Rorug01G0273800

Transcriptional Coactivator p15 (PC4)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000258
Physical Location & Seq
Reverse (-)
38628328 .. 38630219
1892 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0273800.1

Sequence Viewer

Length: 1122 bp
ATGCCAGTGCCTGATCCTCCTGAGCGAACCCCTGTGATTTTCGACTCCCAAGTCATTCAATACCAATCTAACATCCCTTCCCAGTTCATATGGCCAGACCACGAGAAGCCGAGCCCCAACCGGCCCGACCTTCTCGCTCCGGCCATCGACCTCAACGGCTTCATCAGCGGTGACCCTGCCATTGTCGCGAACTCGATTCATATAGTCGACCAGGCCTGCAAGAAGCATGGATTCTTCCTCATTGTGAACCACGGAGTTGATCCGGAGCTCATTGCGAAAGCTCACGAGTACATGGACGTGTTCTTTGAGATGAAGCTCTCGGAGAAGCAAAGGGCTCAGAGGAAGGTTGGTGAGAGCTACGGTTATGCTAGTAGCTTCACCGGCAGGTTTAACTCCAAGCTTCCATGGAAAGAAACACTTTCTTTCAGGTACTCTGCTGAGAGCCAGAGCTCAACAGTCGTCAAGGACTACTTTGTGAATATGTTGGGTGAAGATTTCAGAGAAATGGGGAAGTTTTACCAAGAATACTGTGAAGTGATGAACGAACTATCCAAGGGGATACTGGAGCTATTGGGACTGAGCCTGGCAGTTGGGCGGGAGTACTTGAAAGAGTTCTACGAAGGAAACGATTCGATCATGAGGTTGAACTACTATCCAATGTGCCAAAAACCAGATTTAACACTGGGAACTGGGCCTCACTGTGATCCAACTTCCTTGACAATCCTTCATCAGGATCAAGTAGGGGGCCTTGAAATGTTTTTCGATGAGAAGTGGCACATCGTTACTCCTGTTCTTGGTTCTTTCGTTGTCAACATTGGTGATACTTTTATGGCTCTGAGCAATGGGATTTACAAGAGCTGCTTGCACAGGGCTGTGGTAAACAACAAAGATGTAAGAAAATCTCTTACTTTCTTTCTGAATTCAAACAAGGACAGAGTAGTGACTCCACTAGCAAGTTTGATCAGTGCTGATAACCCGAGGTTGTACCCGGACTTTACTTGGCCTACTCTGCTAGAGTTTACCCAGAAACAGTATAGGGCTGACAGGAGCACCATTGATGCTTTCTCGGACTGGATTAATAAGCAGAAGGGTGGAGAGGAAAAGAAAGACCAAGGAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DEK_C PC4 Retrotran_gag_2 zf-CCHC

Protein Analysis

373

Amino Acids

42.49

Weight (kDa)

5.55

Isoelectric Point (pI)

