RchiOBHm_Chr2g0111601

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000135
Physical Location & Seq
Reverse (-)
23246949 .. 23247783
835 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48518

Sequence Viewer

Length: 765 bp
ATGGACAAGGAGGCTGGTCTGCCGAAAGGTTTCGAGACTGTCGACTCATTACCCCAGCCGGAATTAGTCAACAAGTTCTTCATAGCCACACGCTTGCTTCAAGCACCGCTCGAGGAGCTTCTCAACGAGTTCAAACCAACTTGCCTTGTAGCTGACATATTCTATCCTTGGACTACTGAAGCCGCTGCGAAATTCGGTATTCCGAGGTTGGTTTTTCATGGGACTGGCTTCTTTTCTCTATCTGCTTTGGAGTGTGTGAGACTCTATCAGCCTTACAATACAGTTTCAGGTGAAACTGATCCTTTTGTGATCCCCGATTTGCCTGGTGGGATTGAATTGACAAGATCCCAGCTGCCTGATTTTGTCAAGGATAATGTTTTAAATGACTTGACTCAGTTGCTGAAAAAGGCTAGGGAATCGGAGTTGAAGAGCTATGGAGTTGTTGTTAACAGTTTCTATGAGCTCGAACCGGTTTATGCAGATTATTACAGAAATGGGTTGGGGAGAAAGGCATGGCATATAGGCCTGGTTTCTCTATGCAATAAAGAGACAGAGGAGAAAGTACAAAGAGGAAAAGGAGTGTCAATTGATGAGCATAAGTGTTTGAAATGGCTTGATTCAAAGAAACCAGATTCAGTTGTGTATGTCTGTTTTGGGAGTGTGGCCGATTTCAATTCCACTCAGCTCAAGGAGGTTGCTGTGGCTCTGGAAGCTGCTGGGCAATATTATGTAGATATATATACATTTTTGTTCGCAATATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

254

Amino Acids

28.62

Weight (kDa)

5.05

Isoelectric Point (pI)

