCTGCAAGTGGAGGTCAACATGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DEK_C PC4 Retrotran_gag_2

Protein Analysis

480

Amino Acids

55.37

Weight (kDa)

6.86

Isoelectric Point (pI)

54.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEK_C PF08766 5 - 59 3.1e-10 DEK C terminal domain
PC4 PF02229 99 - 149 4.6e-15 Transcriptional Coactivator p15 (PC4)
Retrotran_gag_2 PF14223 243 - 390 2.6e-20 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00980
fragaria_vesca FvH4_1g25682 FvH4_2g13961 FvH4_2g20162 FvH4_2g24753 FvH4_3g12191 FvH4_3g12632 FvH4_3g16171 FvH4_4g05871 FvH4_4g05873 FvH4_4g10121 FvH4_4g15488 FvH4_4g23911 FvH4_4g27782 FvH4_5g08912 FvH4_5g23001 FvH4_5g24552 FvH4_5g32801 FvH4_5g32802 FvH4_6g05093 FvH4_6g19722 FvH4_6g20391 FvH4_6g33792 FvH4_7g01381 FvH4_7g16761 FvH4_7g16761 FvH4_7g16761
malus_domestica MD01G1082500.v1.1 MD15G1436400.v1.1
prunus_persica Prupe.2G021400_v2.0.a1 Prupe.2G052400_v2.0.a1 Prupe.2G065000_v2.0.a1 Prupe.2G187700_v2.0.a1 Prupe.2G187800_v2.0.a1 Prupe.2G189900_v2.0.a1 Prupe.2G191300_v2.0.a1 Prupe.2G191700_v2.0.a1 Prupe.4G265600_v2.0.a1 Prupe.7G014200_v2.0.a1 Prupe.7G039000_v2.0.a1
pyrus_communis pycom01g05590 pycom01g05910 pycom02g12230 pycom02g25840 pycom03g15580 pycom04g04480 pycom05g09230 pycom05g23350 pycom05g23360 pycom07g08380 pycom09g01980 pycom09g01990 pycom11g18190 pycom11g18200 pycom11g21580 pycom13g04160 pycom15g25800 pycom16g16210 pycom16g17230 pycom16g24560 pycom16g25700 pycom17g11020
rosa_chinensis RchiOBHm_Chr1g0359981 RchiOBHm_Chr2g0151961 RchiOBHm_Chr2g0171331 RchiOBHm_Chr5g0081471 RchiOBHm_Chr6g0283031 RchiOBHm_Chr7g0197111 RchiOBHm_Chr7g0222601
rosa_laevigata RLG00000027843 RLG00000027845 RLG00000030065
rosa_multiflora Rmu_sc0000381.1_g000031 Rmu_sc0001179.1_g000035 Rmu_sc0001616.1_g000046 Rmu_sc0001851.1_g000032 Rmu_sc0002152.1_g000013 Rmu_sc0004031.1_g000015 Rmu_sc0004645.1_g000003 Rmu_sc0007393.1_g000001 Rmu_sc0008949.1_g000003 Rmu_sc0009799.1_g000011 Rmu_sc0011614.1_g000001 Rmu_sc0011699.1_g000009 Rmu_sc0019280.1_g000001 Rmu_sc0023984.1_g000001 Rmu_ssc0000050.1_g000036
rosa_roxburghii Rroxscaffold_1G00022650 Rroxscaffold_1G00033480 Rroxscaffold_3G00270250 Rroxscaffold_4G00296600 Rroxscaffold_4G00296760 Rroxscaffold_6G00409840