35.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 47 - 150 1e-21 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 210 - 307 1.2e-32 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00980
fragaria_vesca FvH4_1g25682 FvH4_2g13961 FvH4_2g20162 FvH4_2g24753 FvH4_3g12191 FvH4_3g12632 FvH4_3g16171 FvH4_4g05871 FvH4_4g05873 FvH4_4g10121 FvH4_4g15488 FvH4_4g23911 FvH4_4g27782 FvH4_5g08912 FvH4_5g23001 FvH4_5g24552 FvH4_5g32801 FvH4_5g32802 FvH4_6g05093 FvH4_6g19722 FvH4_6g20391 FvH4_6g33792 FvH4_7g01381 FvH4_7g16761 FvH4_7g16761 FvH4_7g16761
malus_domestica MD01G1082500.v1.1 MD15G1436400.v1.1
prunus_persica Prupe.2G021400_v2.0.a1 Prupe.2G052400_v2.0.a1 Prupe.2G065000_v2.0.a1 Prupe.2G187700_v2.0.a1 Prupe.2G187800_v2.0.a1 Prupe.2G189900_v2.0.a1 Prupe.2G191300_v2.0.a1 Prupe.2G191700_v2.0.a1 Prupe.4G265600_v2.0.a1 Prupe.7G014200_v2.0.a1 Prupe.7G039000_v2.0.a1
pyrus_communis pycom01g05590 pycom01g05910 pycom02g12230 pycom02g25840 pycom03g15580 pycom04g04480 pycom05g09230 pycom05g23350 pycom05g23360 pycom07g08380 pycom09g01980 pycom09g01990 pycom11g18190 pycom11g18200 pycom11g21580 pycom13g04160 pycom15g25800 pycom16g16210 pycom16g17230 pycom16g24560 pycom16g25700 pycom17g11020
rosa_chinensis RchiOBHm_Chr1g0359981 RchiOBHm_Chr2g0151961 RchiOBHm_Chr2g0171331 RchiOBHm_Chr5g0081471 RchiOBHm_Chr6g0283031 RchiOBHm_Chr7g0197111 RchiOBHm_Chr7g0222601
rosa_laevigata RLG00000027843 RLG00000027845 RLG00000030065
rosa_multiflora Rmu_sc0000381.1_g000031 Rmu_sc0001179.1_g000035 Rmu_sc0001616.1_g000046 Rmu_sc0001851.1_g000032 Rmu_sc0002152.1_g000013 Rmu_sc0004031.1_g000015 Rmu_sc0004645.1_g000003 Rmu_sc0007393.1_g000001 Rmu_sc0008949.1_g000003 Rmu_sc0009799.1_g000011 Rmu_sc0011614.1_g000001 Rmu_sc0011699.1_g000009 Rmu_sc0019280.1_g000001 Rmu_sc0023984.1_g000001 Rmu_ssc0000050.1_g000036
rosa_roxburghii Rroxscaffold_1G00022650 Rroxscaffold_1G00033480 Rroxscaffold_3G00270250 Rroxscaffold_4G00296600 Rroxscaffold_4G00296760 Rroxscaffold_6G00409840
rosa_rugosa Rorug01G0273800 Rorug01G0273900 Rorug01G0274000
rosa_samantha Rh1AG287300 Rh1AG288100 Rh1BG253000 Rh1BG253500 Rh1BG399800 Rh1CG270400 Rh1CG271000 Rh1DG282000 Rh1DG282500 Rh4DG126500 Rh5DG194600 Rh5DG461100
rosa_wichuraiana Rw0G009130 Rw1G002590 Rw1G008490 Rw1G012210 Rw1G014290 Rw1G014490 Rw1G025510 Rw2G025840 Rw2G026170 Rw2G036510 Rw3G003050 Rw4G009270 Rw5G002350 Rw5G013930 Rw5G019500 Rw5G025890 Rw5G029960 Rw5G032360 Rw6G009890 Rw6G015670 Rw6G015860 Rw7G010030 Rw7G032600 Rw7G032770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 50
Acc36I ACCTGC 1 cut(s) 375
