Rroxscaffold_4G00296600

Transcriptional Coactivator p15 (PC4)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000258
Physical Location & Seq
Reverse (-)
16642544 .. 16645051
2508 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00296600.1

Sequence Viewer

Length: 1632 bp
ATGGAGCCGGAGAGTCGCCGGAGAATCGAGGAAACGGTGGTGGACATACTGAGGACGACGAGCTTGGATGAGATGACTGAGTTCAAAGTCCGAGTCGCCGCCTCGGAGCGACTCGGAATCGATCTCTCCGGCGTGGACCGCAAGAGCTTCGTCCGCGGCGTCGTCGAGAGTTTCCTGATTTCAGCCGCGGCGGAGTCGGAGCCGCCGAGCGTTGGGGAAGAGCAGGAGGCGCCGAGGTTGAAGAAGGAGGCGAATGAGGACGGAGAGCGTGTTATTTGTAAGCTGACGAACAGGAGAAACGTGGTGGTTCATGATTTCAGAGGGAAAACATTGGTTTCGATTAGGGAATTCTATAAGAAAGGTGGAAAGGAGCTTCCTAGTGCCAGAGGAATTAGCTTGCCAGCTGAACAATGGACAACCTTCAAAAATAGTGTCCCTGCAATAGAGGAAGCAATTAAAAAGATGGAATCGAAGTTAAGATCTGAAATTGATAGCAAACAAACTGAAGACGGTAAAGAAACTAAAGATGGCAAACAAACTGAAGACGGTAAAGAAACTGAAGACAGTAAACAAGTTGAAGATGGCAAACGAACTGAAGGTAGCAAACGAACTGAAGATGGTAAACAAGCTGAAGATGGCAAACAATCTGAAGCTAGCAAACGAATTGTAGATGGCGAACAAAATGGAGATGGTAAACAAACTGAAGATGCTAGACAAAGTGAAGACATGTCTGCTTCATTGAATGGTGTTGCTCCTCGTGAATTTTTCTCTATTGAAACTTGCCGTTTTAATGGGAAGAACTACCCTATCTGGGCACAACAGATGGAGTTTCTGCTAAAGCAATTGAAAATTGCATATGTGCTTTTTGTTTCATGCCCAGTCATTACACTAGGGCCGGAACCAAGTACTGAAGAAATTGCTCAAGCAAAGGCTGCTGAACAGCAATGGAGGAATGATGACTCTGTGTGCCGTCGCAGCATCTTGAATGCTCTATCTGATGATCTGTTAAATCTTTACTCAAGGAGAACTACGACTGCAAAAGAACTGTGGGAAGATCTAAAACAATTGCATCTCTATGAGAAATTTGGAACAAAGAGATCTCTGGTTAAAAAGTATATGGAATTTCAGATGCTTGAAGGAAGACCAGTTTTGGAGCAGATTCAAGAATTTAATGACATTGCCGATTCCATTGTCGCTTCTGGAATGGTGGTCGAGGAGAAATTTCATGTCAGTGCTGTTATCTCCAAGCTTCCCCCATCTTGGAAAGATGTGAGTATCAAGTTGATGTCTGAGGAGCATTTACCTTTTGCAAATATGATGGCTCGTTTGAGGTTTGAAGAAGACTTGCGAACCAGGGAGCAGCAGGGGTTACCCATTAATCATGCTGGCAATCCACCAGTGAAACCCATACCAAGGATGAGAGATATGAAGCAGCGAAATATGCAATGGAAGAGGTCAGACCTGGAGATTGATGGTAGAGTTATTTGCCAATTTTGTGGCAAGAAGGGGCACATCTCTCAGAACTGTCGTTATAATAATAAGAGGAAGTCTACCAAGGATGTTAACGATGAGAGTCAGGACGGATCTATGCCTATGGAGGTTAACATGCTGGAGGAGACTGTGGATGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DEK_C PC4 Retrotran_gag_2 zf-CCHC

Protein Analysis

543

Amino Acids

61.83

Weight (kDa)

5.62

Isoelectric Point (pI)

62.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEK_C PF08766 5 - 59 1.1e-11 DEK C terminal domain
PC4 PF02229 93 - 143 2.2e-17 Transcriptional Coactivator p15 (PC4)