rosa_rugosa Rorug01G0273800 Rorug01G0273900 Rorug01G0274000
rosa_samantha Rh1AG287300 Rh1AG288100 Rh1BG253000 Rh1BG253500 Rh1BG399800 Rh1CG270400 Rh1CG271000 Rh1DG282000 Rh1DG282500 Rh4DG126500 Rh5DG194600 Rh5DG461100
rosa_wichuraiana Rw0G009130 Rw1G002590 Rw1G008490 Rw1G012210 Rw1G014290 Rw1G014490 Rw1G025510 Rw2G025840 Rw2G026170 Rw2G036510 Rw3G003050 Rw4G009270 Rw5G002350 Rw5G013930 Rw5G019500 Rw5G025890 Rw5G029960 Rw5G032360 Rw6G009890 Rw6G015670 Rw6G015860 Rw7G010030 Rw7G032600 Rw7G032770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 46
AccII CGCG 2 cut(s) 251, 1110
AclI AACGTT 1 cut(s) 437
AclWI GGATC 2 cut(s) 1149, 1414
AcsI RAATTY 6 cut(s) 61, 390, 941, 986, 1015, 1040
AcuI CTGAAG 2 cut(s) 71, 561
AfaI GTAC 4 cut(s) 397, 935, 1094, 1230
AfiI CCNNNNNNNGG 3 cut(s) 631, 1080, 1421
AflIII ACRYGT 3 cut(s) 351, 546, 1432
AhlI ACTAGT 1 cut(s) 725
AjiI CACGTC 1 cut(s) 549
AjnI CCWGG 2 cut(s) 714, 1216
AjuI GAANNNNNNNTTGG 2 cut(s) 47, 79
AluBI AGCT 6 cut(s) 124, 147, 301, 539, 649, 1379
AluI AGCT 6 cut(s) 124, 147, 301, 539, 649, 1379
Alw21I GWGCWC 1 cut(s) 141
Alw26I GTCTC 3 cut(s) 218, 590, 1280
AlwI GGATC 2 cut(s) 1149, 1414
Ama87I CYCGRG 1 cut(s) 194
AoxI GGCC 2 cut(s) 283, 712
ApeKI GCWGC 1 cut(s) 752
ApoI RAATTY 6 cut(s) 61, 390, 941, 986, 1015, 1040
ArsI GACNNNNNNTTYG 2 cut(s) 435, 467
Asp700I GAANNNNTTC 2 cut(s) 171, 1041
AspLEI GCGC 3 cut(s) 251, 637, 1110
AsuHPI GGTGA 2 cut(s) 334, 781
AvaI CYCGRG 1 cut(s) 194
BaeGI GKGCMC 2 cut(s) 188, 1332
BaeI ACNNNNGTAYC 2 cut(s) 872, 905
BanII GRGCYC 2 cut(s) 195, 219
BarI GAAGNNNNNNTAC 2 cut(s) 1076, 1108
BauI CACGAG 1 cut(s) 1394
BbsI GAAGAC 2 cut(s) 549, 967
Bbv12I GWGCWC 1 cut(s) 141
BbvI GCAGC 1 cut(s) 739
BccI CCATC 4 cut(s) 374, 605, 637, 1084
BceAI ACGGC 2 cut(s) 270, 588
BcgI CGANNNNNNTGC 2 cut(s) 1195, 1229
BciT130I CCWGG 2 cut(s) 716, 1218
BciVI GTATCC 1 cut(s) 124
BcoDI GTCTC 3 cut(s) 218, 590, 1280
BcuI ACTAGT 1 cut(s) 725
BfaI CTAG 4 cut(s) 600, 726, 858, 923
BfmI CTRYAG 1 cut(s) 1121
BfuI GTATCC 1 cut(s) 124
BglII AGATCT 2 cut(s) 497, 874
BisI GCNGC 1 cut(s) 753
BlsI GCNGC 1 cut(s) 754
