gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1016 |
| AclWI | GGATC | 3 cut(s) | 12, 573, 634 |
| AcsI | RAATTY | 6 cut(s) | 53, 301, 362, 680, 695, 742 |
| AcuI | CTGAAG | 2 cut(s) | 468, 933 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1016, 1261 |
| AflIII | ACRYGT | 1 cut(s) | 1129 |
| AjnI | CCWGG | 3 cut(s) | 420, 784, 1254 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 665, 697 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1016, 1048 |
| AluBI | AGCT | 1 cut(s) | 471 |
| AluI | AGCT | 1 cut(s) | 471 |
| AlwI | GGATC | 3 cut(s) | 12, 573, 634 |
| AoxI | GGCC | 1 cut(s) | 735 |
| ApoI | RAATTY | 6 cut(s) | 53, 301, 362, 680, 695, 742 |
| AseI | ATTAAT | 1 cut(s) | 462 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 141, 471, 518, 1292 |
| AspS9I | GGNCC | 1 cut(s) | 1163 |
| AsuHPI | GGTGA | 4 cut(s) | 436, 469, 937, 1031 |
| AvaII | GGWCC | 1 cut(s) | 1163 |
| BanII | GRGCYC | 1 cut(s) | 1269 |
| BbsI | GAAGAC | 1 cut(s) | 600 |
| BccI | CCATC | 2 cut(s) | 373, 617 |
| BciT130I | CCWGG | 3 cut(s) | 422, 786, 1256 |
| BfmI | CTRYAG | 2 cut(s) | 171, 220 |
| Bme1390I | CCNGG | 3 cut(s) | 422, 786, 1256 |
| Bme18I | GGWCC | 1 cut(s) | 1163 |
| BmgT120I | GGNCC | 1 cut(s) | 1163 |
| BmrFI | CCNGG | 3 cut(s) | 422, 786, 1256 |
| BmsI | GCATC | 4 cut(s) | 184, 811, 1055, 1061 |
| BpiI | GAAGAC | 1 cut(s) | 600 |
| BpmI | CTGGAG | 1 cut(s) | 404 |
| BsaBI | GATNNNNATC | 1 cut(s) | 987 |
| BsaJI | CCNNGG | 1 cut(s) | 558 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 150, 180, 1016, 1046 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1016, 1261 |
| Bse1I | ACTGG | 2 cut(s) | 947, 961 |
| Bse8I | GATNNNNATC | 1 cut(s) | 987 |
| BseBI | CCWGG | 3 cut(s) | 422, 786, 1256 |
| BseDI | CCNNGG | 1 cut(s) | 558 |
| BseGI | GGATG | 1 cut(s) | 253 |
| BseJI | GATNNNNATC | 1 cut(s) | 987 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1016, 1261 |
| BseMII | CTCAG | 1 cut(s) | 1110 |
| BseNI | ACTGG | 2 cut(s) | 947, 961 |
| BseRI | GAGGAG | 1 cut(s) | 1037 |
| BseYI | CCCAGC | 1 cut(s) | 768 |
| BshFI | GGCC | 1 cut(s) | 737 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1016, 1261 |
| BsmI | GAATGC | 2 cut(s) | 190, 1294 |
| BsnI | GGCC | 1 cut(s) | 737 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1269 |
| Bsp143I | GATC | 3 cut(s) | 4, 565, 626 |
| Bsp19I | CCATGG | 1 cut(s) | 558 |
| BspANI | GGCC | 1 cut(s) | 737 |
| BspCNI | CTCAG | 1 cut(s) | 1111 |
| BspHI | TCATGA | 2 cut(s) | 129, 433 |
| BspMAI | CTGCAG | 2 cut(s) | 175, 224 |
| BspPI | GGATC | 3 cut(s) | 12, 573, 634 |
| BspQI | GCTCTTC | 1 cut(s) | 1274 |
| BsrI | ACTGG | 2 cut(s) | 947, 961 |
| BssECI | CCNNGG | 1 cut(s) | 558 |
| BssMI | GATC | 3 cut(s) | 4, 565, 626 |
| BssT1I | CCWWGG | 1 cut(s) | 558 |
| Bst2UI | CCWGG | 3 cut(s) | 422, 786, 1256 |
| Bst4CI | ACNGT | 1 cut(s) | 397 |
| Bst6I | CTCTTC | 2 cut(s) | 539, 1274 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 194, 830 |
| BstC8I | GCNNGC | 1 cut(s) | 80 |
| BstDEI | CTNAG | 2 cut(s) | 1119, 1224 |
| BstDSI | CCRYGG | 1 cut(s) | 558 |
