Prupe.2G191700_v2.0.a1

gag-polypeptide of LTR copia-type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000258
Physical Location & Seq
Reverse (-)
23111947 .. 23113540
1594 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G191700.1

Sequence Viewer

Length: 633 bp
ATGTCTAATTCAACAGTGACTGGTCTTGCTCCTCAAGAACTTGTTCCCATTGACCCCGTTCGTCTTGATGGGAAGAACTACACGATCTGGGCACGGCGAATGGAGTTTTTCCTCAAGGAATTAAAAGTTGAATATGTACTCTATGAGCCATGCCCTGGCATTATGCTAGGATCTGAAGCAACTACTGAAGAAATTGCTGAATCGAAGGCTGCTGAAGAGAAATGGATCAAGGATGACTTTATGTGCCTTCGCACCATCTTGAACTATCTATGTGATGATCTCCTCCATCGTTACGCAAAGAGAAAGAAAACTACAACTGCTAAACAACTGTGGGACGATCTAAAATTAATGTTCGGAACAAAGAGATCTCTGGTTAGAAAGTACATGGAATTTCAGATGGTTGATGAGAAGACAGTTGTGGAGCAAGTTCAAGAATTCAATCGCATTTTCGATGACGTTGTGGCTTCTGGAATGACGTTGAGTGAGAAATTTCATGTCTCTGCCATCTTAGCCAAGCTCCCTGCCTCTTGGAAGTACTCAAACATCAAGTCATTGACGGGGAAGGAGAAGCCGTTGACTTTAGAAGTGTTGATGGATAGTTTGAGGGTTGAAGAAGAGTACGTTTGCCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DEK_C PC4 Retrotran_gag_2

Protein Analysis

211

Amino Acids

24.37

Weight (kDa)

5.62

Isoelectric Point (pI)