Bme1390I CCNGG 2 cut(s) 716, 1218
BmeT110I CYCGRG 1 cut(s) 194
BmgBI CACGTC 1 cut(s) 549
BmiI GGNNCC 2 cut(s) 192, 216
BmrFI CCNGG 2 cut(s) 716, 1218
BmrI ACTGGG 1 cut(s) 1381
BmsI GCATC 2 cut(s) 939, 1126
BmuI ACTGGG 1 cut(s) 1381
BpiI GAAGAC 2 cut(s) 549, 967
BplI GAGNNNNNCTC 2 cut(s) 86, 118
BpuEI CTTGAG 2 cut(s) 527, 561
BsaAI YACGTR 3 cut(s) 352, 679, 1169
BsaBI GATNNNNATC 1 cut(s) 369
BsaJI CCNNGG 5 cut(s) 102, 195, 219, 1217, 1232
BsaXI ACNNNNNCTCC 4 cut(s) 476, 506, 638, 668
Bsc4I CCNNNNNNNGG 3 cut(s) 631, 1080, 1421
Bse118I RCCGGY 1 cut(s) 418
Bse1I ACTGG 1 cut(s) 1376
Bse3DI GCAATG 1 cut(s) 1271
Bse8I GATNNNNATC 1 cut(s) 369
BseBI CCWGG 2 cut(s) 716, 1218
BseDI CCNNGG 5 cut(s) 102, 195, 219, 1217, 1232
BseGI GGATG 3 cut(s) 1029, 1093, 1372
BseJI GATNNNNATC 1 cut(s) 369
BseLI CCNNNNNNNGG 3 cut(s) 631, 1080, 1421
BseMI GCAATG 1 cut(s) 1271
BseMII CTCAG 1 cut(s) 126
BseNI ACTGG 1 cut(s) 1376
BseRI GAGGAG 3 cut(s) 83, 564, 1127
BseSI GKGCMC 2 cut(s) 188, 1332
BseXI GCAGC 1 cut(s) 739
BseYI CCCAGC 1 cut(s) 206
Bsh1236I CGCG 2 cut(s) 251, 1110
Bsh1285I CGRYCG 1 cut(s) 423
BshFI GGCC 2 cut(s) 285, 714
BsiEI CGRYCG 1 cut(s) 423
BsiHKAI GWGCWC 1 cut(s) 141
BsiHKCI CYCGRG 1 cut(s) 194
BsiSI CCGG 1 cut(s) 419
BslFI GGGAC 1 cut(s) 437
BslI CCNNNNNNNGG 3 cut(s) 631, 1080, 1421
BsmAI GTCTC 3 cut(s) 218, 590, 1280
BsmBI CGTCTC 1 cut(s) 218
BsmFI GGGAC 1 cut(s) 437
BsnI GGCC 2 cut(s) 285, 714
BsoBI CYCGRG 1 cut(s) 194
Bsp1286I GDGCHC 5 cut(s) 141, 188, 195, 219, 1332
Bsp1407I TGTACA 1 cut(s) 1092
Bsp143I GATC 7 cut(s) 162, 497, 820, 874, 1141, 1210, 1406
Bsp19I CCATGG 1 cut(s) 219
BspANI GGCC 2 cut(s) 285, 714
BspCNI CTCAG 1 cut(s) 127
BspFNI CGCG 2 cut(s) 251, 1110
BspLI GGNNCC 2 cut(s) 192, 216
BspPI GGATC 2 cut(s) 1149, 1414
BspQI GCTCTTC 1 cut(s) 234
BsrDI GCAATG 1 cut(s) 1271
BsrFI RCCGGY 1 cut(s) 418
BsrGI TGTACA 1 cut(s) 1092
BsrI ACTGG 1 cut(s) 1376
BssAI RCCGGY 1 cut(s) 418
BssECI CCNNGG 5 cut(s) 102, 195, 219, 1217, 1232
BssMI GATC 7 cut(s) 162, 497, 820, 874, 1141, 1210, 1406
BssNAI GTATAC 1 cut(s) 47
BssSI CACGAG 1 cut(s) 1394
BssT1I CCWWGG 1 cut(s) 219
Bst1107I GTATAC 1 cut(s) 47
Bst2BI CACGAG 1 cut(s) 1394
