RchiOBHm_Chr6g0255911

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
11343055 .. 11343522
468 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22953

Sequence Viewer

Length: 468 bp
ATGGAGACCAAAACCGGCCAGTCTCACATTTTCTTCTTCCCCTATTTGAGTCAAGGACACATAATACCAGTCATAGACATGGCCAAACTATTTGCTTCCAAAGGTATCAAAACCACCATAGTTTCTACCCCTCATAACTTGTCCCTTTTCTCCAAAACAATCGAAAGAAGCAAACTTTCTGGTTTGGAAATCGGAGTCCTTGCCATCAAATTTCCTGCTGTGGAGGTTGGATTGCCAGAAGGGTGTGAGAGTGCTCACATGGTCGAAGGGTATGAAGACCTCCAAAAGTTCTTGAAGGCCACAACCATGCTAGAGCAACCACTTGAGAAGCTGATCAAAGAACACAGACCCAATTGTCTTGTAGCCGACATTTTTTTCCCATGGACAACTGATGTTGCTGCAAGGTTTGGAATTCCAAGGCTTGTTTTCCATGGAACAAATTTCATCTCTCTATCAGTTTCACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

155

Amino Acids

17.26

Weight (kDa)

7.01

Isoelectric Point (pI)

33.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000135)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15480 AT2G15480 AT2G15490 AT2G15490 AT2G15490 AT4G34131 AT4G34135 AT4G34135 AT4G34138
fragaria_vesca FvH4_2g05600 FvH4_2g05601 FvH4_2g05602 FvH4_2g05603 FvH4_2g05604 FvH4_2g05630 FvH4_2g05660 FvH4_2g05662 FvH4_2g05663 FvH4_2g05671 FvH4_2g05680 FvH4_3g09760 FvH4_3g09780 FvH4_7g23180
malus_domestica MD00G1046200.v1.1 MD04G1214200.v1.1 MD05G1085700.v1.1 MD05G1085800.v1.1 MD05G1086200.v1.1 MD05G1086300.v1.1 MD05G1091500.v1.1 MD07G1007400.v1.1 MD07G1007500.v1.1 MD07G1007600.v1.1 MD17G1100000.v1.1 MD17G1100300.v1.1
prunus_persica Prupe.8G129800_v2.0.a1 Prupe.8G130100_v2.0.a1 Prupe.8G130200_v2.0.a1 Prupe.8G130300_v2.0.a1 Prupe.8G130400_v2.0.a1 Prupe.8G130500_v2.0.a1 Prupe.8G130600_v2.0.a1 Prupe.8G130700_v2.0.a1 Prupe.8G130800_v2.0.a1 Prupe.8G130900_v2.0.a1 Prupe.8G131000_v2.0.a1 Prupe.8G131000_v2.0.a1
pyrus_communis pycom05g08530 pycom05g08560 pycom07g00600 pycom07g00610 pycom07g00620 pycom17g09520 pycom2675g00060
rosa_chinensis RchiOBHm_Chr2g0111601 RchiOBHm_Chr2g0125751 RchiOBHm_Chr6g0248631 RchiOBHm_Chr6g0248721 RchiOBHm_Chr6g0255881 RchiOBHm_Chr6g0255911 RchiOBHm_Chr6g0255931 RchiOBHm_Chr6g0256041 RchiOBHm_Chr6g0256061 RchiOBHm_Chr6g0256081 RchiOBHm_Chr6g0256121 RchiOBHm_Chr6g0256131 RchiOBHm_Chr6g0256151 RchiOBHm_Chr6g0256161 RchiOBHm_Chr6g0256211 RchiOBHm_Chr6g0256221 RchiOBHm_Chr6g0256241 RchiOBHm_Chr6g0256251 RchiOBHm_Chr6g0256311 RchiOBHm_Chr6g0256331 RchiOBHm_Chr6g0256351 RchiOBHm_Chr6g0256361 RchiOBHm_Chr6g0256371 RchiOBHm_Chr6g0256411 RchiOBHm_Chr6g0256421 RchiOBHm_Chr6g0256431 RchiOBHm_Chr6g0256461 RchiOBHm_Chr6g0256471 RchiOBHm_Chr6g0256501 RchiOBHm_Chr6g0256511 RchiOBHm_Chr6g0256521 RchiOBHm_Chr6g0256531 RchiOBHm_Chr6g0256611 RchiOBHm_Chr6g0257761 RchiOBHm_Chr6g0276931
rosa_laevigata RLG00000014720 RLG00000014721 RLG00000014763 RLG00000014766 RLG00000014768 RLG00000014769 RLG00000014770 RLG00000014774 RLG00000014776 RLG00000014777 RLG00000014778 RLG00000014781 RLG00000014782 RLG00000014783 RLG00000014786 RLG00000014787 RLG00000014788 RLG00000014789 RLG00000014790 RLG00000014791 RLG00000014793 RLG00000014795 RLG00000014799 RLG00000014800 RLG00000014803 RLG00000014805 RLG00000015130 RLG00000015139