46.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00980
fragaria_vesca FvH4_1g25682 FvH4_2g13961 FvH4_2g20162 FvH4_2g24753 FvH4_3g12191 FvH4_3g12632 FvH4_3g16171 FvH4_4g05871 FvH4_4g05873 FvH4_4g10121 FvH4_4g15488 FvH4_4g23911 FvH4_4g27782 FvH4_5g08912 FvH4_5g23001 FvH4_5g24552 FvH4_5g32801 FvH4_5g32802 FvH4_6g05093 FvH4_6g19722 FvH4_6g20391 FvH4_6g33792 FvH4_7g01381 FvH4_7g16761 FvH4_7g16761 FvH4_7g16761
malus_domestica MD01G1082500.v1.1 MD15G1436400.v1.1
prunus_persica Prupe.2G021400_v2.0.a1 Prupe.2G052400_v2.0.a1 Prupe.2G065000_v2.0.a1 Prupe.2G187700_v2.0.a1 Prupe.2G187800_v2.0.a1 Prupe.2G189900_v2.0.a1 Prupe.2G191300_v2.0.a1 Prupe.2G191700_v2.0.a1 Prupe.4G265600_v2.0.a1 Prupe.7G014200_v2.0.a1 Prupe.7G039000_v2.0.a1
pyrus_communis pycom01g05590 pycom01g05910 pycom02g12230 pycom02g25840 pycom03g15580 pycom04g04480 pycom05g09230 pycom05g23350 pycom05g23360 pycom07g08380 pycom09g01980 pycom09g01990 pycom11g18190 pycom11g18200 pycom11g21580 pycom13g04160 pycom15g25800 pycom16g16210 pycom16g17230 pycom16g24560 pycom16g25700 pycom17g11020
rosa_chinensis RchiOBHm_Chr1g0359981 RchiOBHm_Chr2g0151961 RchiOBHm_Chr2g0171331 RchiOBHm_Chr5g0081471 RchiOBHm_Chr6g0283031 RchiOBHm_Chr7g0197111 RchiOBHm_Chr7g0222601
rosa_laevigata RLG00000027843 RLG00000027845 RLG00000030065
rosa_multiflora Rmu_sc0000381.1_g000031 Rmu_sc0001179.1_g000035 Rmu_sc0001616.1_g000046 Rmu_sc0001851.1_g000032 Rmu_sc0002152.1_g000013 Rmu_sc0004031.1_g000015 Rmu_sc0004645.1_g000003 Rmu_sc0007393.1_g000001 Rmu_sc0008949.1_g000003 Rmu_sc0009799.1_g000011 Rmu_sc0011614.1_g000001 Rmu_sc0011699.1_g000009 Rmu_sc0019280.1_g000001 Rmu_sc0023984.1_g000001 Rmu_ssc0000050.1_g000036
rosa_roxburghii Rroxscaffold_1G00022650 Rroxscaffold_1G00033480 Rroxscaffold_3G00270250 Rroxscaffold_4G00296600 Rroxscaffold_4G00296760 Rroxscaffold_6G00409840
rosa_rugosa Rorug01G0273800 Rorug01G0273900 Rorug01G0274000
rosa_samantha Rh1AG287300 Rh1AG288100 Rh1BG253000 Rh1BG253500 Rh1BG399800 Rh1CG270400 Rh1CG271000 Rh1DG282000 Rh1DG282500 Rh4DG126500 Rh5DG194600 Rh5DG461100
rosa_wichuraiana Rw0G009130 Rw1G002590 Rw1G008490 Rw1G012210 Rw1G014290 Rw1G014490 Rw1G025510 Rw2G025840 Rw2G026170 Rw2G036510 Rw3G003050 Rw4G009270 Rw5G002350 Rw5G013930 Rw5G019500 Rw5G025890 Rw5G029960 Rw5G032360 Rw6G009890 Rw6G015670 Rw6G015860 Rw7G010030 Rw7G032600 Rw7G032770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 155
AclWI GGATC 2 cut(s) 178, 233
AcsI RAATTY 3 cut(s) 389, 434, 488
AcuI CTGAAG 3 cut(s) 195, 207, 234
AfaI GTAC 4 cut(s) 138, 383, 536, 620
AfiI CCNNNNNNNGG 1 cut(s) 155
AgsI TTSAA 6 cut(s) 12, 131, 262, 431, 439, 611
AjnI CCWGG 1 cut(s) 154
AluBI AGCT 1 cut(s) 517
AluI AGCT 1 cut(s) 517
Alw26I GTCTC 1 cut(s) 502
