FvH4_3g09760

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000135
Physical Location & Seq
Forward (+)
5683884 .. 5684804
921 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g09760.t1

Sequence Viewer

Length: 921 bp
ATGACTAGAAGCCAACTACCTGTGTTTCCTGATGGGTCAGAATTTATGAAGATGCTCAAAGCATCTATAGAGATTGAAGAAAGGAGCTATGGGGTTATTGTTATCAGCTTTTATGAACTAGAACCAGCTTATGCAAATCATTACAGGAAGGTCTTTGGGCGGAAGGCATGGCATATCGGCCCTGTTTCATTATGCAATAAGGCAATAGAGGATAAAGCAGAGAGGGGATCAATAAAAAGCTCGACTGCTGAGAAACATGAGTGTTTGAAATGGCTTGATTCAAAGAAACCCCGTTCGGTTGTTTATGTATCATTCGAAAGCATGGTCCGTTTTGCTGATTCTCAGCTACTAGAAATCGCAACAGGCATTGAGGCATCTGGACAAGACTTCATTTGGGTTGTAAAGAAAGAAAAGAAAGAAGTAGAAGAGTGGTTGCCTGAAGGATTTGAGAAGAGAATGGAAGGTAAGGGACTGATCATAAGAGATTGGGCTCCTCAAGTGCTGATTCTTGAGCATGAAGCAATAGGAGCATTTGTGACTCACTGTGGGTGGAACTCTATCCTAGAAGCAGTGTCTGCCGGAGTTCCAATGATCACGTGGCCGGTGTTCGCGGAGCAGTTTTACAATGAGAAGTTGGTGACTGAGACACTTAGGATTGGGGTTCCTGTTAGTTCTGAAAAATGGGCTTTCTCATTTGTGGATGTAAATGCAGAGACAGAAGGGAGGGTGAGGAGGGAGGCCATAGAGGAGGCTGTGACTAGAATCATGGTGGGTGATGAAGCCGTGGAAATGAGAAGCAAAGTGAAAGAGCTTGGGGAGAATGCAAGGAGGGCTGTTGAAGATGGTGGATCATCTTTCTTGGATTTGTCTACCCTAGTCGGAGAGTTGAACGACCTAGCTTTTGGAGGCTTAGTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

307

Amino Acids

34.47

Weight (kDa)

5.15

Isoelectric Point (pI)