Retrotran_gag_2 PF14223 302 - 452 2.3e-21 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00980
fragaria_vesca FvH4_1g25682 FvH4_2g13961 FvH4_2g20162 FvH4_2g24753 FvH4_3g12191 FvH4_3g12632 FvH4_3g16171 FvH4_4g05871 FvH4_4g05873 FvH4_4g10121 FvH4_4g15488 FvH4_4g23911 FvH4_4g27782 FvH4_5g08912 FvH4_5g23001 FvH4_5g24552 FvH4_5g32801 FvH4_5g32802 FvH4_6g05093 FvH4_6g19722 FvH4_6g20391 FvH4_6g33792 FvH4_7g01381 FvH4_7g16761 FvH4_7g16761 FvH4_7g16761
malus_domestica MD01G1082500.v1.1 MD15G1436400.v1.1
prunus_persica Prupe.2G021400_v2.0.a1 Prupe.2G052400_v2.0.a1 Prupe.2G065000_v2.0.a1 Prupe.2G187700_v2.0.a1 Prupe.2G187800_v2.0.a1 Prupe.2G189900_v2.0.a1 Prupe.2G191300_v2.0.a1 Prupe.2G191700_v2.0.a1 Prupe.4G265600_v2.0.a1 Prupe.7G014200_v2.0.a1 Prupe.7G039000_v2.0.a1
pyrus_communis pycom01g05590 pycom01g05910 pycom02g12230 pycom02g25840 pycom03g15580 pycom04g04480 pycom05g09230 pycom05g23350 pycom05g23360 pycom07g08380 pycom09g01980 pycom09g01990 pycom11g18190 pycom11g18200 pycom11g21580 pycom13g04160 pycom15g25800 pycom16g16210 pycom16g17230 pycom16g24560 pycom16g25700 pycom17g11020
rosa_chinensis RchiOBHm_Chr1g0359981 RchiOBHm_Chr2g0151961 RchiOBHm_Chr2g0171331 RchiOBHm_Chr5g0081471 RchiOBHm_Chr6g0283031 RchiOBHm_Chr7g0197111 RchiOBHm_Chr7g0222601
rosa_laevigata RLG00000027843 RLG00000027845 RLG00000030065
rosa_multiflora Rmu_sc0000381.1_g000031 Rmu_sc0001179.1_g000035 Rmu_sc0001616.1_g000046 Rmu_sc0001851.1_g000032 Rmu_sc0002152.1_g000013 Rmu_sc0004031.1_g000015 Rmu_sc0004645.1_g000003 Rmu_sc0007393.1_g000001 Rmu_sc0008949.1_g000003 Rmu_sc0009799.1_g000011 Rmu_sc0011614.1_g000001 Rmu_sc0011699.1_g000009 Rmu_sc0019280.1_g000001 Rmu_sc0023984.1_g000001 Rmu_ssc0000050.1_g000036
rosa_roxburghii Rroxscaffold_1G00022650 Rroxscaffold_1G00033480 Rroxscaffold_3G00270250 Rroxscaffold_4G00296600 Rroxscaffold_4G00296760 Rroxscaffold_6G00409840
rosa_rugosa Rorug01G0273800 Rorug01G0273900 Rorug01G0274000
rosa_samantha Rh1AG287300 Rh1AG288100 Rh1BG253000 Rh1BG253500 Rh1BG399800 Rh1CG270400 Rh1CG271000 Rh1DG282000 Rh1DG282500 Rh4DG126500 Rh5DG194600 Rh5DG461100
rosa_wichuraiana Rw0G009130 Rw1G002590 Rw1G008490 Rw1G012210 Rw1G014290 Rw1G014490 Rw1G025510 Rw2G025840 Rw2G026170 Rw2G036510 Rw3G003050 Rw4G009270 Rw5G002350 Rw5G013930 Rw5G019500 Rw5G025890 Rw5G029960 Rw5G032360 Rw6G009890 Rw6G015670 Rw6G015860 Rw7G010030 Rw7G032600 Rw7G032770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1533