AccI GTMKAC 1 cut(s) 207
AccII CGCG 1 cut(s) 188
AccIII TCCGGA 1 cut(s) 262
AciI CCGC 2 cut(s) 168, 595
AclWI GGATC 4 cut(s) 8, 254, 698, 741
AcoI YGGCCR 2 cut(s) 92, 141
AcsI RAATTY 1 cut(s) 919
AfaI GTAC 4 cut(s) 290, 431, 602, 986
AfiI CCNNNNNNNGG 2 cut(s) 730, 794
AflIII ACRYGT 1 cut(s) 297
AgsI TTSAA 5 cut(s) 59, 607, 646, 752, 924
AjiI CACGTC 1 cut(s) 298
AjnI CCWGG 2 cut(s) 210, 582
AloI GAACNNNNNNTCC 2 cut(s) 533, 565
AluBI AGCT 9 cut(s) 268, 281, 316, 357, 375, 400, 450, 568, 858
AluI AGCT 9 cut(s) 268, 281, 316, 357, 375, 400, 450, 568, 858
Alw21I GWGCWC 3 cut(s) 270, 452, 1052
AlwI GGATC 4 cut(s) 8, 254, 698, 741
AlwNI CAGNNNCTG 1 cut(s) 11
Ama87I CYCGRG 1 cut(s) 976
Aor13HI TCCGGA 1 cut(s) 262
AoxI GGCC 7 cut(s) 92, 122, 141, 213, 692, 745, 1001
ApeKI GCWGC 1 cut(s) 858
ApoI RAATTY 1 cut(s) 919
ArsI GACNNNNNNTTYG 2 cut(s) 287, 319
AseI ATTAAT 1 cut(s) 1077
Asp700I GAANNNNTTC 2 cut(s) 611, 628
AspS9I GGNCC 3 cut(s) 123, 692, 745
AsuC2I CCSGG 1 cut(s) 989
AsuHPI GGTGA 5 cut(s) 182, 362, 370, 500, 830
AvaI CYCGRG 1 cut(s) 976
BalI TGGCCA 1 cut(s) 94
BanII GRGCYC 4 cut(s) 116, 270, 337, 452
BauI CACGAG 2 cut(s) 101, 284
Bbv12I GWGCWC 3 cut(s) 270, 452, 1052
BbvI GCAGC 1 cut(s) 845
BccI CCATC 1 cut(s) 152
BceAI ACGGC 1 cut(s) 172
BciT130I CCWGG 2 cut(s) 212, 584
BciVI GTATCC 1 cut(s) 552
BclI TGATCA 1 cut(s) 960
BcnI CCSGG 1 cut(s) 989
BfaI CTAG 4 cut(s) 369, 950, 1013, 1120
BfuAI ACCTGC 1 cut(s) 375
BfuI GTATCC 1 cut(s) 552
BisI GCNGC 1 cut(s) 859
BlsI GCNGC 1 cut(s) 860
BmcAI AGTACT 1 cut(s) 602
Bme1390I CCNGG 3 cut(s) 212, 584, 989
BmeT110I CYCGRG 1 cut(s) 976
BmgBI CACGTC 1 cut(s) 298
BmgT120I GGNCC 3 cut(s) 123, 692, 745
BmiI GGNNCC 1 cut(s) 746
BmrFI CCNGG 3 cut(s) 212, 584, 989
BmrI ACTGGG 3 cut(s) 76, 692, 699
BmsI GCATC 1 cut(s) 1048
BmuI ACTGGG 3 cut(s) 76, 692, 699
BpmI CTGGAG 1 cut(s) 584
Bpu10I CCTNAGC 1 cut(s) 21
BpuMI CCSGG 1 cut(s) 989
BsaJI CCNNGG 5 cut(s) 250, 404, 552, 977, 1111
BsaWI WCCGGW 1 cut(s) 262
Bsc4I CCNNNNNNNGG 2 cut(s) 730, 794
Bse118I RCCGGY 2 cut(s) 120, 380
Bse1I ACTGG 6 cut(s) 5, 82, 567, 687, 694, 1076
Bse3DI GCAATG 2 cut(s) 270, 847
BseAI TCCGGA 1 cut(s) 262
BseBI CCWGG 2 cut(s) 212, 584
BseDI CCNNGG 5 cut(s) 250, 404, 552, 977, 1111
BseGI GGATG 1 cut(s) 72
BseLI CCNNNNNNNGG 2 cut(s) 730, 794
BseMI GCAATG 2 cut(s) 270, 847
BseMII CTCAG 5 cut(s) 12, 350, 429, 569, 827
BseNI ACTGG 6 cut(s) 5, 82, 567, 687, 694, 1076
BseXI GCAGC 1 cut(s) 845
Bsh1236I CGCG 1 cut(s) 188
BshFI GGCC 7 cut(s) 94, 124, 143, 215, 694, 747, 1003
BsiHKAI GWGCWC 3 cut(s) 270, 452, 1052
