RLG00000027843

Transcriptional Coactivator p15 (PC4)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000258
Physical Location & Seq
Reverse (-)
15963977 .. 15967445
3469 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027843

Sequence Viewer

Length: 1980 bp
ATGACGACGACGAGCAGTGAGAAGAAGAAGAAGACTCGGGAGTTGCCGAACCTGACGGAGTGCCATTGCTGCCACCTCAGAGTCGACCTCACCAAATCCTCCAAGAACAACAAGCTTCAGATACTCTACAGCGAGTGGCGGATCGTCCTCCTCTGCAACAAGTGCTTGGCCCGCGTCGAATCCACCGAGCTCTGCTCCTACTGCTTCAACGACTCGTCGTTCGGCCACTGCTTCTCTTGCCGCCAGTACAAGCGGCGAGTCCACCGGGATTGCGATTCCGAGTACCGCAGCGCCGCCGTCTGGTCCGGGTCGTTGTCTGCTGCCACCGACCAGAAAAATAATCGGCGAATGGAGCCGGAGGGTCGCCGGAGAATCGAGGAAACGGTGGTGAACATACTGAGGACAACGAGCTTGGATGAGATGACCGAGTTCAAAGTCCGAGTCGCCGCCTCGGAGCGACTCGGAATCGATCTCTCCTGTGTGGACCGCAAGAGCTTCGTCCGCGGCGTCGTCGAGAGTTTCCTGATTTCGGCCGCGGCGGAGGCGGAGCCGCCGAGCGTTCGGGAAGAGCAGGAGGCGGCGAGGTTGAAGAAGGAGGCGAATGAGGACGGAGAGCGTGTTGTTTGTAAGCTGACGAACAGGAGAAACGTGGTGATTCATGATTTCAGAGGGAAAACATTGGTTTCGATTAGGGAATTCTATAAGAAAGGTGGAAAGGAGCTTCCTAGTGCCAGAGGAATTAGCTTGCCAGCTGAACAATGGACAACCTTCAAAAATAGTGTCCCTGCAATAGAGGAAGCAATTAAAAAGATGGAATCGAAGTTAAGATCTGAAATTGATAGTAAACAAACTGAAGACGGTAAAGAAACTAAATATGGCAAACAAACTGAAGACGGTAAAGAAACTGAAGATGGTAAACAAGTTGAAGATGGCAAACGAACTGAAGGTAGCAAACGAACTGAAGATGGTAAACAAGCTGAAGATGGCAAACAATCTGAAGCTAGCAAACGAATTGAAGATGGCGAACAAAATGGAGATGGTAAACAAACTGAAGATGCTAGACAAAGTGAAGACACATCTGCTTCATTGAATGGTATTGCTCCTCGTGAATTTTTCTCTATCGAAACTTGCCGTTTTAATGGGAAGAACTACCCTATCTGGGCACAACAGATGGAGTTTCTGCTAAAGCAATTGAAAATTGCATATGTGCTTTTTGTTTCATGCCCGGTCATTACATTAGGCCCGGAACCAAGTACTGAAGAAATTGCTCAAGCAAAGGCTGCTGAACAGCAATGGAGGAATGATGACTCTGTGTGCCGTCGCAGCATCTTGAATGCTCTATCTGATGATCTGTTAAATCTTTACTCAAGGAGAACTATGACTGCAAAAGAACTGTGGGAAGATCTAAAACAATTGCATCTCTATGAGAAATTTGGAACGAAGAGATCTCTGGTTAAAAAGTATATGGAATTTCAGATGCTTGAAGGAAGACCAGTTTTGGAGCAAATTCAAGATATTAATAACATTGCCGATTCCATTGTCGCTTCTGGAATGGTGGTCGAGGAGAAATTTCATGTCAGTGCCGTTATCTCCAAGCTTCCCCCATCTTGGAAGGATGTGAGTATCAAGTTGATGTCTGAGGAGCATTTACCTTTTGCAAATATGATGGATCGTTTGAGGTTTGAAGAAGACTTGCGAACCAGGGAGCAGCAGGGGTTACCCATTAATCATGCTGGCAATCCACCAGTGAAACCCATACCAAGGATGAGAGATATGAAGCAGCGAAATATGCAATGGAAGAGGTCAGACCCGGAGATTGATGGTAGAGTTATTTGCCAATTTTGTGGCAAGAAGGGGCACATCTCTCAGAACTGTCGTTATAATAATAAGAGGAAGTTTACCAAGGATGTTAACGATGAGAGTCACGACGGATCTATGCCTATGGAGGTTAATATGCTGGAGGAGACTGTGGATGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DEK_C PC4 Retrotran_gag_2 zf-CCHC