AccB1I GGYRCC 1 cut(s) 229
AccI GTMKAC 1 cut(s) 1550
AccII CGCG 2 cut(s) 156, 188
AciI CCGC 8 cut(s) 99, 139, 154, 156, 186, 188, 191, 203
AclWI GGATC 1 cut(s) 1591
AcsI RAATTY 6 cut(s) 347, 761, 1082, 1121, 1166, 1220
AcuI CTGAAG 9 cut(s) 525, 561, 579, 615, 633, 651, 669, 723, 930
AcyI GRCGYC 2 cut(s) 159, 230
AfaI GTAC 1 cut(s) 907
AfiI CCNNNNNNNGG 4 cut(s) 212, 811, 1260, 1413
AflIII ACRYGT 1 cut(s) 726
AjnI CCWGG 2 cut(s) 1352, 1461
AluBI AGCT 9 cut(s) 63, 147, 283, 373, 396, 404, 629, 653, 1249
AluI AGCT 9 cut(s) 63, 147, 283, 373, 396, 404, 629, 653, 1249
Alw26I GTCTC 1 cut(s) 1610
AlwI GGATC 1 cut(s) 1591
AoxI GGCC 1 cut(s) 893
ApeKI GCWGC 4 cut(s) 932, 975, 1360, 1432
ApoI RAATTY 6 cut(s) 347, 761, 1082, 1121, 1166, 1220
ArsI GACNNNNNNTTYG 4 cut(s) 78, 110, 417, 449
AseI ATTAAT 1 cut(s) 1377
AspLEI GCGC 1 cut(s) 232
AspS9I GGNCC 2 cut(s) 136, 893
AsuNHI GCTAGC 1 cut(s) 653
AvaII GGWCC 1 cut(s) 136
BaeGI GKGCMC 2 cut(s) 817, 1512
BanI GGYRCC 1 cut(s) 229
BauI CACGAG 1 cut(s) 756
BbsI GAAGAC 6 cut(s) 513, 549, 567, 729, 1147, 1347
BbvI GCAGC 4 cut(s) 919, 987, 1372, 1444
BceAI ACGGC 2 cut(s) 768, 954
BcgI CGANNNNNNTGC 2 cut(s) 130, 164
BciT130I CCWGG 2 cut(s) 1354, 1463
BcoDI GTCTC 1 cut(s) 1610
BfaI CTAG 4 cut(s) 378, 654, 711, 890
BfoI RGCGCY 1 cut(s) 233
BglII AGATCT 3 cut(s) 479, 1054, 1097
BisI GCNGC 9 cut(s) 99, 157, 186, 189, 203, 933, 976, 1361, 1433
BlsI GCNGC 9 cut(s) 100, 158, 187, 190, 204, 934, 977, 1362, 1434
BmcAI AGTACT 1 cut(s) 907
Bme1390I CCNGG 2 cut(s) 1354, 1463
Bme18I GGWCC 1 cut(s) 136
BmgT120I GGNCC 2 cut(s) 136, 893
BmiI GGNNCC 4 cut(s) 6, 201, 231, 900
BmrFI CCNGG 2 cut(s) 1354, 1463
BmrI ACTGGG 1 cut(s) 872
BmsI GCATC 4 cut(s) 697, 987, 1078, 1119
BmtI GCTAGC 1 cut(s) 657
BmuI ACTGGG 1 cut(s) 872
BpiI GAAGAC 6 cut(s) 513, 549, 567, 729, 1147, 1347
BpmI CTGGAG 2 cut(s) 1484, 1631
BpuEI CTTGAG 2 cut(s) 906, 1003
Bsa29I ATCGAT 1 cut(s) 120
BsaHI GRCGYC 2 cut(s) 159, 230
BsaJI CCNNGG 7 cut(s) 102, 154, 186, 233, 1353, 1412, 1554
BsaXI ACNNNNNCTCC 2 cut(s) 255, 285
Bsc4I CCNNNNNNNGG 4 cut(s) 212, 811, 1260, 1413
Bse1I ACTGG 3 cut(s) 878, 1145, 1397
Bse3DI GCAATG 3 cut(s) 950, 1176, 1451
BseBI CCWGG 2 cut(s) 1354, 1463