BsiHKCI CYCGRG 1 cut(s) 976
BsiSI CCGG 5 cut(s) 121, 140, 263, 381, 989
BslFI GGGAC 1 cut(s) 588
BslI CCNNNNNNNGG 2 cut(s) 730, 794
BsmFI GGGAC 1 cut(s) 588
BsnI GGCC 7 cut(s) 94, 124, 143, 215, 694, 747, 1003
BsoBI CYCGRG 1 cut(s) 976
Bsp1286I GDGCHC 5 cut(s) 116, 270, 337, 452, 1052
Bsp13I TCCGGA 1 cut(s) 262
Bsp143I GATC 6 cut(s) 13, 259, 633, 703, 733, 960
Bsp19I CCATGG 1 cut(s) 404
Bsp68I TCGCGA 1 cut(s) 188
BspACI CCGC 2 cut(s) 168, 595
BspANI GGCC 7 cut(s) 94, 124, 143, 215, 694, 747, 1003
BspCNI CTCAG 5 cut(s) 13, 349, 430, 570, 828
BspEI TCCGGA 1 cut(s) 262
BspFNI CGCG 1 cut(s) 188
BspHI TCATGA 1 cut(s) 636
BspLI GGNNCC 1 cut(s) 746
BspMI ACCTGC 1 cut(s) 375
BspPI GGATC 4 cut(s) 8, 254, 698, 741
BsrDI GCAATG 2 cut(s) 270, 847
BsrFI RCCGGY 2 cut(s) 120, 380
BsrI ACTGG 6 cut(s) 5, 82, 567, 687, 694, 1076
BssAI RCCGGY 2 cut(s) 120, 380
BssECI CCNNGG 5 cut(s) 250, 404, 552, 977, 1111
BssMI GATC 6 cut(s) 13, 259, 633, 703, 733, 960
BssSI CACGAG 2 cut(s) 101, 284
BssT1I CCWWGG 3 cut(s) 404, 552, 1111
Bst2BI CACGAG 2 cut(s) 101, 284
Bst2UI CCWGG 2 cut(s) 212, 584
Bst4CI ACNGT 5 cut(s) 362, 457, 530, 701, 1032
BstC8I GCNNGC 2 cut(s) 217, 863
BstDEI CTNAG 5 cut(s) 21, 336, 438, 578, 836
BstDSI CCRYGG 2 cut(s) 250, 404
BstEII GGTNACC 1 cut(s) 170
BstENI CCTNNNNNAGG 1 cut(s) 728
BstF5I GGATG 1 cut(s) 72
BstFNI CGCG 1 cut(s) 188
BstKTI GATC 6 cut(s) 16, 262, 636, 706, 736, 963
BstMBI GATC 6 cut(s) 13, 259, 633, 703, 733, 960
BstMWI GCNNNNNNNGC 4 cut(s) 165, 185, 381, 1009
BstNI CCWGG 2 cut(s) 212, 584
BstPI GGTNACC 1 cut(s) 170
BstSCI CCNGG 3 cut(s) 210, 582, 987
BstUI CGCG 1 cut(s) 188
BstV1I GCAGC 1 cut(s) 845
BsuI GTATCC 1 cut(s) 552
BsuRI GGCC 7 cut(s) 94, 124, 143, 215, 694, 747, 1003
BtgI CCRYGG 2 cut(s) 250, 404
BtrI CACGTC 1 cut(s) 298
BtsCI GGATG 1 cut(s) 72
BtsIMutI CAGTG 4 cut(s) 12, 680, 697, 970
BtuMI TCGCGA 1 cut(s) 188
BveI ACCTGC 1 cut(s) 375
Cac8I GCNNGC 2 cut(s) 217, 863
CaiI CAGNNNCTG 1 cut(s) 11
CciI TCATGA 1 cut(s) 636
Cfr10I RCCGGY 2 cut(s) 120, 380
Cfr13I GGNCC 3 cut(s) 123, 692, 745
Csp6I GTAC 4 cut(s) 289, 430, 601, 985
CviAII CATG 4 cut(s) 227, 292, 405, 637
CviQI GTAC 4 cut(s) 289, 430, 601, 985
DdeI CTNAG 5 cut(s) 21, 336, 438, 578, 836
DpnI GATC 6 cut(s) 15, 261, 635, 705, 735, 962
DpnII GATC 6 cut(s) 13, 259, 633, 703, 733, 960
DrdI GACNNNNNNGTC 1 cut(s) 50
DseDI GACNNNNNNGTC 1 cut(s) 50
EaeI YGGCCR 2 cut(s) 92, 141
Ecl136II GAGCTC 2 cut(s) 268, 450
Eco130I CCWWGG 3 cut(s) 404, 552, 1111
Eco147I AGGCCT 1 cut(s) 215
Eco24I GRGCYC 4 cut(s) 116, 270, 337, 452