Protein Analysis

660

Amino Acids

75.5

Weight (kDa)

7.76

Isoelectric Point (pI)

63.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEK_C PF08766 124 - 175 1.6e-10 DEK C terminal domain
PC4 PF02229 209 - 259 5e-17 Transcriptional Coactivator p15 (PC4)
Retrotran_gag_2 PF14223 418 - 568 4.7e-20 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00980
fragaria_vesca FvH4_1g25682 FvH4_2g13961 FvH4_2g20162 FvH4_2g24753 FvH4_3g12191 FvH4_3g12632 FvH4_3g16171 FvH4_4g05871 FvH4_4g05873 FvH4_4g10121 FvH4_4g15488 FvH4_4g23911 FvH4_4g27782 FvH4_5g08912 FvH4_5g23001 FvH4_5g24552 FvH4_5g32801 FvH4_5g32802 FvH4_6g05093 FvH4_6g19722 FvH4_6g20391 FvH4_6g33792 FvH4_7g01381 FvH4_7g16761 FvH4_7g16761 FvH4_7g16761
malus_domestica MD01G1082500.v1.1 MD15G1436400.v1.1
prunus_persica Prupe.2G021400_v2.0.a1 Prupe.2G052400_v2.0.a1 Prupe.2G065000_v2.0.a1 Prupe.2G187700_v2.0.a1 Prupe.2G187800_v2.0.a1 Prupe.2G189900_v2.0.a1 Prupe.2G191300_v2.0.a1 Prupe.2G191700_v2.0.a1 Prupe.4G265600_v2.0.a1 Prupe.7G014200_v2.0.a1 Prupe.7G039000_v2.0.a1
pyrus_communis pycom01g05590 pycom01g05910 pycom02g12230 pycom02g25840 pycom03g15580 pycom04g04480 pycom05g09230 pycom05g23350 pycom05g23360 pycom07g08380 pycom09g01980 pycom09g01990 pycom11g18190 pycom11g18200 pycom11g21580 pycom13g04160 pycom15g25800 pycom16g16210 pycom16g17230 pycom16g24560 pycom16g25700 pycom17g11020
rosa_chinensis RchiOBHm_Chr1g0359981 RchiOBHm_Chr2g0151961 RchiOBHm_Chr2g0171331 RchiOBHm_Chr5g0081471 RchiOBHm_Chr6g0283031 RchiOBHm_Chr7g0197111 RchiOBHm_Chr7g0222601
rosa_laevigata RLG00000027843 RLG00000027845 RLG00000030065
rosa_multiflora Rmu_sc0000381.1_g000031 Rmu_sc0001179.1_g000035 Rmu_sc0001616.1_g000046 Rmu_sc0001851.1_g000032 Rmu_sc0002152.1_g000013 Rmu_sc0004031.1_g000015 Rmu_sc0004645.1_g000003 Rmu_sc0007393.1_g000001 Rmu_sc0008949.1_g000003 Rmu_sc0009799.1_g000011 Rmu_sc0011614.1_g000001 Rmu_sc0011699.1_g000009 Rmu_sc0019280.1_g000001 Rmu_sc0023984.1_g000001 Rmu_ssc0000050.1_g000036