53.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 81 - 214 1.3e-24 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000135)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15480 AT2G15480 AT2G15490 AT2G15490 AT2G15490 AT4G34131 AT4G34135 AT4G34135 AT4G34138
fragaria_vesca FvH4_2g05600 FvH4_2g05601 FvH4_2g05602 FvH4_2g05603 FvH4_2g05604 FvH4_2g05630 FvH4_2g05660 FvH4_2g05662 FvH4_2g05663 FvH4_2g05671 FvH4_2g05680 FvH4_3g09760 FvH4_3g09780 FvH4_7g23180
malus_domestica MD00G1046200.v1.1 MD04G1214200.v1.1 MD05G1085700.v1.1 MD05G1085800.v1.1 MD05G1086200.v1.1 MD05G1086300.v1.1 MD05G1091500.v1.1 MD07G1007400.v1.1 MD07G1007500.v1.1 MD07G1007600.v1.1 MD17G1100000.v1.1 MD17G1100300.v1.1
prunus_persica Prupe.8G129800_v2.0.a1 Prupe.8G130100_v2.0.a1 Prupe.8G130200_v2.0.a1 Prupe.8G130300_v2.0.a1 Prupe.8G130400_v2.0.a1 Prupe.8G130500_v2.0.a1 Prupe.8G130600_v2.0.a1 Prupe.8G130700_v2.0.a1 Prupe.8G130800_v2.0.a1 Prupe.8G130900_v2.0.a1 Prupe.8G131000_v2.0.a1 Prupe.8G131000_v2.0.a1
pyrus_communis pycom05g08530 pycom05g08560 pycom07g00600 pycom07g00610 pycom07g00620 pycom17g09520 pycom2675g00060
rosa_chinensis RchiOBHm_Chr2g0111601 RchiOBHm_Chr2g0125751 RchiOBHm_Chr6g0248631 RchiOBHm_Chr6g0248721 RchiOBHm_Chr6g0255881 RchiOBHm_Chr6g0255911 RchiOBHm_Chr6g0255931 RchiOBHm_Chr6g0256041 RchiOBHm_Chr6g0256061 RchiOBHm_Chr6g0256081 RchiOBHm_Chr6g0256121 RchiOBHm_Chr6g0256131 RchiOBHm_Chr6g0256151 RchiOBHm_Chr6g0256161 RchiOBHm_Chr6g0256211 RchiOBHm_Chr6g0256221 RchiOBHm_Chr6g0256241 RchiOBHm_Chr6g0256251 RchiOBHm_Chr6g0256311 RchiOBHm_Chr6g0256331 RchiOBHm_Chr6g0256351 RchiOBHm_Chr6g0256361 RchiOBHm_Chr6g0256371 RchiOBHm_Chr6g0256411 RchiOBHm_Chr6g0256421 RchiOBHm_Chr6g0256431 RchiOBHm_Chr6g0256461 RchiOBHm_Chr6g0256471 RchiOBHm_Chr6g0256501 RchiOBHm_Chr6g0256511 RchiOBHm_Chr6g0256521 RchiOBHm_Chr6g0256531 RchiOBHm_Chr6g0256611 RchiOBHm_Chr6g0257761 RchiOBHm_Chr6g0276931
rosa_laevigata RLG00000014720 RLG00000014721 RLG00000014763 RLG00000014766 RLG00000014768 RLG00000014769 RLG00000014770 RLG00000014774 RLG00000014776 RLG00000014777 RLG00000014778 RLG00000014781 RLG00000014782 RLG00000014783 RLG00000014786 RLG00000014787 RLG00000014788 RLG00000014789 RLG00000014790 RLG00000014791 RLG00000014793 RLG00000014795 RLG00000014799 RLG00000014800 RLG00000014803 RLG00000014805 RLG00000015130 RLG00000015139