Eco53kI GAGCTC 2 cut(s) 268, 450
Eco88I CYCGRG 1 cut(s) 976
Eco91I GGTNACC 1 cut(s) 170
EcoICRI GAGCTC 2 cut(s) 268, 450
EcoNI CCTNNNNNAGG 1 cut(s) 728
EcoO109I RGGNCCY 1 cut(s) 745
EcoO65I GGTNACC 1 cut(s) 170
EcoRI GAATTC 1 cut(s) 919
EcoRII CCWGG 2 cut(s) 210, 582
EcoT14I CCWWGG 3 cut(s) 404, 552, 1111
EcoT38I GRGCYC 4 cut(s) 116, 270, 337, 452
ErhI CCWWGG 3 cut(s) 404, 552, 1111
FaeI CATG 4 cut(s) 230, 295, 408, 640
FalI AAGNNNNNCTT 6 cut(s) 402, 434, 455, 487, 845, 877
FaqI GGGAC 1 cut(s) 588
FatI CATG 4 cut(s) 226, 291, 404, 636
FauI CCCGC 1 cut(s) 588
FauNDI CATATG 1 cut(s) 89
FbaI TGATCA 1 cut(s) 960
FblI GTMKAC 1 cut(s) 207
Fnu4HI GCNGC 1 cut(s) 859
FokI GGATG 1 cut(s) 59
FriOI GRGCYC 4 cut(s) 116, 270, 337, 452
Fsp4HI GCNGC 1 cut(s) 859
FspBI CTAG 4 cut(s) 369, 950, 1013, 1120
GluI GCNGC 1 cut(s) 859
GsuI CTGGAG 1 cut(s) 584
HaeIII GGCC 7 cut(s) 94, 124, 143, 215, 694, 747, 1003
HapII CCGG 5 cut(s) 121, 140, 263, 381, 989
Hin1II CATG 4 cut(s) 230, 295, 408, 640
HincII GTYRAC 2 cut(s) 208, 811
HindII GTYRAC 2 cut(s) 208, 811
HindIII AAGCTT 1 cut(s) 398
HinfI GANTC 5 cut(s) 44, 196, 231, 629, 943
HpaII CCGG 5 cut(s) 121, 140, 263, 381, 989
HphI GGTGA 5 cut(s) 182, 362, 370, 500, 830
Hpy166II GTNNAC 5 cut(s) 208, 247, 811, 880, 1020
Hpy188I TCNGA 6 cut(s) 322, 339, 500, 837, 918, 1069
Hpy188III TCNNGA 6 cut(s) 20, 187, 263, 284, 637, 731
Hpy8I GTNNAC 5 cut(s) 208, 247, 811, 880, 1020
HpyAV CCTTC 6 cut(s) 87, 140, 337, 614, 734, 1081
HpyCH4III ACNGT 5 cut(s) 362, 457, 530, 701, 1032
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 2 cut(s) 219, 865
HpyF10VI GCNNNNNNNGC 4 cut(s) 165, 185, 381, 1009
HpyF3I CTNAG 5 cut(s) 21, 336, 438, 578, 836
HpySE526I ACGT 1 cut(s) 297
Hsp92II CATG 4 cut(s) 230, 295, 408, 640
Kpn2I TCCGGA 1 cut(s) 262
Ksp22I TGATCA 1 cut(s) 960
Kzo9I GATC 6 cut(s) 13, 259, 633, 703, 733, 960
LmnI GCTCC 4 cut(s) 142, 265, 565, 1047
Lsp1109I GCAGC 1 cut(s) 845
LweI GCATC 1 cut(s) 1048
MaeI CTAG 4 cut(s) 369, 950, 1013, 1120
MaeII ACGT 1 cut(s) 297
MaeIII GTNAC 3 cut(s) 170, 781, 940
MalI GATC 6 cut(s) 15, 261, 635, 705, 735, 962
MboI GATC 6 cut(s) 13, 259, 633, 703, 733, 960
MboII GAAGA 2 cut(s) 226, 503
MhlI GDGCHC 5 cut(s) 116, 270, 337, 452, 1052
MlsI TGGCCA 1 cut(s) 94
MluCI AATT 1 cut(s) 919
MluNI TGGCCA 1 cut(s) 94
MlyI GAGTC 2 cut(s) 38, 937
MmeI TCCRAC 1 cut(s) 731
MnlI CCTC 8 cut(s) 27, 161, 248, 333, 633, 705, 972, 1090
Mox20I TGGCCA 1 cut(s) 94
MroI TCCGGA 1 cut(s) 262
MroXI GAANNNNTTC 2 cut(s) 611, 628
MscI TGGCCA 1 cut(s) 94
MseI TTAA 3 cut(s) 390, 677, 1077
MslI CAYNNNNRTG 1 cut(s) 296