rosa_roxburghii Rroxscaffold_1G00022650 Rroxscaffold_1G00033480 Rroxscaffold_3G00270250 Rroxscaffold_4G00296600 Rroxscaffold_4G00296760 Rroxscaffold_6G00409840
rosa_rugosa Rorug01G0273800 Rorug01G0273900 Rorug01G0274000
rosa_samantha Rh1AG287300 Rh1AG288100 Rh1BG253000 Rh1BG253500 Rh1BG399800 Rh1CG270400 Rh1CG271000 Rh1DG282000 Rh1DG282500 Rh4DG126500 Rh5DG194600 Rh5DG461100
rosa_wichuraiana Rw0G009130 Rw1G002590 Rw1G008490 Rw1G012210 Rw1G014290 Rw1G014490 Rw1G025510 Rw2G025840 Rw2G026170 Rw2G036510 Rw3G003050 Rw4G009270 Rw5G002350 Rw5G013930 Rw5G019500 Rw5G025890 Rw5G029960 Rw5G032360 Rw6G009890 Rw6G015670 Rw6G015860 Rw7G010030 Rw7G032600 Rw7G032770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1881
AccI GTMKAC 1 cut(s) 84
AccII CGCG 3 cut(s) 174, 504, 536
AclWI GGATC 3 cut(s) 149, 1677, 1939
AcoI YGGCCR 2 cut(s) 223, 531
AcsI RAATTY 6 cut(s) 695, 1109, 1430, 1469, 1506, 1568
AcyI GRCGYC 1 cut(s) 507
AfaI GTAC 3 cut(s) 248, 284, 1255
AfiI CCNNNNNNNGG 5 cut(s) 300, 529, 1159, 1608, 1761
AjnI CCWGG 1 cut(s) 1700
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 1 cut(s) 1958
AlwI GGATC 3 cut(s) 149, 1677, 1939
Ama87I CYCGRG 1 cut(s) 36
AoxI GGCC 4 cut(s) 168, 223, 531, 1240
ApeKI GCWGC 7 cut(s) 69, 288, 320, 1280, 1323, 1708, 1780
ApoI RAATTY 6 cut(s) 695, 1109, 1430, 1469, 1506, 1568
ArsI GACNNNNNNTTYG 6 cut(s) 203, 235, 426, 458, 765, 797
AseI ATTAAT 2 cut(s) 1518, 1725
AspLEI GCGC 1 cut(s) 293
AspS9I GGNCC 4 cut(s) 169, 303, 484, 1241
AsuC2I CCSGG 5 cut(s) 266, 307, 1226, 1244, 1811
AsuHPI GGTGA 3 cut(s) 82, 400, 664
AsuNHI GCTAGC 1 cut(s) 1001
AvaI CYCGRG 1 cut(s) 36
AvaII GGWCC 2 cut(s) 303, 484
BaeGI GKGCMC 2 cut(s) 1165, 1860
BanII GRGCYC 1 cut(s) 192
BauI CACGAG 1 cut(s) 1104
BbsI GAAGAC 6 cut(s) 38, 861, 897, 1077, 1495, 1695
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 7 cut(s) 56, 300, 307, 1267, 1335, 1720, 1792
BceAI ACGGC 4 cut(s) 281, 1116, 1302, 1568
BcgI CGANNNNNNTGC 2 cut(s) 478, 512
BciT130I CCWGG 1 cut(s) 1702
BcnI CCSGG 5 cut(s) 266, 307, 1226, 1244, 1811