AlwI GGATC 2 cut(s) 178, 233
AlwNI CAGNNNCTG 1 cut(s) 20
ApeKI GCWGC 1 cut(s) 209
ApoI RAATTY 3 cut(s) 389, 434, 488
ArsI GACNNNNNNTTYG 2 cut(s) 533, 565
AseI ATTAAT 1 cut(s) 347
Asp700I GAANNNNTTC 1 cut(s) 42
BaeGI GKGCMC 1 cut(s) 94
BbsI GAAGAC 1 cut(s) 416
BbvI GCAGC 1 cut(s) 196
BccI CCATC 6 cut(s) 62, 263, 294, 391, 512, 586
BceAI ACGGC 2 cut(s) 110, 556
BciT130I CCWGG 1 cut(s) 156
BcoDI GTCTC 1 cut(s) 502
BfaI CTAG 1 cut(s) 167
BglII AGATCT 1 cut(s) 365
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
BmcAI AGTACT 1 cut(s) 536
Bme1390I CCNGG 1 cut(s) 156
BmrFI CCNGG 1 cut(s) 156
BpiI GAAGAC 1 cut(s) 416
BpuEI CTTGAG 2 cut(s) 18, 98
BsaJI CCNNGG 1 cut(s) 154
BsaXI ACNNNNNCTCC 2 cut(s) 557, 587
Bsc4I CCNNNNNNNGG 1 cut(s) 155
Bse1I ACTGG 1 cut(s) 25
BseBI CCWGG 1 cut(s) 156
BseDI CCNNGG 1 cut(s) 154
BseGI GGATG 1 cut(s) 238
BseLI CCNNNNNNNGG 1 cut(s) 155
BseNI ACTGG 1 cut(s) 25
BseRI GAGGAG 2 cut(s) 21, 272
BseSI GKGCMC 1 cut(s) 94
BseXI GCAGC 1 cut(s) 196
BslFI GGGAC 1 cut(s) 347
BslI CCNNNNNNNGG 1 cut(s) 155
BsmAI GTCTC 1 cut(s) 502
BsmFI GGGAC 1 cut(s) 347
Bsp1286I GDGCHC 1 cut(s) 94
Bsp143I GATC 6 cut(s) 84, 170, 225, 277, 337, 365
BspPI GGATC 2 cut(s) 178, 233
BsrI ACTGG 1 cut(s) 25
BssECI CCNNGG 1 cut(s) 154
BssMI GATC 6 cut(s) 84, 170, 225, 277, 337, 365
Bst2UI CCWGG 1 cut(s) 156
Bst4CI ACNGT 3 cut(s) 16, 330, 415
Bst6I CTCTTC 2 cut(s) 210, 609
BstDEI CTNAG 1 cut(s) 508
BstF5I GGATG 1 cut(s) 238
BstKTI GATC 6 cut(s) 87, 173, 228, 280, 340, 368
BstMAI GTCTC 1 cut(s) 502
BstMBI GATC 6 cut(s) 84, 170, 225, 277, 337, 365
BstMWI GCNNNNNNNGC 1 cut(s) 509
BstNI CCWGG 1 cut(s) 156
BstSCI CCNGG 1 cut(s) 154
BstSLI GKGCMC 1 cut(s) 94
BstV1I GCAGC 1 cut(s) 196
BstV2I GAAGAC 1 cut(s) 416
BstX2I RGATCY 2 cut(s) 170, 365
BstYI RGATCY 2 cut(s) 170, 365
BtsCI GGATG 1 cut(s) 238
BtsIMutI CAGTG 1 cut(s) 21
CaiI CAGNNNCTG 1 cut(s) 20
Csp6I GTAC 4 cut(s) 137, 382, 535, 619
CviAII CATG 3 cut(s) 150, 385, 494
CviJI RGCY 6 cut(s) 148, 209, 464, 512, 517, 571
CviKI_1 RGCY 6 cut(s) 148, 209, 464, 512, 517, 571
CviQI GTAC 4 cut(s) 137, 382, 535, 619
DdeI CTNAG 1 cut(s) 508
DpnI GATC 6 cut(s) 86, 172, 227, 279, 339, 367
DpnII GATC 6 cut(s) 84, 170, 225, 277, 337, 365
Eam1104I CTCTTC 2 cut(s) 210, 609
EarI CTCTTC 2 cut(s) 210, 609
Eco57I CTGAAG 3 cut(s) 195, 207, 234
EcoRI GAATTC 1 cut(s) 434
EcoRII CCWGG 1 cut(s) 154
FaeI CATG 3 cut(s) 153, 388, 497
FaiI YATR 9 cut(s) 135, 144, 151, 164, 242, 271, 386, 495, 631
FalI AAGNNNNNCTT 2 cut(s) 221, 253
FaqI GGGAC 1 cut(s) 347
FatI CATG 3 cut(s) 149, 384, 493
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 1 cut(s) 245
Fsp4HI GCNGC 1 cut(s) 210
FspBI CTAG 1 cut(s) 167
GluI GCNGC 1 cut(s) 210