Bst2UI CCWGG 2 cut(s) 716, 1218
Bst4CI ACNGT 5 cut(s) 37, 592, 867, 1125, 1189
Bst6I CTCTTC 4 cut(s) 234, 1155, 1234, 1265
BstAUI TGTACA 1 cut(s) 1092
BstBAI YACGTR 3 cut(s) 352, 679, 1169
BstC8I GCNNGC 3 cut(s) 537, 1262, 1416
BstDEI CTNAG 1 cut(s) 135
BstDSI CCRYGG 1 cut(s) 219
BstEII GGTNACC 1 cut(s) 1178
BstF5I GGATG 3 cut(s) 1029, 1093, 1372
BstFNI CGCG 2 cut(s) 251, 1110
BstHHI GCGC 3 cut(s) 251, 637, 1110
BstKTI GATC 7 cut(s) 165, 500, 823, 877, 1144, 1213, 1409
BstMAI GTCTC 3 cut(s) 218, 590, 1280
BstMBI GATC 7 cut(s) 162, 497, 820, 874, 1141, 1210, 1406
BstMCI CGRYCG 1 cut(s) 423
BstMWI GCNNNNNNNGC 3 cut(s) 241, 688, 1114
BstNI CCWGG 2 cut(s) 716, 1218
BstNSI RCATGY 2 cut(s) 1264, 1436
BstPI GGTNACC 1 cut(s) 1178
BstSCI CCNGG 2 cut(s) 714, 1216
BstSFI CTRYAG 1 cut(s) 1121
BstSLI GKGCMC 2 cut(s) 188, 1332
BstUI CGCG 2 cut(s) 251, 1110
BstV1I GCAGC 1 cut(s) 739
BstV2I GAAGAC 2 cut(s) 549, 967
BstX2I RGATCY 3 cut(s) 497, 874, 1406
BstXI CCANNNNNNTGG 1 cut(s) 1316
BstYI RGATCY 3 cut(s) 497, 874, 1406
BstZ17I GTATAC 1 cut(s) 47
BsuI GTATCC 1 cut(s) 124
BsuRI GGCC 2 cut(s) 285, 714
BtgI CCRYGG 1 cut(s) 219
BtgZI GCGATG 1 cut(s) 1318
BtrI CACGTC 1 cut(s) 549
BtsCI GGATG 3 cut(s) 1029, 1093, 1372
BtsIMutI CAGTG 1 cut(s) 1057
Cac8I GCNNGC 3 cut(s) 537, 1262, 1416
CfoI GCGC 3 cut(s) 251, 637, 1110
Cfr10I RCCGGY 1 cut(s) 418
CseI GACGC 1 cut(s) 439
Csp6I GTAC 4 cut(s) 396, 934, 1093, 1229
CviAII CATG 6 cut(s) 220, 527, 1046, 1261, 1310, 1433
CviQI GTAC 4 cut(s) 396, 934, 1093, 1229
DdeI CTNAG 1 cut(s) 135
DpnI GATC 7 cut(s) 164, 499, 822, 876, 1143, 1212, 1408
DpnII GATC 7 cut(s) 162, 497, 820, 874, 1141, 1210, 1406
Eam1104I CTCTTC 4 cut(s) 234, 1155, 1234, 1265
EarI CTCTTC 4 cut(s) 234, 1155, 1234, 1265
Eco130I CCWWGG 1 cut(s) 219
Eco24I GRGCYC 2 cut(s) 195, 219
Eco57I CTGAAG 2 cut(s) 71, 561
Eco88I CYCGRG 1 cut(s) 194
Eco91I GGTNACC 1 cut(s) 1178
EcoO65I GGTNACC 1 cut(s) 1178
EcoRII CCWGG 2 cut(s) 714, 1216
EcoT14I CCWWGG 1 cut(s) 219
EcoT38I GRGCYC 2 cut(s) 195, 219
ErhI CCWWGG 1 cut(s) 219
Esp3I CGTCTC 1 cut(s) 218
FaeI CATG 6 cut(s) 223, 530, 1049, 1264, 1313, 1436
FaqI GGGAC 1 cut(s) 437
FatI CATG 6 cut(s) 219, 526, 1045, 1260, 1309, 1432