31.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000135)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15480 AT2G15480 AT2G15490 AT2G15490 AT2G15490 AT4G34131 AT4G34135 AT4G34135 AT4G34138
fragaria_vesca FvH4_2g05600 FvH4_2g05601 FvH4_2g05602 FvH4_2g05603 FvH4_2g05604 FvH4_2g05630 FvH4_2g05660 FvH4_2g05662 FvH4_2g05663 FvH4_2g05671 FvH4_2g05680 FvH4_3g09760 FvH4_3g09780 FvH4_7g23180
malus_domestica MD00G1046200.v1.1 MD04G1214200.v1.1 MD05G1085700.v1.1 MD05G1085800.v1.1 MD05G1086200.v1.1 MD05G1086300.v1.1 MD05G1091500.v1.1 MD07G1007400.v1.1 MD07G1007500.v1.1 MD07G1007600.v1.1 MD17G1100000.v1.1 MD17G1100300.v1.1
prunus_persica Prupe.8G129800_v2.0.a1 Prupe.8G130100_v2.0.a1 Prupe.8G130200_v2.0.a1 Prupe.8G130300_v2.0.a1 Prupe.8G130400_v2.0.a1 Prupe.8G130500_v2.0.a1 Prupe.8G130600_v2.0.a1 Prupe.8G130700_v2.0.a1 Prupe.8G130800_v2.0.a1 Prupe.8G130900_v2.0.a1 Prupe.8G131000_v2.0.a1 Prupe.8G131000_v2.0.a1
pyrus_communis pycom05g08530 pycom05g08560 pycom07g00600 pycom07g00610 pycom07g00620 pycom17g09520 pycom2675g00060
rosa_chinensis RchiOBHm_Chr2g0111601 RchiOBHm_Chr2g0125751 RchiOBHm_Chr6g0248631 RchiOBHm_Chr6g0248721 RchiOBHm_Chr6g0255881 RchiOBHm_Chr6g0255911 RchiOBHm_Chr6g0255931 RchiOBHm_Chr6g0256041 RchiOBHm_Chr6g0256061 RchiOBHm_Chr6g0256081 RchiOBHm_Chr6g0256121 RchiOBHm_Chr6g0256131 RchiOBHm_Chr6g0256151 RchiOBHm_Chr6g0256161 RchiOBHm_Chr6g0256211 RchiOBHm_Chr6g0256221 RchiOBHm_Chr6g0256241 RchiOBHm_Chr6g0256251 RchiOBHm_Chr6g0256311 RchiOBHm_Chr6g0256331 RchiOBHm_Chr6g0256351 RchiOBHm_Chr6g0256361 RchiOBHm_Chr6g0256371 RchiOBHm_Chr6g0256411 RchiOBHm_Chr6g0256421 RchiOBHm_Chr6g0256431 RchiOBHm_Chr6g0256461 RchiOBHm_Chr6g0256471 RchiOBHm_Chr6g0256501 RchiOBHm_Chr6g0256511 RchiOBHm_Chr6g0256521 RchiOBHm_Chr6g0256531 RchiOBHm_Chr6g0256611 RchiOBHm_Chr6g0257761 RchiOBHm_Chr6g0276931
rosa_laevigata RLG00000014720 RLG00000014721 RLG00000014763 RLG00000014766 RLG00000014768 RLG00000014769 RLG00000014770 RLG00000014774 RLG00000014776 RLG00000014777 RLG00000014778 RLG00000014781 RLG00000014782 RLG00000014783 RLG00000014786 RLG00000014787 RLG00000014788 RLG00000014789 RLG00000014790 RLG00000014791 RLG00000014793 RLG00000014795 RLG00000014799 RLG00000014800 RLG00000014803 RLG00000014805 RLG00000015130 RLG00000015139