| BstEII | GGTNACC | 1 cut(s) | 1250 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1259 |
| BstF5I | GGATG | 1 cut(s) | 253 |
| BstKTI | GATC | 3 cut(s) | 7, 568, 629 |
| BstMBI | GATC | 3 cut(s) | 4, 565, 626 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 194, 535, 734, 830, 875 |
| BstNI | CCWGG | 3 cut(s) | 422, 786, 1256 |
| BstNSI | RCATGY | 2 cut(s) | 716, 1133 |
| BstPI | GGTNACC | 1 cut(s) | 1250 |
| BstSCI | CCNGG | 3 cut(s) | 420, 784, 1254 |
| BstSFI | CTRYAG | 2 cut(s) | 171, 220 |
| BstV2I | GAAGAC | 1 cut(s) | 600 |
| BstX2I | RGATCY | 2 cut(s) | 565, 626 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 510 |
| BstYI | RGATCY | 2 cut(s) | 565, 626 |
| BsuRI | GGCC | 1 cut(s) | 737 |
| BtgI | CCRYGG | 1 cut(s) | 558 |
| BtsCI | GGATG | 1 cut(s) | 253 |
| BtsI | GCAGTG | 1 cut(s) | 282 |
| BtsIMutI | CAGTG | 2 cut(s) | 21, 282 |
| Cac8I | GCNNGC | 1 cut(s) | 80 |
| CciI | TCATGA | 2 cut(s) | 129, 433 |
| Cfr13I | GGNCC | 1 cut(s) | 1163 |
| CseI | GACGC | 1 cut(s) | 341 |
| CviJI | RGCY | 9 cut(s) | 471, 641, 676, 737, 784, 878, 884, 902, 1267 |
| CviKI_1 | RGCY | 9 cut(s) | 471, 641, 676, 737, 784, 878, 884, 902, 1267 |
| DdeI | CTNAG | 2 cut(s) | 1119, 1224 |
| DpnI | GATC | 3 cut(s) | 6, 567, 628 |
| DpnII | GATC | 3 cut(s) | 4, 565, 626 |
| DraI | TTTAAA | 1 cut(s) | 1189 |
| Eam1104I | CTCTTC | 2 cut(s) | 539, 1274 |
| EarI | CTCTTC | 2 cut(s) | 539, 1274 |
| Eco130I | CCWWGG | 1 cut(s) | 558 |
| Eco24I | GRGCYC | 1 cut(s) | 1269 |
| Eco47I | GGWCC | 1 cut(s) | 1163 |
| Eco57I | CTGAAG | 2 cut(s) | 468, 933 |
| Eco91I | GGTNACC | 1 cut(s) | 1250 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1259 |
| EcoO65I | GGTNACC | 1 cut(s) | 1250 |
| EcoRI | GAATTC | 1 cut(s) | 301 |
| EcoRII | CCWGG | 3 cut(s) | 420, 784, 1254 |
| EcoT14I | CCWWGG | 1 cut(s) | 558 |
| EcoT22I | ATGCAT | 2 cut(s) | 199, 1048 |
| EcoT38I | GRGCYC | 1 cut(s) | 1269 |
| ErhI | CCWWGG | 1 cut(s) | 558 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 1277 |
| FokI | GGATG | 1 cut(s) | 260 |
| FriOI | GRGCYC | 1 cut(s) | 1269 |
| GsaI | CCCAGC | 1 cut(s) | 772 |
| GsuI | CTGGAG | 1 cut(s) | 404 |
| HaeIII | GGCC | 1 cut(s) | 737 |
| HgaI | GACGC | 1 cut(s) | 341 |
| HincII | GTYRAC | 1 cut(s) | 919 |
| HindII | GTYRAC | 1 cut(s) | 919 |
| HindIII | AAGCTT | 1 cut(s) | 469 |
| HinfI | GANTC | 2 cut(s) | 1150, 1202 |
| HphI | GGTGA | 4 cut(s) | 436, 469, 937, 1031 |
| Hpy166II | GTNNAC | 3 cut(s) | 67, 919, 996 |
| Hpy188I | TCNGA | 5 cut(s) | 105, 693, 913, 1207, 1284 |
| Hpy188III | TCNNGA | 6 cut(s) | 130, 245, 434, 590, 748, 1136 |
| Hpy8I | GTNNAC | 3 cut(s) | 67, 919, 996 |
| HpyAV | CCTTC | 6 cut(s) | 127, 149, 443, 508, 516, 1223 |
| HpyCH4III | ACNGT | 1 cut(s) | 397 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 194, 535, 734, 830, 875 |
| HpyF3I | CTNAG | 2 cut(s) | 1119, 1224 |
| Kzo9I | GATC | 3 cut(s) | 4, 565, 626 |
| LguI | GCTCTTC | 1 cut(s) | 1274 |
| LmnI | GCTCC | 2 cut(s) | 310, 1024 |
| LweI | GCATC | 4 cut(s) | 184, 811, 1055, 1061 |
