Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0000258

Physical Location & Seq

Genomic Coordinates Reverse (-)

16825762 .. 16826133

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g15580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGATCCGAGGGGTGGTGAGTGGACACTGGCGCTTCTCGCCATGTTTGCTGTCGATCGTTCCCTTTTCAAGACATATTATGTGGCTGAAGGAAGGAAGGTGTTGTTAGGTGATTCACACTCAACTGATGTTGCTAGTACTGGAAAGGTGGAGCTAAGGTTCACCTCTGGAAAAACCATGATACTAAAAGATGTGATGCATGCTCCAACGATAAGGAAGAATTTGGTCTCTGGCTTTCTTCTCAACAAGGCTGGATTTACTCAAACCATTGGAGCAGATATGTATACTCTTACTAAAAATGGGGTTTTTGTGGGAAAGGGATATGCTACTGATGGAATGTTTAAATTGAATGTTGATGCTATTAAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000280 GO:0000910 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007112 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0008574 GO:0009524 GO:0009555 GO:0009987 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033206 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048856 GO:0051301 GO:0051321 GO:0051704 GO:0055046 GO:0061640 GO:0071840 GO:0080175 GO:0140013 GO:1903046 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

124

Amino Acids

13.46

Weight (kDa)

9.56

Isoelectric Point (pI)