BseCI ATCGAT 1 cut(s) 120
BseDI CCNNGG 7 cut(s) 102, 154, 186, 233, 1353, 1412, 1554
BseGI GGATG 4 cut(s) 73, 1422, 1564, 1630
BseLI CCNNNNNNNGG 4 cut(s) 212, 811, 1260, 1413
BseMI GCAATG 3 cut(s) 950, 1176, 1451
BseMII CTCAG 4 cut(s) 41, 69, 1281, 1532
BseNI ACTGG 3 cut(s) 878, 1145, 1397
BseRI GAGGAG 4 cut(s) 744, 1229, 1307, 1628
BseSI GKGCMC 2 cut(s) 817, 1512
BseXI GCAGC 4 cut(s) 919, 987, 1372, 1444
Bsh1236I CGCG 2 cut(s) 156, 188
BshFI GGCC 1 cut(s) 895
BshNI GGYRCC 1 cut(s) 229
BshVI ATCGAT 1 cut(s) 120
BsiSI CCGG 4 cut(s) 8, 19, 129, 896
BslFI GGGAC 1 cut(s) 419
BslI CCNNNNNNNGG 4 cut(s) 212, 811, 1260, 1413
BsmAI GTCTC 1 cut(s) 1610
BsmFI GGGAC 1 cut(s) 419
BsmI GAATGC 1 cut(s) 991
BsnI GGCC 1 cut(s) 895
Bsp1286I GDGCHC 2 cut(s) 817, 1512
Bsp143I GATC 6 cut(s) 121, 479, 1000, 1054, 1097, 1583
BspACI CCGC 8 cut(s) 99, 139, 154, 156, 186, 188, 191, 203
BspANI GGCC 1 cut(s) 895
BspCNI CTCAG 4 cut(s) 42, 70, 1282, 1531
BspDI ATCGAT 1 cut(s) 120
BspFNI CGCG 2 cut(s) 156, 188
BspHI TCATGA 1 cut(s) 310
BspLI GGNNCC 4 cut(s) 6, 201, 231, 900
BspOI GCTAGC 1 cut(s) 657
BspPI GGATC 1 cut(s) 1591
BspQI GCTCTTC 1 cut(s) 213
BspT107I GGYRCC 1 cut(s) 229
BsrDI GCAATG 3 cut(s) 950, 1176, 1451
BsrI ACTGG 3 cut(s) 878, 1145, 1397
BssECI CCNNGG 7 cut(s) 102, 154, 186, 233, 1353, 1412, 1554
BssMI GATC 6 cut(s) 121, 479, 1000, 1054, 1097, 1583
BssNI GRCGYC 2 cut(s) 159, 230
BssSI CACGAG 1 cut(s) 756
BssT1I CCWWGG 2 cut(s) 1412, 1554
Bst2BI CACGAG 1 cut(s) 756
Bst2UI CCWGG 2 cut(s) 1354, 1463
Bst4CI ACNGT 7 cut(s) 37, 512, 548, 566, 1047, 1526, 1621
Bst6I CTCTTC 2 cut(s) 213, 1445
BstACI GRCGYC 2 cut(s) 159, 230
BstAPI GCANNNNNTGC 1 cut(s) 932
BstC8I GCNNGC 4 cut(s) 398, 402, 655, 1387
BstDEI CTNAG 4 cut(s) 50, 78, 1290, 1518
BstDSI CCRYGG 2 cut(s) 154, 186
BstEII GGTNACC 1 cut(s) 1368
BstF5I GGATG 4 cut(s) 73, 1422, 1564, 1630
BstFNI CGCG 2 cut(s) 156, 188
BstH2I RGCGCY 1 cut(s) 233
BstHHI GCGC 1 cut(s) 232
BstKTI GATC 6 cut(s) 124, 482, 1003, 1057, 1100, 1586
BstMAI GTCTC 1 cut(s) 1610
BstMBI GATC 6 cut(s) 121, 479, 1000, 1054, 1097, 1583
BstMWI GCNNNNNNNGC 6 cut(s) 138, 153, 229, 932, 975, 1441
BstNI CCWGG 2 cut(s) 1354, 1463
BstNSI RCATGY 2 cut(s) 730, 1609
BstPI GGTNACC 1 cut(s) 1368
BstSCI CCNGG 2 cut(s) 1352, 1461
BstSLI GKGCMC 2 cut(s) 817, 1512