FauNDI CATATG 1 cut(s) 885
FblI GTMKAC 1 cut(s) 46
Fnu4HI GCNGC 1 cut(s) 753
FokI GGATG 3 cut(s) 1036, 1100, 1379
FriOI GRGCYC 2 cut(s) 195, 219
Fsp4HI GCNGC 1 cut(s) 753
FspBI CTAG 4 cut(s) 600, 726, 858, 923
GlaI GCGC 3 cut(s) 250, 636, 1109
GluI GCNGC 1 cut(s) 753
GsaI CCCAGC 1 cut(s) 210
HaeIII GGCC 2 cut(s) 285, 714
HapII CCGG 1 cut(s) 419
HgaI GACGC 1 cut(s) 439
HhaI GCGC 3 cut(s) 251, 637, 1110
Hin1II CATG 6 cut(s) 223, 530, 1049, 1264, 1313, 1436
Hin6I GCGC 3 cut(s) 249, 635, 1108
HinP1I GCGC 3 cut(s) 249, 635, 1108
HincII GTYRAC 1 cut(s) 1430
HindII GTYRAC 1 cut(s) 1430
HinfI GANTC 5 cut(s) 5, 485, 798, 1004, 1163
HpaII CCGG 1 cut(s) 419
HphI GGTGA 2 cut(s) 334, 781
Hpy166II GTNNAC 4 cut(s) 47, 515, 1093, 1430
Hpy188I TCNGA 8 cut(s) 10, 92, 106, 116, 130, 502, 817, 1439
Hpy188III TCNNGA 2 cut(s) 151, 578
Hpy8I GTNNAC 4 cut(s) 47, 515, 1093, 1430
Hpy99I CGWCG 2 cut(s) 21, 795
HpyAV CCTTC 5 cut(s) 256, 950, 1078, 1144, 1357
HpyCH4III ACNGT 5 cut(s) 37, 592, 867, 1125, 1189
HpyCH4IV ACGT 5 cut(s) 351, 437, 548, 678, 1168
HpyCH4V TGCA 4 cut(s) 458, 1264, 1342, 1418
HpyF10VI GCNNNNNNNGC 3 cut(s) 241, 688, 1114
HpyF3I CTNAG 1 cut(s) 135
HpySE526I ACGT 5 cut(s) 351, 437, 548, 678, 1168
Hsp92II CATG 6 cut(s) 223, 530, 1049, 1264, 1313, 1436
HspAI GCGC 3 cut(s) 249, 635, 1108
Kzo9I GATC 7 cut(s) 162, 497, 820, 874, 1141, 1210, 1406
LguI GCTCTTC 1 cut(s) 234
LmnI GCTCC 7 cut(s) 106, 190, 214, 577, 646, 973, 1114
Lsp1109I GCAGC 1 cut(s) 739
LweI GCATC 2 cut(s) 939, 1126
MaeI CTAG 4 cut(s) 600, 726, 858, 923
MaeII ACGT 5 cut(s) 351, 437, 548, 678, 1168
MaeIII GTNAC 2 cut(s) 1164, 1178
MalI GATC 7 cut(s) 164, 499, 822, 876, 1143, 1212, 1408
MboI GATC 7 cut(s) 162, 497, 820, 874, 1141, 1210, 1406
MfeI CAATTG 1 cut(s) 1029
MflI RGATCY 3 cut(s) 497, 874, 1406
MhlI GDGCHC 5 cut(s) 141, 188, 195, 219, 1332
MlyI GAGTC 2 cut(s) 494, 1172
MmeI TCCRAC 2 cut(s) 33, 462
MroXI GAANNNNTTC 2 cut(s) 171, 1041
MslI CAYNNNNRTG 2 cut(s) 1050, 1314
MspI CCGG 1 cut(s) 419
MspR9I CCNGG 2 cut(s) 716, 1218
MunI CAATTG 1 cut(s) 1029
MvaI CCWGG 2 cut(s) 716, 1218
MvnI CGCG 2 cut(s) 251, 1110
MwoI GCNNNNNNNGC 3 cut(s) 241, 688, 1114