Hin1II CATG 3 cut(s) 153, 388, 497
HincII GTYRAC 1 cut(s) 576
HindII GTYRAC 1 cut(s) 576
HinfI GANTC 1 cut(s) 200
Hpy166II GTNNAC 1 cut(s) 576
Hpy188I TCNGA 3 cut(s) 175, 356, 396
Hpy188III TCNNGA 5 cut(s) 35, 65, 259, 431, 468
Hpy8I GTNNAC 1 cut(s) 576
HpyAV CCTTC 3 cut(s) 199, 257, 556
HpyCH4III ACNGT 3 cut(s) 16, 330, 415
HpyCH4IV ACGT 3 cut(s) 456, 476, 621
HpyF10VI GCNNNNNNNGC 1 cut(s) 509
HpyF3I CTNAG 1 cut(s) 508
HpySE526I ACGT 3 cut(s) 456, 476, 621
Hsp92II CATG 3 cut(s) 153, 388, 497
Kzo9I GATC 6 cut(s) 84, 170, 225, 277, 337, 365
LmnI GCTCC 3 cut(s) 34, 421, 522
LpnPI CCDG 7 cut(s) 6, 73, 141, 168, 356, 453, 534
Lsp1109I GCAGC 1 cut(s) 196
MaeI CTAG 1 cut(s) 167
MaeII ACGT 3 cut(s) 456, 476, 621
MaeIII GTNAC 2 cut(s) 16, 290
MalI GATC 6 cut(s) 86, 172, 227, 279, 339, 367
MboI GATC 6 cut(s) 84, 170, 225, 277, 337, 365
MboII GAAGA 6 cut(s) 85, 200, 227, 421, 623, 626
MflI RGATCY 2 cut(s) 170, 365
MhlI GDGCHC 1 cut(s) 94
MluCI AATT 7 cut(s) 7, 119, 192, 344, 389, 434, 488
MnlI CCTC 5 cut(s) 42, 122, 293, 535, 597
MroXI GAANNNNTTC 1 cut(s) 42
MseI TTAA 2 cut(s) 122, 347
MspR9I CCNGG 1 cut(s) 156
MvaI CCWGG 1 cut(s) 156
MwoI GCNNNNNNNGC 1 cut(s) 509
NdeII GATC 6 cut(s) 84, 170, 225, 277, 337, 365
NlaIII CATG 3 cut(s) 153, 388, 497
NmuCI GTSAC 1 cut(s) 16
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 1 cut(s) 200
PflMI CCANNNNNTGG 1 cut(s) 155
PkrI GCNGC 1 cut(s) 211
PshBI ATTAAT 1 cut(s) 347
Psp6I CCWGG 1 cut(s) 154
PspGI CCWGG 1 cut(s) 154
PstNI CAGNNNCTG 1 cut(s) 20
PsuI RGATCY 2 cut(s) 170, 365
RsaI GTAC 4 cut(s) 138, 383, 536, 620
RsaNI GTAC 4 cut(s) 137, 382, 535, 619
SaqAI TTAA 2 cut(s) 122, 347
SatI GCNGC 1 cut(s) 210
Sau3AI GATC 6 cut(s) 84, 170, 225, 277, 337, 365
ScaI AGTACT 1 cut(s) 536
ScrFI CCNGG 1 cut(s) 156
SduI GDGCHC 1 cut(s) 94
SetI ASST 4 cut(s) 459, 479, 519, 624
SmlI CTYRAG 2 cut(s) 33, 113
SmoI CTYRAG 2 cut(s) 33, 113
Sse9I AATT 7 cut(s) 7, 119, 192, 344, 389, 434, 488
SspMI CTAG 1 cut(s) 167
StyD4I CCNGG 1 cut(s) 154
TaaI ACNGT 3 cut(s) 16, 330, 415
TaiI ACGT 3 cut(s) 459, 479, 624
TaqI TCGA 2 cut(s) 203, 450
TasI AATT 7 cut(s) 7, 119, 192, 344, 389, 434, 488
TatI WGTACW 3 cut(s) 136, 381, 534
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 2 cut(s) 122, 347
Tru9I TTAA 2 cut(s) 122, 347
TscAI CASTG 1 cut(s) 21
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 1 cut(s) 209
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 1 cut(s) 482
TspRI CASTG 1 cut(s) 21
Van91I CCANNNNNTGG 1 cut(s) 155
VspI ATTAAT 1 cut(s) 347
XapI RAATTY 3 cut(s) 389, 434, 488
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 1 cut(s) 167
ZrmI AGTACT 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.