BstUI CGCG 2 cut(s) 156, 188
BstV1I GCAGC 4 cut(s) 919, 987, 1372, 1444
BstV2I GAAGAC 6 cut(s) 513, 549, 567, 729, 1147, 1347
BstX2I RGATCY 4 cut(s) 479, 1054, 1097, 1583
BstXI CCANNNNNNTGG 1 cut(s) 1496
BstYI RGATCY 4 cut(s) 479, 1054, 1097, 1583
Bsu15I ATCGAT 1 cut(s) 120
BsuRI GGCC 1 cut(s) 895
BsuTUI ATCGAT 1 cut(s) 120
BtgI CCRYGG 2 cut(s) 154, 186
BtsCI GGATG 4 cut(s) 73, 1422, 1564, 1630
BtsIMutI CAGTG 2 cut(s) 1237, 1404
Cac8I GCNNGC 4 cut(s) 398, 402, 655, 1387
CciI TCATGA 1 cut(s) 310
CfoI GCGC 1 cut(s) 232
Cfr13I GGNCC 2 cut(s) 136, 893
Cfr42I CCGCGG 2 cut(s) 157, 189
ClaI ATCGAT 1 cut(s) 120
CseI GACGC 1 cut(s) 148
Csp6I GTAC 1 cut(s) 906
CviAII CATG 6 cut(s) 311, 727, 873, 1226, 1382, 1606
CviQI GTAC 1 cut(s) 906
DdeI CTNAG 4 cut(s) 50, 78, 1290, 1518
DinI GGCGCC 1 cut(s) 231
DpnI GATC 6 cut(s) 123, 481, 1002, 1056, 1099, 1585
DpnII GATC 6 cut(s) 121, 479, 1000, 1054, 1097, 1583
Eam1104I CTCTTC 2 cut(s) 213, 1445
EarI CTCTTC 2 cut(s) 213, 1445
EciI GGCGGA 1 cut(s) 206
Eco130I CCWWGG 2 cut(s) 1412, 1554
Eco47I GGWCC 1 cut(s) 136
Eco57I CTGAAG 9 cut(s) 525, 561, 579, 615, 633, 651, 669, 723, 930
Eco91I GGTNACC 1 cut(s) 1368
EcoO65I GGTNACC 1 cut(s) 1368
EcoRI GAATTC 1 cut(s) 347
EcoRII CCWGG 2 cut(s) 1352, 1461
EcoT14I CCWWGG 2 cut(s) 1412, 1554
EgeI GGCGCC 1 cut(s) 231
EheI GGCGCC 1 cut(s) 231
ErhI CCWWGG 2 cut(s) 1412, 1554
FaeI CATG 6 cut(s) 314, 730, 876, 1229, 1385, 1609
FaqI GGGAC 1 cut(s) 419
FatI CATG 6 cut(s) 310, 726, 872, 1225, 1381, 1605
FauNDI CATATG 1 cut(s) 856
FblI GTMKAC 1 cut(s) 1550
Fnu4HI GCNGC 9 cut(s) 99, 157, 186, 189, 203, 933, 976, 1361, 1433
FokI GGATG 3 cut(s) 80, 1429, 1571
Fsp4HI GCNGC 9 cut(s) 99, 157, 186, 189, 203, 933, 976, 1361, 1433
FspBI CTAG 4 cut(s) 378, 654, 711, 890
GlaI GCGC 1 cut(s) 231
GluI GCNGC 9 cut(s) 99, 157, 186, 189, 203, 933, 976, 1361, 1433
GsuI CTGGAG 2 cut(s) 1484, 1631
HaeII RGCGCY 1 cut(s) 233
HaeIII GGCC 1 cut(s) 895
HapII CCGG 4 cut(s) 8, 19, 129, 896
HgaI GACGC 1 cut(s) 148
HhaI GCGC 1 cut(s) 232
Hin1I GRCGYC 2 cut(s) 159, 230
Hin1II CATG 6 cut(s) 314, 730, 876, 1229, 1385, 1609
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
HincII GTYRAC 2 cut(s) 1564, 1603
HindII GTYRAC 2 cut(s) 1564, 1603
HindIII AAGCTT 1 cut(s) 1247
HpaI GTTAAC 2 cut(s) 1564, 1603