NcoI CCATGG 1 cut(s) 219
NdeI CATATG 1 cut(s) 885
NdeII GATC 7 cut(s) 162, 497, 820, 874, 1141, 1210, 1406
NlaIII CATG 6 cut(s) 223, 530, 1049, 1264, 1313, 1436
NlaIV GGNNCC 2 cut(s) 192, 216
NmuCI GTSAC 1 cut(s) 1164
NspI RCATGY 2 cut(s) 1264, 1436
PaeI GCATGC 1 cut(s) 1264
PciI ACATGT 1 cut(s) 1432
PciSI GCTCTTC 1 cut(s) 234
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PdmI GAANNNNTTC 2 cut(s) 171, 1041
PfeI GAWTC 3 cut(s) 5, 798, 1004
PkrI GCNGC 1 cut(s) 754
PleI GAGTC 2 cut(s) 493, 1171
PpsI GAGTC 2 cut(s) 493, 1171
Ppu21I YACGTR 3 cut(s) 352, 679, 1169
PscI ACATGT 1 cut(s) 1432
Psp1406I AACGTT 1 cut(s) 437
Psp6I CCWGG 2 cut(s) 714, 1216
PspEI GGTNACC 1 cut(s) 1178
PspFI CCCAGC 1 cut(s) 206
PspGI CCWGG 2 cut(s) 714, 1216
PspN4I GGNNCC 2 cut(s) 192, 216
PsuI RGATCY 3 cut(s) 497, 874, 1406
RsaI GTAC 4 cut(s) 397, 935, 1094, 1230
RsaNI GTAC 4 cut(s) 396, 934, 1093, 1229
RseI CAYNNNNRTG 2 cut(s) 1050, 1314
SapI GCTCTTC 1 cut(s) 234
SatI GCNGC 1 cut(s) 753
Sau3AI GATC 7 cut(s) 162, 497, 820, 874, 1141, 1210, 1406
SchI GAGTC 2 cut(s) 494, 1172
ScrFI CCNGG 2 cut(s) 716, 1218
SduI GDGCHC 5 cut(s) 141, 188, 195, 219, 1332
SfaNI GCATC 2 cut(s) 939, 1126
SfcI CTRYAG 1 cut(s) 1121
SmiMI CAYNNNNRTG 2 cut(s) 1050, 1314
SmlI CTYRAG 2 cut(s) 506, 576
SmoI CTYRAG 2 cut(s) 506, 576
SpeI ACTAGT 1 cut(s) 725
SphI GCATGC 1 cut(s) 1264
SspMI CTAG 4 cut(s) 600, 726, 858, 923
StyD4I CCNGG 2 cut(s) 714, 1216
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 5 cut(s) 37, 592, 867, 1125, 1189
TaiI ACGT 5 cut(s) 354, 440, 551, 681, 1171
TaqI TCGA 6 cut(s) 16, 27, 165, 423, 939, 954
TaqII GACCGA 1 cut(s) 92
TatI WGTACW 3 cut(s) 395, 933, 1092
TfiI GAWTC 3 cut(s) 5, 798, 1004
TscAI CASTG 1 cut(s) 1057
TseFI GTSAC 1 cut(s) 1164
TseI GCWGC 1 cut(s) 752
Tsp45I GTSAC 1 cut(s) 1164
TspDTI ATGAA 3 cut(s) 546, 1034, 1262
TspGWI ACGGA 3 cut(s) 34, 203, 294
TspRI CASTG 1 cut(s) 1057
XapI RAATTY 6 cut(s) 61, 390, 941, 986, 1015, 1040
XceI RCATGY 2 cut(s) 1264, 1436
XcmI CCANNNNNNNNNTGG 1 cut(s) 478
XmiI GTMKAC 1 cut(s) 46
XmnI GAANNNNTTC 2 cut(s) 171, 1041
XspI CTAG 4 cut(s) 600, 726, 858, 923
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.