rosa_multiflora Rmu_co8160604.1_g000001 Rmu_sc0001598.1_g000016 Rmu_sc0001598.1_g000018 Rmu_sc0001598.1_g000024 Rmu_sc0001738.1_g000012 Rmu_sc0001738.1_g000013 Rmu_sc0001896.1_g000025 Rmu_sc0001896.1_g000029 Rmu_sc0001896.1_g000037 Rmu_sc0001896.1_g000039 Rmu_sc0002393.1_g000006 Rmu_sc0002553.1_g000039 Rmu_sc0004414.1_g000007 Rmu_sc0005080.1_g000001 Rmu_sc0005080.1_g000002 Rmu_sc0005080.1_g000003 Rmu_sc0005080.1_g000006 Rmu_sc0005080.1_g000007 Rmu_sc0005080.1_g000008 Rmu_sc0005080.1_g000010 Rmu_sc0005080.1_g000011 Rmu_sc0005080.1_g000012 Rmu_sc0008707.1_g000001 Rmu_sc0008707.1_g000003 Rmu_sc0008832.1_g000002 Rmu_sc0010826.1_g000012 Rmu_sc0011315.1_g000009 Rmu_sc0019708.1_g000001
rosa_roxburghii Rroxscaffold_2G00108580 Rroxscaffold_7G00208920 Rroxscaffold_7G00209240 Rroxscaffold_7G00209250 Rroxscaffold_7G00209260 Rroxscaffold_7G00209270 Rroxscaffold_7G00209360 Rroxscaffold_7G00209380 Rroxscaffold_7G00209390 Rroxscaffold_7G00209430 Rroxscaffold_7G00209440 Rroxscaffold_7G00209510 Rroxscaffold_7G00209540
rosa_rugosa Rorug05G0532600 Rorug05G0562400 Rorug05G0562500 Rorug05G0563000 Rorug05G0563100 Rorug05G0563300 Rorug05G0563300 Rorug05G0563600 Rorug05G0563700 Rorug05G0563800 Rorug05G0564000 Rorug05G0564100 Rorug05G0564200 Rorug05G0564300 Rorug05G0564400 Rorug05G0564500 Rorug05G0564600 Rorug05G0564600 Rorug05G0568600 Rorug05G0568700
rosa_wichuraiana Rw6G004280 Rw6G004380 Rw6G006940 Rw6G006950 Rw6G006960 Rw6G007000 Rw6G007090 Rw6G007100 Rw6G007110 Rw6G007150 Rw6G007160 Rw6G007170 Rw6G007200 Rw6G007210 Rw6G007240 Rw6G007250 Rw6G007280 Rw6G007290 Rw6G007300 Rw6G007310 Rw6G007320 Rw6G007340 Rw6G007350 Rw6G007360 Rw6G007380 Rw6G007660 Rw6G018660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 869
AccII CGCG 1 cut(s) 611
AciI CCGC 2 cut(s) 160, 611
AclWI GGATC 2 cut(s) 235, 856
AcoI YGGCCR 1 cut(s) 599
AcsI RAATTY 1 cut(s) 41
AcuI CTGAAG 1 cut(s) 459
AcvI CACGTG 1 cut(s) 597
AgsI TTSAA 6 cut(s) 77, 268, 282, 839, 889, 917
AluBI AGCT 7 cut(s) 87, 108, 128, 240, 346, 811, 899
AluI AGCT 7 cut(s) 87, 108, 128, 240, 346, 811, 899
Alw26I GTCTC 2 cut(s) 638, 707
AlwI GGATC 2 cut(s) 235, 856
AlwNI CAGNNNCTG 1 cut(s) 575
AoxI GGCC 3 cut(s) 178, 599, 738
ApoI RAATTY 1 cut(s) 41
ArsI GACNNNNNNTTYG 4 cut(s) 309, 341, 884, 916
AspS9I GGNCC 2 cut(s) 179, 325
AsuHPI GGTGA 3 cut(s) 649, 739, 785
AsuII TTCGAA 1 cut(s) 315
AvaII GGWCC 1 cut(s) 325
BanII GRGCYC 1 cut(s) 493
BbrPI CACGTG 1 cut(s) 597
BccI CCATC 2 cut(s) 26, 836
BceAI ACGGC 1 cut(s) 767
BclI TGATCA 2 cut(s) 474, 591
BcoDI GTCTC 2 cut(s) 638, 707
BfaI CTAG 7 cut(s) 6, 119, 350, 563, 759, 875, 896
BfmI CTRYAG 1 cut(s) 66
Bme18I GGWCC 1 cut(s) 325
BmgT120I GGNCC 2 cut(s) 179, 325
BmiI GGNNCC 2 cut(s) 492, 663