HpaII CCGG 4 cut(s) 8, 19, 129, 896
Hpy166II GTNNAC 8 cut(s) 43, 136, 569, 623, 695, 1551, 1564, 1603
Hpy188III TCNNGA 8 cut(s) 166, 175, 311, 758, 982, 1163, 1200, 1577
Hpy8I GTNNAC 8 cut(s) 43, 136, 569, 623, 695, 1551, 1564, 1603
Hpy99I CGWCG 4 cut(s) 61, 164, 167, 975
HpyAV CCTTC 5 cut(s) 238, 430, 590, 1130, 1498
HpyCH4III ACNGT 7 cut(s) 37, 512, 548, 566, 1047, 1526, 1621
HpyCH4IV ACGT 1 cut(s) 300
HpyCH4V TGCA 6 cut(s) 440, 854, 1037, 1069, 1310, 1444
HpyF10VI GCNNNNNNNGC 6 cut(s) 138, 153, 229, 932, 975, 1441
HpyF3I CTNAG 4 cut(s) 50, 78, 1290, 1518
HpySE526I ACGT 1 cut(s) 300
Hsp92I GRCGYC 2 cut(s) 159, 230
Hsp92II CATG 6 cut(s) 314, 730, 876, 1229, 1385, 1609
HspAI GCGC 1 cut(s) 230
KasI GGCGCC 1 cut(s) 229
KspAI GTTAAC 2 cut(s) 1564, 1603
KspI CCGCGG 2 cut(s) 157, 189
Kzo9I GATC 6 cut(s) 121, 479, 1000, 1054, 1097, 1583
LguI GCTCTTC 1 cut(s) 213
LmnI GCTCC 8 cut(s) 4, 106, 199, 370, 757, 1153, 1294, 1357
Lsp1109I GCAGC 4 cut(s) 919, 987, 1372, 1444
LweI GCATC 4 cut(s) 697, 987, 1078, 1119
MaeI CTAG 4 cut(s) 378, 654, 711, 890
MaeII ACGT 1 cut(s) 300
MaeIII GTNAC 1 cut(s) 1368
MalI GATC 6 cut(s) 123, 481, 1002, 1056, 1099, 1585
MboI GATC 6 cut(s) 121, 479, 1000, 1054, 1097, 1583
MfeI CAATTG 2 cut(s) 842, 1064
MflI RGATCY 4 cut(s) 479, 1054, 1097, 1583
MhlI GDGCHC 2 cut(s) 817, 1512
Mly113I GGCGCC 1 cut(s) 230
MlyI GAGTC 6 cut(s) 22, 102, 105, 203, 953, 1582
MmeI TCCRAC 1 cut(s) 177
MseI TTAA 9 cut(s) 456, 476, 789, 1007, 1107, 1170, 1377, 1563, 1602
MslI CAYNNNNRTG 2 cut(s) 1074, 1230
MspA1I CMGCKG 3 cut(s) 156, 188, 404
MspI CCGG 4 cut(s) 8, 19, 129, 896
MspR9I CCNGG 2 cut(s) 1354, 1463
MunI CAATTG 2 cut(s) 842, 1064
Mva1269I GAATGC 1 cut(s) 991
MvaI CCWGG 2 cut(s) 1354, 1463
MvnI CGCG 2 cut(s) 156, 188
MwoI GCNNNNNNNGC 6 cut(s) 138, 153, 229, 932, 975, 1441
NarI GGCGCC 1 cut(s) 230
NdeI CATATG 1 cut(s) 856
NdeII GATC 6 cut(s) 121, 479, 1000, 1054, 1097, 1583
NheI GCTAGC 1 cut(s) 653
NlaIII CATG 6 cut(s) 314, 730, 876, 1229, 1385, 1609
NlaIV GGNNCC 4 cut(s) 6, 201, 231, 900
NmeAIII GCCGAG 2 cut(s) 231, 258
NspI RCATGY 2 cut(s) 730, 1609
PagI TCATGA 1 cut(s) 310
PciI ACATGT 1 cut(s) 726
PciSI GCTCTTC 1 cut(s) 213
PcsI WCGNNNNNNNCGW 2 cut(s) 156, 203
PctI GAATGC 1 cut(s) 991
PfeI GAWTC 5 cut(s) 24, 117, 467, 1159, 1184
PkrI GCNGC 9 cut(s) 100, 158, 187, 190, 204, 934, 977, 1362, 1434