BcoDI GTCTC 1 cut(s) 1958
BfaI CTAG 3 cut(s) 726, 1002, 1059
BfmI CTRYAG 1 cut(s) 127
BfoI RGCGCY 1 cut(s) 294
BglII AGATCT 3 cut(s) 827, 1402, 1445
BmcAI AGTACT 1 cut(s) 1255
Bme1390I CCNGG 6 cut(s) 266, 307, 1226, 1244, 1702, 1811
Bme18I GGWCC 2 cut(s) 303, 484
BmeT110I CYCGRG 1 cut(s) 36
BmgT120I GGNCC 4 cut(s) 169, 303, 484, 1241
BmiI GGNNCC 3 cut(s) 354, 549, 1248
BmrFI CCNGG 6 cut(s) 266, 307, 1226, 1244, 1702, 1811
BmsI GCATC 4 cut(s) 1045, 1335, 1426, 1467
BmtI GCTAGC 1 cut(s) 1005
BpiI GAAGAC 6 cut(s) 38, 861, 897, 1077, 1495, 1695
BplI GAGNNNNNCTC 4 cut(s) 72, 104, 179, 211
BpmI CTGGAG 1 cut(s) 1979
BpuEI CTTGAG 2 cut(s) 1254, 1351
BpuMI CCSGG 5 cut(s) 266, 307, 1226, 1244, 1811
Bsa29I ATCGAT 1 cut(s) 468
BsaHI GRCGYC 1 cut(s) 507
BsaJI CCNNGG 6 cut(s) 450, 502, 534, 1701, 1760, 1902
BsaXI ACNNNNNCTCC 2 cut(s) 603, 633
Bsc4I CCNNNNNNNGG 5 cut(s) 300, 529, 1159, 1608, 1761
Bse1I ACTGG 3 cut(s) 244, 1493, 1745
Bse3DI GCAATG 4 cut(s) 64, 1298, 1524, 1799
BseBI CCWGG 1 cut(s) 1702
BseCI ATCGAT 1 cut(s) 468
BseDI CCNNGG 6 cut(s) 450, 502, 534, 1701, 1760, 1902
BseGI GGATG 5 cut(s) 421, 1621, 1770, 1912, 1978
BseLI CCNNNNNNNGG 5 cut(s) 300, 529, 1159, 1608, 1761
BseMI GCAATG 4 cut(s) 64, 1298, 1524, 1799
BseMII CTCAG 4 cut(s) 91, 389, 1629, 1880
BseNI ACTGG 3 cut(s) 244, 1493, 1745
BseRI GAGGAG 5 cut(s) 140, 1092, 1577, 1655, 1976
BseSI GKGCMC 2 cut(s) 1165, 1860
BseX3I CGGCCG 1 cut(s) 531
BseXI GCAGC 7 cut(s) 56, 300, 307, 1267, 1335, 1720, 1792
Bsh1236I CGCG 3 cut(s) 174, 504, 536
Bsh1285I CGRYCG 1 cut(s) 534
BshFI GGCC 4 cut(s) 170, 225, 533, 1242
BshVI ATCGAT 1 cut(s) 468
BsiEI CGRYCG 1 cut(s) 534
BsiHKAI GWGCWC 1 cut(s) 192
BsiHKCI CYCGRG 1 cut(s) 36
BsiSI CCGG 7 cut(s) 265, 306, 356, 367, 1226, 1244, 1811
BslFI GGGAC 1 cut(s) 767
BslI CCNNNNNNNGG 5 cut(s) 300, 529, 1159, 1608, 1761
BsmAI GTCTC 1 cut(s) 1958
BsmFI GGGAC 1 cut(s) 767
BsmI GAATGC 1 cut(s) 1339
BsnI GGCC 4 cut(s) 170, 225, 533, 1242
BsoBI CYCGRG 1 cut(s) 36
Bsp1286I GDGCHC 3 cut(s) 192, 1165, 1860
Bsp143I GATC 8 cut(s) 141, 469, 827, 1348, 1402, 1445, 1669, 1931