rosa_multiflora Rmu_co8160604.1_g000001 Rmu_sc0001598.1_g000016 Rmu_sc0001598.1_g000018 Rmu_sc0001598.1_g000024 Rmu_sc0001738.1_g000012 Rmu_sc0001738.1_g000013 Rmu_sc0001896.1_g000025 Rmu_sc0001896.1_g000029 Rmu_sc0001896.1_g000037 Rmu_sc0001896.1_g000039 Rmu_sc0002393.1_g000006 Rmu_sc0002553.1_g000039 Rmu_sc0004414.1_g000007 Rmu_sc0005080.1_g000001 Rmu_sc0005080.1_g000002 Rmu_sc0005080.1_g000003 Rmu_sc0005080.1_g000006 Rmu_sc0005080.1_g000007 Rmu_sc0005080.1_g000008 Rmu_sc0005080.1_g000010 Rmu_sc0005080.1_g000011 Rmu_sc0005080.1_g000012 Rmu_sc0008707.1_g000001 Rmu_sc0008707.1_g000003 Rmu_sc0008832.1_g000002 Rmu_sc0010826.1_g000012 Rmu_sc0011315.1_g000009 Rmu_sc0019708.1_g000001
rosa_roxburghii Rroxscaffold_2G00108580 Rroxscaffold_7G00208920 Rroxscaffold_7G00209240 Rroxscaffold_7G00209250 Rroxscaffold_7G00209260 Rroxscaffold_7G00209270 Rroxscaffold_7G00209360 Rroxscaffold_7G00209380 Rroxscaffold_7G00209390 Rroxscaffold_7G00209430 Rroxscaffold_7G00209440 Rroxscaffold_7G00209510 Rroxscaffold_7G00209540
rosa_rugosa Rorug05G0532600 Rorug05G0562400 Rorug05G0562500 Rorug05G0563000 Rorug05G0563100 Rorug05G0563300 Rorug05G0563300 Rorug05G0563600 Rorug05G0563700 Rorug05G0563800 Rorug05G0564000 Rorug05G0564100 Rorug05G0564200 Rorug05G0564300 Rorug05G0564400 Rorug05G0564500 Rorug05G0564600 Rorug05G0564600 Rorug05G0568600 Rorug05G0568700
rosa_wichuraiana Rw6G004280 Rw6G004380 Rw6G006940 Rw6G006950 Rw6G006960 Rw6G007000 Rw6G007090 Rw6G007100 Rw6G007110 Rw6G007150 Rw6G007160 Rw6G007170 Rw6G007200 Rw6G007210 Rw6G007240 Rw6G007250 Rw6G007280 Rw6G007290 Rw6G007300 Rw6G007310 Rw6G007320 Rw6G007340 Rw6G007350 Rw6G007360 Rw6G007380 Rw6G007660 Rw6G018660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 109
AccI GTMKAC 1 cut(s) 42
AciI CCGC 2 cut(s) 107, 183
AclWI GGATC 3 cut(s) 293, 304, 339
AcoI YGGCCR 1 cut(s) 663
AcsI RAATTY 1 cut(s) 191
AcuI CTGAAG 1 cut(s) 198
AfaI GTAC 1 cut(s) 564
AgeI ACCGGT 1 cut(s) 469
AgsI TTSAA 7 cut(s) 101, 133, 335, 427, 607, 621, 673
AjnI CCWGG 2 cut(s) 322, 525
AluBI AGCT 7 cut(s) 118, 152, 352, 432, 463, 685, 713
AluI AGCT 7 cut(s) 118, 152, 352, 432, 463, 685, 713
Alw21I GWGCWC 1 cut(s) 465
Alw26I GTCTC 3 cut(s) 29, 253, 542
AlwI GGATC 3 cut(s) 293, 304, 339
AlwNI CAGNNNCTG 1 cut(s) 400
Ama87I CYCGRG 1 cut(s) 110
AoxI GGCC 2 cut(s) 523, 663
ApeKI GCWGC 3 cut(s) 185, 352, 713
ApoI RAATTY 1 cut(s) 191
AsiGI ACCGGT 1 cut(s) 469
Asp700I GAANNNNTTC 1 cut(s) 29
AsuHPI GGTGA 1 cut(s) 302
AvaI CYCGRG 1 cut(s) 110
BanII GRGCYC 1 cut(s) 465
Bbv12I GWGCWC 1 cut(s) 465
BbvI GCAGC 3 cut(s) 172, 339, 700
BciT130I CCWGG 2 cut(s) 324, 527
BcoDI GTCTC 3 cut(s) 29, 253, 542
BfaI CTAG 2 cut(s) 411, 763
BisI GCNGC 4 cut(s) 183, 186, 353, 714
BlsI GCNGC 4 cut(s) 184, 187, 354, 715
Bme1390I CCNGG 2 cut(s) 324, 527
BmeT110I CYCGRG 1 cut(s) 110
BmrFI CCNGG 2 cut(s) 324, 527
BpuEI CTTGAG 1 cut(s) 671
BsaJI CCNNGG 2 cut(s) 167, 203
BsaWI WCCGGW 1 cut(s) 469
BsaXI ACNNNNNCTCC 2 cut(s) 429, 459