rosa_multiflora Rmu_co8160604.1_g000001 Rmu_sc0001598.1_g000016 Rmu_sc0001598.1_g000018 Rmu_sc0001598.1_g000024 Rmu_sc0001738.1_g000012 Rmu_sc0001738.1_g000013 Rmu_sc0001896.1_g000025 Rmu_sc0001896.1_g000029 Rmu_sc0001896.1_g000037 Rmu_sc0001896.1_g000039 Rmu_sc0002393.1_g000006 Rmu_sc0002553.1_g000039 Rmu_sc0004414.1_g000007 Rmu_sc0005080.1_g000001 Rmu_sc0005080.1_g000002 Rmu_sc0005080.1_g000003 Rmu_sc0005080.1_g000006 Rmu_sc0005080.1_g000007 Rmu_sc0005080.1_g000008 Rmu_sc0005080.1_g000010 Rmu_sc0005080.1_g000011 Rmu_sc0005080.1_g000012 Rmu_sc0008707.1_g000001 Rmu_sc0008707.1_g000003 Rmu_sc0008832.1_g000002 Rmu_sc0010826.1_g000012 Rmu_sc0011315.1_g000009 Rmu_sc0019708.1_g000001
rosa_roxburghii Rroxscaffold_2G00108580 Rroxscaffold_7G00208920 Rroxscaffold_7G00209240 Rroxscaffold_7G00209250 Rroxscaffold_7G00209260 Rroxscaffold_7G00209270 Rroxscaffold_7G00209360 Rroxscaffold_7G00209380 Rroxscaffold_7G00209390 Rroxscaffold_7G00209430 Rroxscaffold_7G00209440 Rroxscaffold_7G00209510 Rroxscaffold_7G00209540
rosa_rugosa Rorug05G0532600 Rorug05G0562400 Rorug05G0562500 Rorug05G0563000 Rorug05G0563100 Rorug05G0563300 Rorug05G0563300 Rorug05G0563600 Rorug05G0563700 Rorug05G0563800 Rorug05G0564000 Rorug05G0564100 Rorug05G0564200 Rorug05G0564300 Rorug05G0564400 Rorug05G0564500 Rorug05G0564600 Rorug05G0564600 Rorug05G0568600 Rorug05G0568700
rosa_wichuraiana Rw6G004280 Rw6G004380 Rw6G006940 Rw6G006950 Rw6G006960 Rw6G007000 Rw6G007090 Rw6G007100 Rw6G007110 Rw6G007150 Rw6G007160 Rw6G007170 Rw6G007200 Rw6G007210 Rw6G007240 Rw6G007250 Rw6G007280 Rw6G007290 Rw6G007300 Rw6G007310 Rw6G007320 Rw6G007340 Rw6G007350 Rw6G007360 Rw6G007380 Rw6G007660 Rw6G018660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 354
AcoI YGGCCR 2 cut(s) 16, 81
AcsI RAATTY 3 cut(s) 209, 411, 439
AgsI TTSAA 1 cut(s) 295
AluBI AGCT 1 cut(s) 331
AluI AGCT 1 cut(s) 331
Alw21I GWGCWC 1 cut(s) 256
Alw26I GTCTC 1 cut(s) 27
AoxI GGCC 3 cut(s) 16, 81, 297
ApeKI GCWGC 1 cut(s) 398
ApoI RAATTY 3 cut(s) 209, 411, 439
BalI TGGCCA 1 cut(s) 83
BbsI GAAGAC 1 cut(s) 282
Bbv12I GWGCWC 1 cut(s) 256
BbvI GCAGC 1 cut(s) 385
BccI CCATC 1 cut(s) 212
BclI TGATCA 1 cut(s) 333
BcoDI GTCTC 1 cut(s) 27
BfaI CTAG 1 cut(s) 311
BisI GCNGC 1 cut(s) 399
BlsI GCNGC 1 cut(s) 400
BpiI GAAGAC 1 cut(s) 282
BpuEI CTTGAG 1 cut(s) 344
BsaJI CCNNGG 3 cut(s) 380, 416, 430
Bse118I RCCGGY 1 cut(s) 14
Bse1I ACTGG 2 cut(s) 19, 68
BseDI CCNNGG 3 cut(s) 380, 416, 430
BseNI ACTGG 2 cut(s) 19, 68
BseXI GCAGC 1 cut(s) 385
BshFI GGCC 3 cut(s) 18, 83, 299
BsiHKAI GWGCWC 1 cut(s) 256
BsiSI CCGG 1 cut(s) 15
BslFI GGGAC 1 cut(s) 127
BsmAI GTCTC 1 cut(s) 27
BsmFI GGGAC 1 cut(s) 127
BsnI GGCC 3 cut(s) 18, 83, 299
Bsp1286I GDGCHC 1 cut(s) 256
Bsp143I GATC 1 cut(s) 333
Bsp19I CCATGG 2 cut(s) 380, 430