BspANI GGCC 4 cut(s) 170, 225, 533, 1242
BspCNI CTCAG 4 cut(s) 90, 390, 1630, 1879
BspDI ATCGAT 1 cut(s) 468
BspFNI CGCG 3 cut(s) 174, 504, 536
BspHI TCATGA 1 cut(s) 658
BspLI GGNNCC 3 cut(s) 354, 549, 1248
BspOI GCTAGC 1 cut(s) 1005
BspPI GGATC 3 cut(s) 149, 1677, 1939
BspQI GCTCTTC 1 cut(s) 561
BsrDI GCAATG 4 cut(s) 64, 1298, 1524, 1799
BsrI ACTGG 3 cut(s) 244, 1493, 1745
BssECI CCNNGG 6 cut(s) 450, 502, 534, 1701, 1760, 1902
BssMI GATC 8 cut(s) 141, 469, 827, 1348, 1402, 1445, 1669, 1931
BssNI GRCGYC 1 cut(s) 507
BssSI CACGAG 1 cut(s) 1104
BssT1I CCWWGG 2 cut(s) 1760, 1902
Bst2BI CACGAG 1 cut(s) 1104
Bst2UI CCWGG 1 cut(s) 1702
Bst4CI ACNGT 6 cut(s) 385, 860, 896, 1395, 1874, 1969
Bst6I CTCTTC 3 cut(s) 561, 1436, 1793
BstACI GRCGYC 1 cut(s) 507
BstAPI GCANNNNNTGC 2 cut(s) 162, 1280
BstC8I GCNNGC 5 cut(s) 172, 746, 750, 1003, 1735
BstDEI CTNAG 4 cut(s) 77, 398, 1638, 1866
BstDSI CCRYGG 2 cut(s) 502, 534
BstEII GGTNACC 1 cut(s) 1716
BstF5I GGATG 5 cut(s) 421, 1621, 1770, 1912, 1978
BstFNI CGCG 3 cut(s) 174, 504, 536
BstH2I RGCGCY 1 cut(s) 294
BstHHI GCGC 1 cut(s) 293
BstKTI GATC 8 cut(s) 144, 472, 830, 1351, 1405, 1448, 1672, 1934
BstMAI GTCTC 1 cut(s) 1958
BstMBI GATC 8 cut(s) 141, 469, 827, 1348, 1402, 1445, 1669, 1931
BstMCI CGRYCG 1 cut(s) 534
BstNI CCWGG 1 cut(s) 1702
BstPI GGTNACC 1 cut(s) 1716
BstSCI CCNGG 6 cut(s) 264, 305, 1224, 1242, 1700, 1809
BstSFI CTRYAG 1 cut(s) 127
BstSLI GKGCMC 2 cut(s) 1165, 1860
BstUI CGCG 3 cut(s) 174, 504, 536
BstV1I GCAGC 7 cut(s) 56, 300, 307, 1267, 1335, 1720, 1792
BstV2I GAAGAC 6 cut(s) 38, 861, 897, 1077, 1495, 1695
BstX2I RGATCY 4 cut(s) 827, 1402, 1445, 1931
BstXI CCANNNNNNTGG 1 cut(s) 1844
BstYI RGATCY 4 cut(s) 827, 1402, 1445, 1931
BstZI CGGCCG 1 cut(s) 531
Bsu15I ATCGAT 1 cut(s) 468
BsuRI GGCC 4 cut(s) 170, 225, 533, 1242
BsuTUI ATCGAT 1 cut(s) 468
BtgI CCRYGG 2 cut(s) 502, 534
BtsCI GGATG 5 cut(s) 421, 1621, 1770, 1912, 1978
BtsI GCAGTG 2 cut(s) 22, 226
BtsIMutI CAGTG 4 cut(s) 22, 226, 1585, 1752
Cac8I GCNNGC 5 cut(s) 172, 746, 750, 1003, 1735
CciI TCATGA 1 cut(s) 658
CfoI GCGC 1 cut(s) 293
Cfr13I GGNCC 4 cut(s) 169, 303, 484, 1241