12.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pol_BBD	PF22936	19 - 86	8.5e-14	Pol polyprotein, beta-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00980
fragaria_vesca	FvH4_1g25682 FvH4_2g13961 FvH4_2g20162 FvH4_2g24753 FvH4_3g12191 FvH4_3g12632 FvH4_3g16171 FvH4_4g05871 FvH4_4g05873 FvH4_4g10121 FvH4_4g15488 FvH4_4g23911 FvH4_4g27782 FvH4_5g08912 FvH4_5g23001 FvH4_5g24552 FvH4_5g32801 FvH4_5g32802 FvH4_6g05093 FvH4_6g19722 FvH4_6g20391 FvH4_6g33792 FvH4_7g01381 FvH4_7g16761 FvH4_7g16761 FvH4_7g16761
malus_domestica	MD01G1082500.v1.1 MD15G1436400.v1.1
prunus_persica	Prupe.2G021400_v2.0.a1 Prupe.2G052400_v2.0.a1 Prupe.2G065000_v2.0.a1 Prupe.2G187700_v2.0.a1 Prupe.2G187800_v2.0.a1 Prupe.2G189900_v2.0.a1 Prupe.2G191300_v2.0.a1 Prupe.2G191700_v2.0.a1 Prupe.4G265600_v2.0.a1 Prupe.7G014200_v2.0.a1 Prupe.7G039000_v2.0.a1
pyrus_communis	pycom01g05590 pycom01g05910 pycom02g12230 pycom02g25840 pycom03g15580 pycom04g04480 pycom05g09230 pycom05g23350 pycom05g23360 pycom07g08380 pycom09g01980 pycom09g01990 pycom11g18190 pycom11g18200 pycom11g21580 pycom13g04160 pycom15g25800 pycom16g16210 pycom16g17230 pycom16g24560 pycom16g25700 pycom17g11020
rosa_chinensis	RchiOBHm_Chr1g0359981 RchiOBHm_Chr2g0151961 RchiOBHm_Chr2g0171331 RchiOBHm_Chr5g0081471 RchiOBHm_Chr6g0283031 RchiOBHm_Chr7g0197111 RchiOBHm_Chr7g0222601
rosa_laevigata	RLG00000027843 RLG00000027845 RLG00000030065
rosa_multiflora	Rmu_sc0000381.1_g000031 Rmu_sc0001179.1_g000035 Rmu_sc0001616.1_g000046 Rmu_sc0001851.1_g000032 Rmu_sc0002152.1_g000013 Rmu_sc0004031.1_g000015 Rmu_sc0004645.1_g000003 Rmu_sc0007393.1_g000001 Rmu_sc0008949.1_g000003 Rmu_sc0009799.1_g000011 Rmu_sc0011614.1_g000001 Rmu_sc0011699.1_g000009 Rmu_sc0019280.1_g000001 Rmu_sc0023984.1_g000001 Rmu_ssc0000050.1_g000036
rosa_roxburghii	Rroxscaffold_1G00022650 Rroxscaffold_1G00033480 Rroxscaffold_3G00270250 Rroxscaffold_4G00296600 Rroxscaffold_4G00296760 Rroxscaffold_6G00409840
rosa_rugosa	Rorug01G0273800 Rorug01G0273900 Rorug01G0274000
rosa_samantha	Rh1AG287300 Rh1AG288100 Rh1BG253000 Rh1BG253500 Rh1BG399800 Rh1CG270400 Rh1CG271000 Rh1DG282000 Rh1DG282500 Rh4DG126500 Rh5DG194600 Rh5DG461100
rosa_wichuraiana	Rw0G009130 Rw1G002590 Rw1G008490 Rw1G012210 Rw1G014290 Rw1G014490 Rw1G025510 Rw2G025840 Rw2G026170 Rw2G036510 Rw3G003050 Rw4G009270 Rw5G002350 Rw5G013930 Rw5G019500 Rw5G025890 Rw5G029960 Rw5G032360 Rw6G009890 Rw6G015670 Rw6G015860 Rw7G010030 Rw7G032600 Rw7G032770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	284
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	220
AcuI	CTGAAG	1 cut(s)	108
AfaI	GTAC	1 cut(s)	139
AfiI	CCNNNNNNNGG	1 cut(s)	14
AgsI	TTSAA	2 cut(s)	70, 349
AloI	GAACNNNNNNTCC	2 cut(s)	143, 175
AluBI	AGCT	1 cut(s)	154
AluI	AGCT	1 cut(s)	154
Alw26I	GTCTC	1 cut(s)	232
AlwI	GGATC	1 cut(s)	12
ApoI	RAATTY	1 cut(s)	220
AspLEI	GCGC	1 cut(s)	34
AsuHPI	GGTGA	3 cut(s)	29, 122, 154
BamHI	GGATCC	1 cut(s)	4
BccI	CCATC	1 cut(s)	326
BcoDI	GTCTC	1 cut(s)	232
BfaI	CTAG	1 cut(s)	135
BfoI	RGCGCY	1 cut(s)	35
BmcAI	AGTACT	1 cut(s)	139
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	2 cut(s)	186, 346
Bpu10I	CCTNAGC	1 cut(s)	155
BsaI	GGTCTC	1 cut(s)	232
BsaJI	CCNNGG	1 cut(s)	8
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse1I	ACTGG	2 cut(s)	33, 145
BseDI	CCNNGG	1 cut(s)	8
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseNI	ACTGG	2 cut(s)	33, 145
