gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 3 cut(s) | 53, 180, 215 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 161 |
| AflIII | ACRYGT | 1 cut(s) | 34 |
| AgsI | TTSAA | 3 cut(s) | 58, 179, 441 |
| AjiI | CACGTC | 1 cut(s) | 127 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 372, 404 |
| AoxI | GGCC | 1 cut(s) | 141 |
| ApoI | RAATTY | 3 cut(s) | 53, 180, 215 |
| AspS9I | GGNCC | 1 cut(s) | 142 |
| BccI | CCATC | 1 cut(s) | 280 |
| BfaI | CTAG | 2 cut(s) | 339, 347 |
| BfmI | CTRYAG | 2 cut(s) | 185, 192 |
| BglII | AGATCT | 1 cut(s) | 295 |
| BmgBI | CACGTC | 1 cut(s) | 127 |
| BmgT120I | GGNCC | 1 cut(s) | 142 |
| BpuEI | CTTGAG | 1 cut(s) | 139 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 161 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 161 |
| BseMII | CTCAG | 2 cut(s) | 39, 129 |
| BshFI | GGCC | 1 cut(s) | 143 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 161 |
| BsmI | GAATGC | 1 cut(s) | 247 |
| BsnI | GGCC | 1 cut(s) | 143 |
| Bsp143I | GATC | 1 cut(s) | 295 |
| BspANI | GGCC | 1 cut(s) | 143 |
| BspCNI | CTCAG | 2 cut(s) | 40, 130 |
| BspHI | TCATGA | 1 cut(s) | 367 |
| BspMAI | CTGCAG | 1 cut(s) | 189 |
| BssMI | GATC | 1 cut(s) | 295 |
| Bst6I | CTCTTC | 1 cut(s) | 153 |
| BstC8I | GCNNGC | 1 cut(s) | 189 |
| BstDEI | CTNAG | 3 cut(s) | 48, 138, 353 |
| BstKTI | GATC | 1 cut(s) | 298 |
| BstMBI | GATC | 1 cut(s) | 295 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 149, 197 |
| BstSFI | CTRYAG | 2 cut(s) | 185, 192 |
| BstX2I | RGATCY | 1 cut(s) | 295 |
| BstYI | RGATCY | 1 cut(s) | 295 |
| BsuRI | GGCC | 1 cut(s) | 143 |
| BtrI | CACGTC | 1 cut(s) | 127 |
| Cac8I | GCNNGC | 1 cut(s) | 189 |
| CciI | TCATGA | 1 cut(s) | 367 |
| Cfr13I | GGNCC | 1 cut(s) | 142 |
| CviAII | CATG | 3 cut(s) | 146, 201, 368 |
| CviJI | RGCY | 6 cut(s) | 143, 191, 290, 338, 405, 417 |
| CviKI_1 | RGCY | 6 cut(s) | 143, 191, 290, 338, 405, 417 |
| DdeI | CTNAG | 3 cut(s) | 48, 138, 353 |
| DpnI | GATC | 1 cut(s) | 297 |
| DpnII | GATC | 1 cut(s) | 295 |
| DraI | TTTAAA | 1 cut(s) | 73 |
| Eam1104I | CTCTTC | 1 cut(s) | 153 |
| EarI | CTCTTC | 1 cut(s) | 153 |
| FaeI | CATG | 3 cut(s) | 149, 204, 371 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 372, 404 |
| FatI | CATG | 3 cut(s) | 145, 200, 367 |
| FspBI | CTAG | 2 cut(s) | 339, 347 |
| HaeIII | GGCC | 1 cut(s) | 143 |
| Hin1II | CATG | 3 cut(s) | 149, 204, 371 |
| HinfI | GANTC | 3 cut(s) | 4, 121, 205 |
| Hpy188I | TCNGA | 3 cut(s) | 139, 240, 396 |
| Hpy188III | TCNNGA | 3 cut(s) | 103, 311, 368 |
| HpyAV | CCTTC | 1 cut(s) | 447 |
| HpyCH4IV | ACGT | 2 cut(s) | 36, 126 |
| HpyCH4V | TGCA | 2 cut(s) | 187, 225 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 149, 197 |
| HpyF3I | CTNAG | 3 cut(s) | 48, 138, 353 |
| HpySE526I | ACGT | 2 cut(s) | 36, 126 |
| Hsp92II | CATG | 3 cut(s) | 149, 204, 371 |
| Kzo9I | GATC | 1 cut(s) | 295 |
| LpnPI | CCDG | 7 cut(s) | 60, 168, 173, 186, 211, 296, 434 |
| MaeI | CTAG | 2 cut(s) | 339, 347 |
| MaeII | ACGT | 2 cut(s) | 36, 126 |
| MaeIII | GTNAC | 2 cut(s) | 122, 341 |
| MalI | GATC | 1 cut(s) | 297 |
| MboI | GATC | 1 cut(s) | 295 |
| MboII | GAAGA | 4 cut(s) | 91, 100, 170, 392 |
| MflI | RGATCY | 1 cut(s) | 295 |
| MluCI | AATT | 5 cut(s) | 53, 180, 215, 431, 442 |
| MlyI | GAGTC | 2 cut(s) | 130, 199 |
| MmeI | TCCRAC | 1 cut(s) | 59 |
| MnlI | CCTC | 2 cut(s) | 133, 154 |
| MseI | TTAA | 1 cut(s) | 72 |
| Mva1269I | GAATGC | 1 cut(s) | 247 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 149, 197 |
| NdeII | GATC | 1 cut(s) | 295 |
| NlaIII | CATG | 3 cut(s) | 149, 204, 371 |
| NmuCI | GTSAC | 1 cut(s) | 122 |
| PagI | TCATGA | 1 cut(s) | 367 |
| PctI | GAATGC | 1 cut(s) | 247 |
| PfeI | GAWTC | 1 cut(s) | 4 |
| PleI | GAGTC | 2 cut(s) | 129, 199 |
| PpsI | GAGTC | 2 cut(s) | 129, 199 |
| PspPI | GGNCC | 1 cut(s) | 142 |
| PstI | CTGCAG | 1 cut(s) | 189 |
| PsuI | RGATCY | 1 cut(s) | 295 |
| SaqAI | TTAA | 1 cut(s) | 72 |
| Sau3AI | GATC | 1 cut(s) | 295 |
| Sau96I | GGNCC | 1 cut(s) | 142 |
| SchI | GAGTC | 2 cut(s) | 130, 199 |
| SetI | ASST | 4 cut(s) | 39, 49, 129, 348 |
| SfcI | CTRYAG | 2 cut(s) | 185, 192 |
| SmlI | CTYRAG | 1 cut(s) | 118 |
| SmoI | CTYRAG | 1 cut(s) | 118 |
| Sse9I | AATT | 5 cut(s) | 53, 180, 215, 431, 442 |
| SspMI | CTAG | 2 cut(s) | 339, 347 |
| TaiI | ACGT | 2 cut(s) | 39, 129 |
| TasI | AATT | 5 cut(s) | 53, 180, 215, 431, 442 |
| TfiI | GAWTC | 1 cut(s) | 4 |
| Tru1I | TTAA | 1 cut(s) | 72 |
| Tru9I | TTAA | 1 cut(s) | 72 |
| TseFI | GTSAC | 1 cut(s) | 122 |
| Tsp45I | GTSAC | 1 cut(s) | 122 |
| TspDTI | ATGAA | 6 cut(s) | 17, 162, 228, 264, 356, 393 |
| XapI | RAATTY | 3 cut(s) | 53, 180, 215 |
| XspI | CTAG | 2 cut(s) | 339, 347 |