Cfr42I CCGCGG 2 cut(s) 505, 537
ClaI ATCGAT 1 cut(s) 468
CseI GACGC 2 cut(s) 163, 496
Csp6I GTAC 3 cut(s) 247, 283, 1254
CspCI CAANNNNNGTGG 2 cut(s) 251, 286
CviAII CATG 4 cut(s) 659, 1221, 1574, 1730
CviQI GTAC 3 cut(s) 247, 283, 1254
DdeI CTNAG 4 cut(s) 77, 398, 1638, 1866
DpnI GATC 8 cut(s) 143, 471, 829, 1350, 1404, 1447, 1671, 1933
DpnII GATC 8 cut(s) 141, 469, 827, 1348, 1402, 1445, 1669, 1931
EaeI YGGCCR 2 cut(s) 223, 531
EagI CGGCCG 1 cut(s) 531
Eam1104I CTCTTC 3 cut(s) 561, 1436, 1793
EarI CTCTTC 3 cut(s) 561, 1436, 1793
EciI GGCGGA 3 cut(s) 154, 554, 560
Ecl136II GAGCTC 1 cut(s) 190
EclXI CGGCCG 1 cut(s) 531
Eco130I CCWWGG 2 cut(s) 1760, 1902
Eco24I GRGCYC 1 cut(s) 192
Eco47I GGWCC 2 cut(s) 303, 484
Eco52I CGGCCG 1 cut(s) 531
Eco53kI GAGCTC 1 cut(s) 190
Eco88I CYCGRG 1 cut(s) 36
Eco91I GGTNACC 1 cut(s) 1716
EcoICRI GAGCTC 1 cut(s) 190
EcoO65I GGTNACC 1 cut(s) 1716
EcoRI GAATTC 1 cut(s) 695
EcoRII CCWGG 1 cut(s) 1700
EcoT14I CCWWGG 2 cut(s) 1760, 1902
EcoT38I GRGCYC 1 cut(s) 192
ErhI CCWWGG 2 cut(s) 1760, 1902
FaeI CATG 4 cut(s) 662, 1224, 1577, 1733
FaqI GGGAC 1 cut(s) 767
FatI CATG 4 cut(s) 658, 1220, 1573, 1729
FauI CCCGC 1 cut(s) 179
FauNDI CATATG 1 cut(s) 1204
FblI GTMKAC 1 cut(s) 84
FokI GGATG 4 cut(s) 428, 1628, 1777, 1919
FriOI GRGCYC 1 cut(s) 192
FspBI CTAG 3 cut(s) 726, 1002, 1059
GlaI GCGC 1 cut(s) 292
GsuI CTGGAG 1 cut(s) 1979
HaeII RGCGCY 1 cut(s) 294
HaeIII GGCC 4 cut(s) 170, 225, 533, 1242
HapII CCGG 7 cut(s) 265, 306, 356, 367, 1226, 1244, 1811
HgaI GACGC 2 cut(s) 163, 496
HhaI GCGC 1 cut(s) 293
Hin1I GRCGYC 1 cut(s) 507
Hin1II CATG 4 cut(s) 662, 1224, 1577, 1733
Hin6I GCGC 1 cut(s) 291
HinP1I GCGC 1 cut(s) 291
HincII GTYRAC 2 cut(s) 85, 1912
HindII GTYRAC 2 cut(s) 85, 1912
HindIII AAGCTT 2 cut(s) 113, 1595
HpaI GTTAAC 1 cut(s) 1912
HpaII CCGG 7 cut(s) 265, 306, 356, 367, 1226, 1244, 1811
HphI GGTGA 3 cut(s) 82, 400, 664
Hpy99I CGWCG 8 cut(s) 10, 13, 179, 220, 512, 515, 1323, 1931
HpyAV CCTTC 6 cut(s) 586, 778, 938, 1478, 1606, 1846
HpyCH4III ACNGT 6 cut(s) 385, 860, 896, 1395, 1874, 1969
HpyCH4IV ACGT 1 cut(s) 648