PleI GAGTC 6 cut(s) 21, 101, 105, 202, 953, 1581
PluTI GGCGCC 1 cut(s) 233
PpsI GAGTC 6 cut(s) 21, 101, 105, 202, 953, 1581
PscI ACATGT 1 cut(s) 726
PshBI ATTAAT 1 cut(s) 1377
PsiI TTATAA 1 cut(s) 1533
Psp6I CCWGG 2 cut(s) 1352, 1461
PspEI GGTNACC 1 cut(s) 1368
PspGI CCWGG 2 cut(s) 1352, 1461
PspN4I GGNNCC 4 cut(s) 6, 201, 231, 900
PspPI GGNCC 2 cut(s) 136, 893
PsuI RGATCY 4 cut(s) 479, 1054, 1097, 1583
PvuII CAGCTG 1 cut(s) 404
RsaI GTAC 1 cut(s) 907
RsaNI GTAC 1 cut(s) 906
RseI CAYNNNNRTG 2 cut(s) 1074, 1230
SacII CCGCGG 2 cut(s) 157, 189
SapI GCTCTTC 1 cut(s) 213
SaqAI TTAA 9 cut(s) 456, 476, 789, 1007, 1107, 1170, 1377, 1563, 1602
SatI GCNGC 9 cut(s) 99, 157, 186, 189, 203, 933, 976, 1361, 1433
Sau3AI GATC 6 cut(s) 121, 479, 1000, 1054, 1097, 1583
Sau96I GGNCC 2 cut(s) 136, 893
ScaI AGTACT 1 cut(s) 907
SchI GAGTC 6 cut(s) 22, 102, 105, 203, 953, 1582
ScrFI CCNGG 2 cut(s) 1354, 1463
SduI GDGCHC 2 cut(s) 817, 1512
SfaNI GCATC 4 cut(s) 697, 987, 1078, 1119
SfoI GGCGCC 1 cut(s) 231
Sfr303I CCGCGG 2 cut(s) 157, 189
SgrBI CCGCGG 2 cut(s) 157, 189
SinI GGWCC 1 cut(s) 136
SmiMI CAYNNNNRTG 2 cut(s) 1074, 1230
SmlI CTYRAG 2 cut(s) 921, 1018
SmoI CTYRAG 2 cut(s) 921, 1018
SsiI CCGC 8 cut(s) 99, 139, 154, 156, 186, 188, 191, 203
SspDI GGCGCC 1 cut(s) 229
SspMI CTAG 4 cut(s) 378, 654, 711, 890
StyD4I CCNGG 2 cut(s) 1352, 1461
StyI CCWWGG 2 cut(s) 1412, 1554
TaaI ACNGT 7 cut(s) 37, 512, 548, 566, 1047, 1526, 1621
TaiI ACGT 1 cut(s) 303
TaqI TCGA 6 cut(s) 27, 120, 165, 338, 470, 1212
TatI WGTACW 1 cut(s) 905
TauI GCSGC 5 cut(s) 101, 159, 188, 191, 205
TfiI GAWTC 5 cut(s) 24, 117, 467, 1159, 1184
Tru1I TTAA 9 cut(s) 456, 476, 789, 1007, 1107, 1170, 1377, 1563, 1602
Tru9I TTAA 9 cut(s) 456, 476, 789, 1007, 1107, 1170, 1377, 1563, 1602
TscAI CASTG 2 cut(s) 1237, 1404
TseI GCWGC 4 cut(s) 932, 975, 1360, 1432
TspDTI ATGAA 5 cut(s) 299, 726, 861, 1214, 1442
TspGWI ACGGA 2 cut(s) 276, 1596
TspRI CASTG 2 cut(s) 1237, 1404
VpaK11BI GGWCC 1 cut(s) 136
VspI ATTAAT 1 cut(s) 1377
XapI RAATTY 6 cut(s) 347, 761, 1082, 1121, 1166, 1220
XceI RCATGY 2 cut(s) 730, 1609
XcmI CCANNNNNNNNNTGG 1 cut(s) 408
XmiI GTMKAC 1 cut(s) 1550
XspI CTAG 4 cut(s) 378, 654, 711, 890
ZrmI AGTACT 1 cut(s) 907
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.