BspANI GGCC 3 cut(s) 18, 83, 299
BsrFI RCCGGY 1 cut(s) 14
BsrI ACTGG 2 cut(s) 19, 68
BssAI RCCGGY 1 cut(s) 14
BssECI CCNNGG 3 cut(s) 380, 416, 430
BssMI GATC 1 cut(s) 333
BssT1I CCWWGG 3 cut(s) 380, 416, 430
Bst4CI ACNGT 1 cut(s) 465
BstDSI CCRYGG 2 cut(s) 380, 430
BstKTI GATC 1 cut(s) 336
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 1 cut(s) 333
BstV1I GCAGC 1 cut(s) 385
BstV2I GAAGAC 1 cut(s) 282
BsuRI GGCC 3 cut(s) 18, 83, 299
BtgI CCRYGG 2 cut(s) 380, 430
Cfr10I RCCGGY 1 cut(s) 14
CviAII CATG 5 cut(s) 79, 259, 307, 381, 431
CviJI RGCY 6 cut(s) 18, 83, 299, 331, 365, 421
CviKI_1 RGCY 6 cut(s) 18, 83, 299, 331, 365, 421
DpnI GATC 1 cut(s) 335
DpnII GATC 1 cut(s) 333
DrdI GACNNNNNNGTC 1 cut(s) 354
DseDI GACNNNNNNGTC 1 cut(s) 354
EaeI YGGCCR 2 cut(s) 16, 81
Eco130I CCWWGG 3 cut(s) 380, 416, 430
EcoRI GAATTC 1 cut(s) 411
EcoT14I CCWWGG 3 cut(s) 380, 416, 430
ErhI CCWWGG 3 cut(s) 380, 416, 430
FaeI CATG 5 cut(s) 82, 262, 310, 384, 434
FaqI GGGAC 1 cut(s) 127
FatI CATG 5 cut(s) 78, 258, 306, 380, 430
FbaI TGATCA 1 cut(s) 333
Fnu4HI GCNGC 1 cut(s) 399
Fsp4HI GCNGC 1 cut(s) 399
FspBI CTAG 1 cut(s) 311
GluI GCNGC 1 cut(s) 399
HaeIII GGCC 3 cut(s) 18, 83, 299
HapII CCGG 1 cut(s) 15
Hin1II CATG 5 cut(s) 82, 262, 310, 384, 434
HinfI GANTC 2 cut(s) 49, 195
HpaII CCGG 1 cut(s) 15
Hpy188I TCNGA 1 cut(s) 194
Hpy188III TCNNGA 1 cut(s) 292
HpyAV CCTTC 3 cut(s) 233, 260, 289
HpyCH4III ACNGT 1 cut(s) 465
HpyCH4V TGCA 1 cut(s) 401
Hsp92II CATG 5 cut(s) 82, 262, 310, 384, 434
Ksp22I TGATCA 1 cut(s) 333
Kzo9I GATC 1 cut(s) 333
LpnPI CCDG 6 cut(s) 28, 32, 81, 165, 228, 249
Lsp1109I GCAGC 1 cut(s) 385
MaeI CTAG 1 cut(s) 311
MalI GATC 1 cut(s) 335
MboI GATC 1 cut(s) 333
MboII GAAGA 3 cut(s) 25, 28, 287
MfeI CAATTG 1 cut(s) 352
MhlI GDGCHC 1 cut(s) 256
MlsI TGGCCA 1 cut(s) 83
MluCI AATT 4 cut(s) 209, 352, 411, 439
MluNI TGGCCA 1 cut(s) 83
MlyI GAGTC 2 cut(s) 58, 204
MmeI TCCRAC 1 cut(s) 208
MnlI CCTC 3 cut(s) 141, 217, 290
Mox20I TGGCCA 1 cut(s) 83
MscI TGGCCA 1 cut(s) 83
MslI CAYNNNNRTG 2 cut(s) 77, 305
Msp20I TGGCCA 1 cut(s) 83
MspI CCGG 1 cut(s) 15
MunI CAATTG 1 cut(s) 352
NcoI CCATGG 2 cut(s) 380, 430
NdeII GATC 1 cut(s) 333
NlaIII CATG 5 cut(s) 82, 262, 310, 384, 434
PkrI GCNGC 1 cut(s) 400
PleI GAGTC 2 cut(s) 57, 203
PpsI GAGTC 2 cut(s) 57, 203
RseI CAYNNNNRTG 2 cut(s) 77, 305
SatI GCNGC 1 cut(s) 399
Sau3AI GATC 1 cut(s) 333
SchI GAGTC 2 cut(s) 58, 204
SduI GDGCHC 1 cut(s) 256
SetI ASST 5 cut(s) 106, 228, 282, 333, 407
SmiMI CAYNNNNRTG 2 cut(s) 77, 305
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
Sse9I AATT 4 cut(s) 209, 352, 411, 439
SspMI CTAG 1 cut(s) 311
StyI CCWWGG 3 cut(s) 380, 416, 430
TaaI ACNGT 1 cut(s) 465
TaqI TCGA 2 cut(s) 162, 264
TasI AATT 4 cut(s) 209, 352, 411, 439
TseI GCWGC 1 cut(s) 398
TspDTI ATGAA 2 cut(s) 288, 433
XapI RAATTY 3 cut(s) 209, 411, 439
XspI CTAG 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.