HpyCH4V TGCA 7 cut(s) 156, 788, 1202, 1385, 1417, 1658, 1792
HpyF3I CTNAG 4 cut(s) 77, 398, 1638, 1866
HpySE526I ACGT 1 cut(s) 648
Hsp92I GRCGYC 1 cut(s) 507
Hsp92II CATG 4 cut(s) 662, 1224, 1577, 1733
HspAI GCGC 1 cut(s) 291
KspAI GTTAAC 1 cut(s) 1912
KspI CCGCGG 2 cut(s) 505, 537
Kzo9I GATC 8 cut(s) 141, 469, 827, 1348, 1402, 1445, 1669, 1931
LguI GCTCTTC 1 cut(s) 561
LmnI GCTCC 9 cut(s) 200, 352, 454, 547, 718, 1105, 1501, 1642, 1705
Lsp1109I GCAGC 7 cut(s) 56, 300, 307, 1267, 1335, 1720, 1792
LweI GCATC 4 cut(s) 1045, 1335, 1426, 1467
MaeI CTAG 3 cut(s) 726, 1002, 1059
MaeII ACGT 1 cut(s) 648
MaeIII GTNAC 2 cut(s) 1716, 1922
MalI GATC 8 cut(s) 143, 471, 829, 1350, 1404, 1447, 1671, 1933
MboI GATC 8 cut(s) 141, 469, 827, 1348, 1402, 1445, 1669, 1931
MfeI CAATTG 2 cut(s) 1190, 1412
MflI RGATCY 4 cut(s) 827, 1402, 1445, 1931
MhlI GDGCHC 3 cut(s) 192, 1165, 1860
MlyI GAGTC 8 cut(s) 28, 90, 206, 267, 450, 453, 1301, 1930
MseI TTAA 9 cut(s) 804, 824, 1137, 1355, 1455, 1518, 1725, 1911, 1950
MslI CAYNNNNRTG 2 cut(s) 1422, 1578
MspA1I CMGCKG 3 cut(s) 504, 536, 752
MspI CCGG 7 cut(s) 265, 306, 356, 367, 1226, 1244, 1811
MspR9I CCNGG 6 cut(s) 266, 307, 1226, 1244, 1702, 1811
MunI CAATTG 2 cut(s) 1190, 1412
Mva1269I GAATGC 1 cut(s) 1339
MvaI CCWGG 1 cut(s) 1702
MvnI CGCG 3 cut(s) 174, 504, 536
NciI CCSGG 5 cut(s) 266, 307, 1226, 1244, 1811
NdeI CATATG 1 cut(s) 1204
NdeII GATC 8 cut(s) 141, 469, 827, 1348, 1402, 1445, 1669, 1931
NheI GCTAGC 1 cut(s) 1001
NlaIII CATG 4 cut(s) 662, 1224, 1577, 1733
NlaIV GGNNCC 3 cut(s) 354, 549, 1248
NmeAIII GCCGAG 1 cut(s) 579
NmuCI GTSAC 1 cut(s) 1922
PagI TCATGA 1 cut(s) 658
PciSI GCTCTTC 1 cut(s) 561
PcsI WCGNNNNNNNCGW 2 cut(s) 183, 504
PctI GAATGC 1 cut(s) 1339
PfeI GAWTC 7 cut(s) 179, 275, 372, 465, 655, 815, 1532
PleI GAGTC 8 cut(s) 28, 89, 206, 266, 449, 453, 1301, 1929
PpsI GAGTC 8 cut(s) 28, 89, 206, 266, 449, 453, 1301, 1929
PshBI ATTAAT 2 cut(s) 1518, 1725
PsiI TTATAA 1 cut(s) 1881
Psp124BI GAGCTC 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 1700
PspEI GGTNACC 1 cut(s) 1716
PspGI CCWGG 1 cut(s) 1700
PspN4I GGNNCC 3 cut(s) 354, 549, 1248