Bse118I RCCGGY 1 cut(s) 469
Bse1I ACTGG 1 cut(s) 229
BseBI CCWGG 2 cut(s) 324, 527
BseDI CCNNGG 2 cut(s) 167, 203
BseMII CTCAG 2 cut(s) 407, 695
BseNI ACTGG 1 cut(s) 229
BseRI GAGGAG 2 cut(s) 128, 569
BseXI GCAGC 3 cut(s) 172, 339, 700
BseYI CCCAGC 3 cut(s) 54, 348, 716
BshFI GGCC 2 cut(s) 525, 665
BshTI ACCGGT 1 cut(s) 469
BsiHKAI GWGCWC 1 cut(s) 465
BsiHKCI CYCGRG 1 cut(s) 110
BsiSI CCGG 2 cut(s) 59, 470
BslFI GGGAC 1 cut(s) 235
BsmAI GTCTC 3 cut(s) 29, 253, 542
BsmFI GGGAC 1 cut(s) 235
BsnI GGCC 2 cut(s) 525, 665
BsoBI CYCGRG 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 465
Bsp143I GATC 3 cut(s) 298, 309, 344
BspACI CCGC 2 cut(s) 107, 183
BspANI GGCC 2 cut(s) 525, 665
BspCNI CTCAG 2 cut(s) 406, 694
BspPI GGATC 3 cut(s) 293, 304, 339
BspQI GCTCTTC 1 cut(s) 422
BsrBI CCGCTC 1 cut(s) 109
BsrFI RCCGGY 1 cut(s) 469
BsrI ACTGG 1 cut(s) 229
BssAI RCCGGY 1 cut(s) 469
BssECI CCNNGG 2 cut(s) 167, 203
BssMI GATC 3 cut(s) 298, 309, 344
BssT1I CCWWGG 1 cut(s) 167
Bst2UI CCWGG 2 cut(s) 324, 527
Bst4CI ACNGT 3 cut(s) 40, 283, 452
Bst6I CTCTTC 1 cut(s) 422
BstC8I GCNNGC 1 cut(s) 95
BstDEI CTNAG 2 cut(s) 393, 681
BstKTI GATC 3 cut(s) 301, 312, 347
BstMAI GTCTC 3 cut(s) 29, 253, 542
BstMBI GATC 3 cut(s) 298, 309, 344
BstMWI GCNNNNNNNGC 2 cut(s) 115, 710
BstNI CCWGG 2 cut(s) 324, 527
BstSCI CCNGG 2 cut(s) 322, 525
BstV1I GCAGC 3 cut(s) 172, 339, 700
BstX2I RGATCY 1 cut(s) 344
BstYI RGATCY 1 cut(s) 344
BsuRI GGCC 2 cut(s) 525, 665
Cac8I GCNNGC 1 cut(s) 95
CaiI CAGNNNCTG 1 cut(s) 400
Cfr10I RCCGGY 1 cut(s) 469
Csp6I GTAC 1 cut(s) 563
CspAI ACCGGT 1 cut(s) 469
CviAII CATG 2 cut(s) 218, 513
CviQI GTAC 1 cut(s) 563
DdeI CTNAG 2 cut(s) 393, 681
DpnI GATC 3 cut(s) 300, 311, 346
DpnII GATC 3 cut(s) 298, 309, 344
DraI TTTAAA 1 cut(s) 381
EaeI YGGCCR 1 cut(s) 663
Eam1104I CTCTTC 1 cut(s) 422
EarI CTCTTC 1 cut(s) 422
Ecl136II GAGCTC 1 cut(s) 463
Eco130I CCWWGG 1 cut(s) 167
Eco147I AGGCCT 1 cut(s) 525
Eco24I GRGCYC 1 cut(s) 465
Eco53kI GAGCTC 1 cut(s) 463
Eco57I CTGAAG 1 cut(s) 198
Eco88I CYCGRG 1 cut(s) 110
EcoICRI GAGCTC 1 cut(s) 463
EcoRII CCWGG 2 cut(s) 322, 525
EcoT14I CCWWGG 1 cut(s) 167
EcoT38I GRGCYC 1 cut(s) 465
ErhI CCWWGG 1 cut(s) 167
FaeI CATG 2 cut(s) 221, 516
FaqI GGGAC 1 cut(s) 235
FatI CATG 2 cut(s) 217, 512
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 4 cut(s) 183, 186, 353, 714
FriOI GRGCYC 1 cut(s) 465
Fsp4HI GCNGC 4 cut(s) 183, 186, 353, 714
FspBI CTAG 2 cut(s) 411, 763
GluI GCNGC 4 cut(s) 183, 186, 353, 714
GsaI CCCAGC 3 cut(s) 58, 352, 720
HaeIII GGCC 2 cut(s) 525, 665
HapII CCGG 2 cut(s) 59, 470
Hin1II CATG 2 cut(s) 221, 516