Bsh1285I	CGRYCG	1 cut(s)	58
BsiEI	CGRYCG	1 cut(s)	58
BslI	CCNNNNNNNGG	1 cut(s)	14
BsmAI	GTCTC	1 cut(s)	232
Bso31I	GGTCTC	1 cut(s)	232
Bsp143I	GATC	2 cut(s)	4, 55
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	12
BspTNI	GGTCTC	1 cut(s)	232
BsrI	ACTGG	2 cut(s)	33, 145
BssECI	CCNNGG	1 cut(s)	8
BssMI	GATC	2 cut(s)	4, 55
BssNAI	GTATAC	1 cut(s)	285
Bst1107I	GTATAC	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	201
BstDEI	CTNAG	1 cut(s)	155
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	2 cut(s)	7, 58
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	2 cut(s)	4, 55
BstMCI	CGRYCG	1 cut(s)	58
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 47
BstNSI	RCATGY	1 cut(s)	203
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BstZ17I	GTATAC	1 cut(s)	285
BtsIMutI	CAGTG	1 cut(s)	26
Cac8I	GCNNGC	1 cut(s)	201
CfoI	GCGC	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	138
CviAII	CATG	3 cut(s)	43, 178, 200
CviJI	RGCY	4 cut(s)	86, 154, 234, 251
CviKI_1	RGCY	4 cut(s)	86, 154, 234, 251
CviQI	GTAC	1 cut(s)	138
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	2 cut(s)	6, 57
DpnII	GATC	2 cut(s)	4, 55
DraI	TTTAAA	1 cut(s)	343
Eco31I	GGTCTC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	108
EcoT22I	ATGCAT	1 cut(s)	201
FaeI	CATG	3 cut(s)	46, 181, 203
FaiI	YATR	8 cut(s)	44, 76, 81, 179, 201, 281, 285, 324
FatI	CATG	3 cut(s)	42, 177, 199
FblI	GTMKAC	1 cut(s)	284
FspBI	CTAG	1 cut(s)	135
GlaI	GCGC	1 cut(s)	33
HaeII	RGCGCY	1 cut(s)	35
HhaI	GCGC	1 cut(s)	34
Hin1II	CATG	3 cut(s)	46, 181, 203
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HinfI	GANTC	1 cut(s)	113
HphI	GGTGA	3 cut(s)	29, 122, 154
Hpy166II	GTNNAC	3 cut(s)	24, 162, 285
Hpy188I	TCNGA	1 cut(s)	9
Hpy188III	TCNNGA	2 cut(s)	70, 168
Hpy8I	GTNNAC	3 cut(s)	24, 162, 285
HpyAV	CCTTC	3 cut(s)	83, 87, 91
HpyCH4V	TGCA	1 cut(s)	199
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 47
HpyF3I	CTNAG	1 cut(s)	155
Hsp92II	CATG	3 cut(s)	46, 181, 203
HspAI	GCGC	1 cut(s)	32
Kzo9I	GATC	2 cut(s)	4, 55
LmnI	GCTCC	3 cut(s)	151, 208, 272
LpnPI	CCDG	5 cut(s)	14, 126, 153, 216, 237
LweI	GCATC	2 cut(s)	186, 346
MaeI	CTAG	1 cut(s)	135
MalI	GATC	2 cut(s)	6, 57
MboI	GATC	2 cut(s)	4, 55
MboII	GAAGA	2 cut(s)	229, 230
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	2 cut(s)	220, 344
MmeI	TCCRAC	1 cut(s)	230
MnlI	CCTC	2 cut(s)	3, 175
Mph1103I	ATGCAT	1 cut(s)	201
MseI	TTAA	2 cut(s)	342, 363
MwoI	GCNNNNNNNGC	2 cut(s)	38, 47
NdeII	GATC	2 cut(s)	4, 55
NlaIII	CATG	3 cut(s)	46, 181, 203
NlaIV	GGNNCC	1 cut(s)	6
NsiI	ATGCAT	1 cut(s)	201
NspI	RCATGY	1 cut(s)	203
PaeI	GCATGC	1 cut(s)	203
PfeI	GAWTC	1 cut(s)	113
Ple19I	CGATCG	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	4
PvuI	CGATCG	1 cut(s)	58
RsaI	GTAC	1 cut(s)	139
RsaNI	GTAC	1 cut(s)	138
SaqAI	TTAA	2 cut(s)	342, 363
Sau3AI	GATC	2 cut(s)	4, 55
ScaI	AGTACT	1 cut(s)	139
SetI	ASST	6 cut(s)	102, 112, 150, 156, 161, 167
SfaNI	GCATC	2 cut(s)	186, 346
SphI	GCATGC	1 cut(s)	203
Sse9I	AATT	2 cut(s)	220, 344
SspMI	CTAG	1 cut(s)	135
TaqI	TCGA	1 cut(s)	54
TasI	AATT	2 cut(s)	220, 344
TatI	WGTACW	1 cut(s)	137
TfiI	GAWTC	1 cut(s)	113
Tru1I	TTAA	2 cut(s)	342, 363
Tru9I	TTAA	2 cut(s)	342, 363
TscAI	CASTG	1 cut(s)	33
TspRI	CASTG	1 cut(s)	33
XapI	RAATTY	1 cut(s)	220
XceI	RCATGY	1 cut(s)	203
XmiI	GTMKAC	1 cut(s)	284
XspI	CTAG	1 cut(s)	135
ZrmI	AGTACT	1 cut(s)	139
Zsp2I	ATGCAT	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.