PspPI GGNCC 4 cut(s) 169, 303, 484, 1241
PsuI RGATCY 4 cut(s) 827, 1402, 1445, 1931
PvuII CAGCTG 1 cut(s) 752
RsaI GTAC 3 cut(s) 248, 284, 1255
RsaNI GTAC 3 cut(s) 247, 283, 1254
RseI CAYNNNNRTG 2 cut(s) 1422, 1578
SacI GAGCTC 1 cut(s) 192
SacII CCGCGG 2 cut(s) 505, 537
SalI GTCGAC 1 cut(s) 83
SapI GCTCTTC 1 cut(s) 561
SaqAI TTAA 9 cut(s) 804, 824, 1137, 1355, 1455, 1518, 1725, 1911, 1950
Sau3AI GATC 8 cut(s) 141, 469, 827, 1348, 1402, 1445, 1669, 1931
Sau96I GGNCC 4 cut(s) 169, 303, 484, 1241
ScaI AGTACT 1 cut(s) 1255
SchI GAGTC 8 cut(s) 28, 90, 206, 267, 450, 453, 1301, 1930
ScrFI CCNGG 6 cut(s) 266, 307, 1226, 1244, 1702, 1811
SduI GDGCHC 3 cut(s) 192, 1165, 1860
SfaNI GCATC 4 cut(s) 1045, 1335, 1426, 1467
SfcI CTRYAG 1 cut(s) 127
Sfr303I CCGCGG 2 cut(s) 505, 537
SgrBI CCGCGG 2 cut(s) 505, 537
SinI GGWCC 2 cut(s) 303, 484
SmiMI CAYNNNNRTG 2 cut(s) 1422, 1578
SmlI CTYRAG 2 cut(s) 1269, 1366
SmoI CTYRAG 2 cut(s) 1269, 1366
SspMI CTAG 3 cut(s) 726, 1002, 1059
SstI GAGCTC 1 cut(s) 192
StyD4I CCNGG 6 cut(s) 264, 305, 1224, 1242, 1700, 1809
StyI CCWWGG 2 cut(s) 1760, 1902
TaaI ACNGT 6 cut(s) 385, 860, 896, 1395, 1874, 1969
TaiI ACGT 1 cut(s) 651
TaqI TCGA 9 cut(s) 84, 177, 375, 468, 513, 686, 818, 1122, 1560
TaqII GACCGA 1 cut(s) 440
TatI WGTACW 2 cut(s) 246, 1253
TauI GCSGC 9 cut(s) 243, 256, 296, 449, 507, 536, 539, 553, 581
TfiI GAWTC 7 cut(s) 179, 275, 372, 465, 655, 815, 1532
Tru1I TTAA 9 cut(s) 804, 824, 1137, 1355, 1455, 1518, 1725, 1911, 1950
Tru9I TTAA 9 cut(s) 804, 824, 1137, 1355, 1455, 1518, 1725, 1911, 1950
TscAI CASTG 4 cut(s) 22, 233, 1585, 1752
TseFI GTSAC 1 cut(s) 1922
TseI GCWGC 7 cut(s) 69, 288, 320, 1280, 1323, 1708, 1780
Tsp45I GTSAC 1 cut(s) 1922
TspDTI ATGAA 5 cut(s) 647, 1074, 1209, 1562, 1790
TspGWI ACGGA 3 cut(s) 71, 624, 1944
TspRI CASTG 4 cut(s) 22, 233, 1585, 1752
VpaK11BI GGWCC 2 cut(s) 303, 484
VspI ATTAAT 2 cut(s) 1518, 1725
XapI RAATTY 6 cut(s) 695, 1109, 1430, 1469, 1506, 1568
XcmI CCANNNNNNNNNTGG 1 cut(s) 756
XmiI GTMKAC 1 cut(s) 84
XspI CTAG 3 cut(s) 726, 1002, 1059
ZrmI AGTACT 1 cut(s) 1255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.