BmsI GCATC 3 cut(s) 42, 71, 383
Bpu14I TTCGAA 1 cut(s) 315
BpuEI CTTGAG 2 cut(s) 480, 530
BsaAI YACGTR 1 cut(s) 597
BsaJI CCNNGG 1 cut(s) 783
BsaXI ACNNNNNCTCC 3 cut(s) 519, 549, 897
Bse118I RCCGGY 1 cut(s) 601
BseDI CCNNGG 1 cut(s) 783
BseGI GGATG 1 cut(s) 706
BseMII CTCAG 3 cut(s) 240, 356, 633
BseRI GAGGAG 3 cut(s) 483, 745, 761
Bsh1236I CGCG 1 cut(s) 611
BshFI GGCC 3 cut(s) 180, 601, 740
BsiSI CCGG 2 cut(s) 579, 602
BslFI GGGAC 1 cut(s) 483
BsmAI GTCTC 2 cut(s) 638, 707
BsmFI GGGAC 1 cut(s) 483
BsmI GAATGC 1 cut(s) 826
BsnI GGCC 3 cut(s) 180, 601, 740
Bsp119I TTCGAA 1 cut(s) 315
Bsp1286I GDGCHC 1 cut(s) 493
Bsp143I GATC 4 cut(s) 227, 474, 591, 848
BspACI CCGC 2 cut(s) 160, 611
BspANI GGCC 3 cut(s) 180, 601, 740
BspCNI CTCAG 3 cut(s) 241, 355, 634
BspFNI CGCG 1 cut(s) 611
BspLI GGNNCC 2 cut(s) 492, 663
BspPI GGATC 2 cut(s) 235, 856
BspT104I TTCGAA 1 cut(s) 315
BsrFI RCCGGY 1 cut(s) 601
BssAI RCCGGY 1 cut(s) 601
BssECI CCNNGG 1 cut(s) 783
BssMI GATC 4 cut(s) 227, 474, 591, 848
Bst4CI ACNGT 1 cut(s) 545
Bst6I CTCTTC 2 cut(s) 420, 446
BstAPI GCANNNNNTGC 1 cut(s) 575
BstBAI YACGTR 1 cut(s) 597
BstBI TTCGAA 1 cut(s) 315
BstDEI CTNAG 5 cut(s) 249, 342, 642, 650, 910
BstDSI CCRYGG 1 cut(s) 783
BstF5I GGATG 1 cut(s) 706
BstFNI CGCG 1 cut(s) 611
BstKTI GATC 4 cut(s) 230, 477, 594, 851
BstMAI GTCTC 2 cut(s) 638, 707
BstMBI GATC 4 cut(s) 227, 474, 591, 848
BstMWI GCNNNNNNNGC 3 cut(s) 527, 575, 830
BstSFI CTRYAG 1 cut(s) 66
BstUI CGCG 1 cut(s) 611
BsuRI GGCC 3 cut(s) 180, 601, 740
BtgI CCRYGG 1 cut(s) 783
BtsCI GGATG 1 cut(s) 706
BtsI GCAGTG 1 cut(s) 576
BtsIMutI CAGTG 2 cut(s) 541, 576
CaiI CAGNNNCTG 1 cut(s) 575
Cfr10I RCCGGY 1 cut(s) 601
Cfr13I GGNCC 2 cut(s) 179, 325
CviAII CATG 5 cut(s) 168, 257, 322, 515, 766
DdeI CTNAG 5 cut(s) 249, 342, 642, 650, 910
DpnI GATC 4 cut(s) 229, 476, 593, 850
DpnII GATC 4 cut(s) 227, 474, 591, 848
EaeI YGGCCR 1 cut(s) 599
Eam1104I CTCTTC 2 cut(s) 420, 446
EarI CTCTTC 2 cut(s) 420, 446
EciI GGCGGA 1 cut(s) 175
Eco24I GRGCYC 1 cut(s) 493
Eco47I GGWCC 1 cut(s) 325
Eco57I CTGAAG 1 cut(s) 459
Eco72I CACGTG 1 cut(s) 597
EcoT38I GRGCYC 1 cut(s) 493
FaeI CATG 5 cut(s) 171, 260, 325, 518, 769
FaqI GGGAC 1 cut(s) 483
FatI CATG 5 cut(s) 167, 256, 321, 514, 765
FbaI TGATCA 2 cut(s) 474, 591
FblI GTMKAC 1 cut(s) 869
FokI GGATG 1 cut(s) 713
FriOI GRGCYC 1 cut(s) 493
FspBI CTAG 7 cut(s) 6, 119, 350, 563, 759, 875, 896
HaeIII GGCC 3 cut(s) 180, 601, 740
HapII CCGG 2 cut(s) 579, 602
Hin1II CATG 5 cut(s) 171, 260, 325, 518, 769
HinfI GANTC 5 cut(s) 278, 338, 505, 538, 762