Msp20I TGGCCA 1 cut(s) 94
MspA1I CMGCKG 1 cut(s) 168
MspI CCGG 5 cut(s) 121, 140, 263, 381, 989
MspR9I CCNGG 3 cut(s) 212, 584, 989
MvaI CCWGG 2 cut(s) 212, 584
MvnI CGCG 1 cut(s) 188
MwoI GCNNNNNNNGC 4 cut(s) 165, 185, 381, 1009
NciI CCSGG 1 cut(s) 989
NcoI CCATGG 1 cut(s) 404
NdeI CATATG 1 cut(s) 89
NdeII GATC 6 cut(s) 13, 259, 633, 703, 733, 960
NlaIII CATG 4 cut(s) 230, 295, 408, 640
NlaIV GGNNCC 1 cut(s) 746
NmeAIII GCCGAG 1 cut(s) 135
NmuCI GTSAC 2 cut(s) 170, 940
NruI TCGCGA 1 cut(s) 188
PagI TCATGA 1 cut(s) 636
PceI AGGCCT 1 cut(s) 215
PcsI WCGNNNNNNNCGW 1 cut(s) 624
PdmI GAANNNNTTC 2 cut(s) 611, 628
PfeI GAWTC 3 cut(s) 196, 231, 629
PkrI GCNGC 1 cut(s) 860
PleI GAGTC 2 cut(s) 38, 937
PpsI GAGTC 2 cut(s) 38, 937
PshBI ATTAAT 1 cut(s) 1077
Psp124BI GAGCTC 2 cut(s) 270, 452
Psp6I CCWGG 2 cut(s) 210, 582
PspEI GGTNACC 1 cut(s) 170
PspGI CCWGG 2 cut(s) 210, 582
PspN4I GGNNCC 1 cut(s) 746
PspPI GGNCC 3 cut(s) 123, 692, 745
PstNI CAGNNNCTG 1 cut(s) 11
RruI TCGCGA 1 cut(s) 188
RsaI GTAC 4 cut(s) 290, 431, 602, 986
RsaNI GTAC 4 cut(s) 289, 430, 601, 985
RseI CAYNNNNRTG 1 cut(s) 296
SacI GAGCTC 2 cut(s) 270, 452
SalI GTCGAC 1 cut(s) 206
SaqAI TTAA 3 cut(s) 390, 677, 1077
SatI GCNGC 1 cut(s) 859
Sau3AI GATC 6 cut(s) 13, 259, 633, 703, 733, 960
Sau96I GGNCC 3 cut(s) 123, 692, 745
ScaI AGTACT 1 cut(s) 602
SchI GAGTC 2 cut(s) 38, 937
ScrFI CCNGG 3 cut(s) 212, 584, 989
SduI GDGCHC 5 cut(s) 116, 270, 337, 452, 1052
SfaNI GCATC 1 cut(s) 1048
SmiMI CAYNNNNRTG 1 cut(s) 296
Sse9I AATT 1 cut(s) 919
SseBI AGGCCT 1 cut(s) 215
SsiI CCGC 2 cut(s) 168, 595
SspMI CTAG 4 cut(s) 369, 950, 1013, 1120
SstI GAGCTC 2 cut(s) 270, 452
StuI AGGCCT 1 cut(s) 215
StyD4I CCNGG 3 cut(s) 210, 582, 987
StyI CCWWGG 3 cut(s) 404, 552, 1111
TaaI ACNGT 5 cut(s) 362, 457, 530, 701, 1032
TaiI ACGT 1 cut(s) 300
TaqI TCGA 6 cut(s) 42, 147, 194, 207, 632, 762
TasI AATT 1 cut(s) 919
TatI WGTACW 2 cut(s) 288, 600
TfiI GAWTC 3 cut(s) 196, 231, 629
Tru1I TTAA 3 cut(s) 390, 677, 1077
Tru9I TTAA 3 cut(s) 390, 677, 1077
TscAI CASTG 4 cut(s) 12, 687, 704, 970
TseFI GTSAC 2 cut(s) 170, 940
TseI GCWGC 1 cut(s) 858
Tsp45I GTSAC 2 cut(s) 170, 940
TspDTI ATGAA 6 cut(s) 76, 151, 188, 326, 554, 716
TspGWI ACGGA 1 cut(s) 267
TspRI CASTG 4 cut(s) 12, 687, 704, 970
VspI ATTAAT 1 cut(s) 1077
XagI CCTNNNNNAGG 1 cut(s) 728
XapI RAATTY 1 cut(s) 919
XcmI CCANNNNNNNNNTGG 1 cut(s) 559
XmiI GTMKAC 1 cut(s) 207
XmnI GAANNNNTTC 2 cut(s) 611, 628
XspI CTAG 4 cut(s) 369, 950, 1013, 1120
ZrmI AGTACT 1 cut(s) 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.