| MaeIII | GTNAC | 3 cut(s) | 166, 664, 1250 |
| MalI | GATC | 3 cut(s) | 6, 567, 628 |
| MboI | GATC | 3 cut(s) | 4, 565, 626 |
| MboII | GAAGA | 6 cut(s) | 149, 556, 605, 1159, 1261, 1297 |
| MfeI | CAATTG | 3 cut(s) | 179, 189, 1028 |
| MflI | RGATCY | 2 cut(s) | 565, 626 |
| MhlI | GDGCHC | 1 cut(s) | 1269 |
| MnlI | CCTC | 6 cut(s) | 556, 652, 883, 1015, 1114, 1255 |
| Mph1103I | ATGCAT | 2 cut(s) | 199, 1048 |
| MroXI | GAANNNNTTC | 4 cut(s) | 141, 471, 518, 1292 |
| MseI | TTAA | 4 cut(s) | 462, 756, 1014, 1188 |
| MslI | CAYNNNNRTG | 1 cut(s) | 802 |
| MspR9I | CCNGG | 3 cut(s) | 422, 786, 1256 |
| MunI | CAATTG | 3 cut(s) | 179, 189, 1028 |
| Mva1269I | GAATGC | 2 cut(s) | 190, 1294 |
| MvaI | CCWGG | 3 cut(s) | 422, 786, 1256 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 194, 535, 734, 830, 875 |
| NcoI | CCATGG | 1 cut(s) | 558 |
| NdeII | GATC | 3 cut(s) | 4, 565, 626 |
| NmuCI | GTSAC | 1 cut(s) | 166 |
| NsiI | ATGCAT | 2 cut(s) | 199, 1048 |
| NspI | RCATGY | 2 cut(s) | 716, 1133 |
| PagI | TCATGA | 2 cut(s) | 129, 433 |
| PciI | ACATGT | 1 cut(s) | 1129 |
| PciSI | GCTCTTC | 1 cut(s) | 1274 |
| PctI | GAATGC | 2 cut(s) | 190, 1294 |
| PdmI | GAANNNNTTC | 4 cut(s) | 141, 471, 518, 1292 |
| PfeI | GAWTC | 2 cut(s) | 1150, 1202 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1016 |
| PscI | ACATGT | 1 cut(s) | 1129 |
| PshBI | ATTAAT | 1 cut(s) | 462 |
| Psp6I | CCWGG | 3 cut(s) | 420, 784, 1254 |
| PspEI | GGTNACC | 1 cut(s) | 1250 |
| PspFI | CCCAGC | 1 cut(s) | 768 |
| PspGI | CCWGG | 3 cut(s) | 420, 784, 1254 |
| PspPI | GGNCC | 1 cut(s) | 1163 |
| PstI | CTGCAG | 2 cut(s) | 175, 224 |
| PsuI | RGATCY | 2 cut(s) | 565, 626 |
| RseI | CAYNNNNRTG | 1 cut(s) | 802 |
| SapI | GCTCTTC | 1 cut(s) | 1274 |
| SaqAI | TTAA | 4 cut(s) | 462, 756, 1014, 1188 |
| Sau3AI | GATC | 3 cut(s) | 4, 565, 626 |
| Sau96I | GGNCC | 1 cut(s) | 1163 |
| ScrFI | CCNGG | 3 cut(s) | 422, 786, 1256 |
| SduI | GDGCHC | 1 cut(s) | 1269 |
| SfaNI | GCATC | 4 cut(s) | 184, 811, 1055, 1061 |
| SfcI | CTRYAG | 2 cut(s) | 171, 220 |
| SinI | GGWCC | 1 cut(s) | 1163 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 802 |
| StyD4I | CCNGG | 3 cut(s) | 420, 784, 1254 |
| StyI | CCWWGG | 1 cut(s) | 558 |
| TaaI | ACNGT | 1 cut(s) | 397 |
| TfiI | GAWTC | 2 cut(s) | 1150, 1202 |
| Tru1I | TTAA | 4 cut(s) | 462, 756, 1014, 1188 |
| Tru9I | TTAA | 4 cut(s) | 462, 756, 1014, 1188 |
| TscAI | CASTG | 2 cut(s) | 21, 289 |
| TseFI | GTSAC | 1 cut(s) | 166 |
| Tsp45I | GTSAC | 1 cut(s) | 166 |
| TspDTI | ATGAA | 8 cut(s) | 146, 340, 422, 429, 431, 450, 480, 1024 |
| TspRI | CASTG | 2 cut(s) | 21, 289 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1016 |
| VpaK11BI | GGWCC | 1 cut(s) | 1163 |
| VspI | ATTAAT | 1 cut(s) | 462 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1259 |
| XapI | RAATTY | 6 cut(s) | 53, 301, 362, 680, 695, 742 |
| XceI | RCATGY | 2 cut(s) | 716, 1133 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 565, 649 |
| XmnI | GAANNNNTTC | 4 cut(s) | 141, 471, 518, 1292 |
| Zsp2I | ATGCAT | 2 cut(s) | 199, 1048 |