HpaII CCGG 2 cut(s) 579, 602
HphI GGTGA 3 cut(s) 649, 739, 785
Hpy166II GTNNAC 1 cut(s) 870
Hpy188I TCNGA 3 cut(s) 40, 676, 881
Hpy188III TCNNGA 3 cut(s) 29, 378, 509
Hpy8I GTNNAC 1 cut(s) 870
HpyAV CCTTC 5 cut(s) 142, 157, 434, 455, 713
HpyCH4III ACNGT 1 cut(s) 545
HpyCH4IV ACGT 1 cut(s) 596
HpyCH4V TGCA 4 cut(s) 134, 195, 710, 824
HpyF10VI GCNNNNNNNGC 3 cut(s) 527, 575, 830
HpyF3I CTNAG 5 cut(s) 249, 342, 642, 650, 910
HpySE526I ACGT 1 cut(s) 596
Hsp92II CATG 5 cut(s) 171, 260, 325, 518, 769
Ksp22I TGATCA 2 cut(s) 474, 591
Kzo9I GATC 4 cut(s) 227, 474, 591, 848
LmnI GCTCC 4 cut(s) 84, 496, 527, 613
LweI GCATC 3 cut(s) 42, 71, 383
MaeI CTAG 7 cut(s) 6, 119, 350, 563, 759, 875, 896
MaeII ACGT 1 cut(s) 596
MaeIII GTNAC 3 cut(s) 535, 637, 754
MalI GATC 4 cut(s) 229, 476, 593, 850
MboI GATC 4 cut(s) 227, 474, 591, 848
MboII GAAGA 5 cut(s) 61, 89, 437, 463, 851
MhlI GDGCHC 1 cut(s) 493
MluCI AATT 1 cut(s) 41
MlyI GAGTC 1 cut(s) 532
MmeI TCCRAC 1 cut(s) 859
MspI CCGG 2 cut(s) 579, 602
Mva1269I GAATGC 1 cut(s) 826
MvnI CGCG 1 cut(s) 611
MwoI GCNNNNNNNGC 3 cut(s) 527, 575, 830
NdeII GATC 4 cut(s) 227, 474, 591, 848
NlaIII CATG 5 cut(s) 171, 260, 325, 518, 769
NlaIV GGNNCC 2 cut(s) 492, 663
NmuCI GTSAC 3 cut(s) 535, 637, 754
NspV TTCGAA 1 cut(s) 315
PctI GAATGC 1 cut(s) 826
PfeI GAWTC 4 cut(s) 278, 338, 505, 762
PleI GAGTC 1 cut(s) 532
PmaCI CACGTG 1 cut(s) 597
PmlI CACGTG 1 cut(s) 597
PpsI GAGTC 1 cut(s) 532
Ppu21I YACGTR 1 cut(s) 597
PspCI CACGTG 1 cut(s) 597
PspN4I GGNNCC 2 cut(s) 492, 663
PspPI GGNCC 2 cut(s) 179, 325
PstNI CAGNNNCTG 1 cut(s) 575
Sau3AI GATC 4 cut(s) 227, 474, 591, 848
Sau96I GGNCC 2 cut(s) 179, 325
SchI GAGTC 1 cut(s) 532
SduI GDGCHC 1 cut(s) 493
SfaNI GCATC 3 cut(s) 42, 71, 383
SfcI CTRYAG 1 cut(s) 66
SfuI TTCGAA 1 cut(s) 315
SinI GGWCC 1 cut(s) 325
SmlI CTYRAG 2 cut(s) 495, 509
SmoI CTYRAG 2 cut(s) 495, 509
Sse9I AATT 1 cut(s) 41
SsiI CCGC 2 cut(s) 160, 611
SspMI CTAG 7 cut(s) 6, 119, 350, 563, 759, 875, 896
TaaI ACNGT 1 cut(s) 545
TaiI ACGT 1 cut(s) 599
TaqI TCGA 2 cut(s) 242, 315
TasI AATT 1 cut(s) 41
TfiI GAWTC 4 cut(s) 278, 338, 505, 762
TscAI CASTG 2 cut(s) 548, 576
TseFI GTSAC 3 cut(s) 535, 637, 754
Tsp45I GTSAC 3 cut(s) 535, 637, 754
TspDTI ATGAA 6 cut(s) 62, 129, 177, 379, 531, 792
TspGWI ACGGA 1 cut(s) 317
TspRI CASTG 2 cut(s) 548, 576
VpaK11BI GGWCC 1 cut(s) 325
XapI RAATTY 1 cut(s) 41
XcmI CCANNNNNNNNNTGG 1 cut(s) 594
XmiI GTMKAC 1 cut(s) 869
XspI CTAG 7 cut(s) 6, 119, 350, 563, 759, 875, 896
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.