HincII GTYRAC 3 cut(s) 43, 70, 448
HindII GTYRAC 3 cut(s) 43, 70, 448
HinfI GANTC 6 cut(s) 44, 261, 391, 416, 617, 632
HpaI GTTAAC 1 cut(s) 448
HpaII CCGG 2 cut(s) 59, 470
HphI GGTGA 1 cut(s) 302
Hpy166II GTNNAC 3 cut(s) 43, 70, 448
Hpy188I TCNGA 2 cut(s) 204, 421
Hpy188III TCNNGA 2 cut(s) 34, 707
Hpy8I GTNNAC 3 cut(s) 43, 70, 448
HpyCH4III ACNGT 3 cut(s) 40, 283, 452
HpyCH4V TGCA 2 cut(s) 479, 540
HpyF10VI GCNNNNNNNGC 2 cut(s) 115, 710
HpyF3I CTNAG 2 cut(s) 393, 681
Hsp92II CATG 2 cut(s) 221, 516
KspAI GTTAAC 1 cut(s) 448
Kzo9I GATC 3 cut(s) 298, 309, 344
LguI GCTCTTC 1 cut(s) 422
LmnI GCTCC 1 cut(s) 115
Lsp1109I GCAGC 3 cut(s) 172, 339, 700
MaeI CTAG 2 cut(s) 411, 763
MalI GATC 3 cut(s) 300, 311, 346
MbiI CCGCTC 1 cut(s) 109
MboI GATC 3 cut(s) 298, 309, 344
MboII GAAGA 2 cut(s) 70, 439
MfeI CAATTG 1 cut(s) 585
MflI RGATCY 1 cut(s) 344
MhlI GDGCHC 1 cut(s) 465
MluCI AATT 5 cut(s) 62, 191, 335, 585, 673
MlyI GAGTC 3 cut(s) 38, 255, 385
MnlI CCTC 6 cut(s) 4, 106, 198, 547, 563, 685
MroXI GAANNNNTTC 1 cut(s) 29
MseI TTAA 2 cut(s) 380, 447
MspA1I CMGCKG 2 cut(s) 185, 352
MspI CCGG 2 cut(s) 59, 470
MspR9I CCNGG 2 cut(s) 324, 527
MunI CAATTG 1 cut(s) 585
MvaI CCWGG 2 cut(s) 324, 527
MwoI GCNNNNNNNGC 2 cut(s) 115, 710
NdeII GATC 3 cut(s) 298, 309, 344
NlaIII CATG 2 cut(s) 221, 516
PaeR7I CTCGAG 1 cut(s) 110
PceI AGGCCT 1 cut(s) 525
PciSI GCTCTTC 1 cut(s) 422
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PdmI GAANNNNTTC 1 cut(s) 29
PfeI GAWTC 3 cut(s) 416, 617, 632
PinAI ACCGGT 1 cut(s) 469
PkrI GCNGC 4 cut(s) 184, 187, 354, 715
PleI GAGTC 3 cut(s) 38, 255, 385
PpsI GAGTC 3 cut(s) 38, 255, 385
Psp124BI GAGCTC 1 cut(s) 465
Psp6I CCWGG 2 cut(s) 322, 525
PspFI CCCAGC 3 cut(s) 54, 348, 716
PspGI CCWGG 2 cut(s) 322, 525
PspXI VCTCGAGB 1 cut(s) 110
PstNI CAGNNNCTG 1 cut(s) 400
PsuI RGATCY 1 cut(s) 344
PvuII CAGCTG 1 cut(s) 352
RsaI GTAC 1 cut(s) 564
RsaNI GTAC 1 cut(s) 563
SacI GAGCTC 1 cut(s) 465
SalI GTCGAC 1 cut(s) 41
SapI GCTCTTC 1 cut(s) 422
SaqAI TTAA 2 cut(s) 380, 447
SatI GCNGC 4 cut(s) 183, 186, 353, 714
Sau3AI GATC 3 cut(s) 298, 309, 344
SchI GAGTC 3 cut(s) 38, 255, 385
ScrFI CCNGG 2 cut(s) 324, 527
SduI GDGCHC 1 cut(s) 465
Sfr274I CTCGAG 1 cut(s) 110
SlaI CTCGAG 1 cut(s) 110
SmlI CTYRAG 2 cut(s) 110, 686
SmoI CTYRAG 2 cut(s) 110, 686
Sse9I AATT 5 cut(s) 62, 191, 335, 585, 673
SseBI AGGCCT 1 cut(s) 525
SsiI CCGC 2 cut(s) 107, 183
SspI AATATT 1 cut(s) 725
SspMI CTAG 2 cut(s) 411, 763
SstI GAGCTC 1 cut(s) 465
StuI AGGCCT 1 cut(s) 525
StyD4I CCNGG 2 cut(s) 322, 525
StyI CCWWGG 1 cut(s) 167
TaaI ACNGT 3 cut(s) 40, 283, 452
TaqI TCGA 4 cut(s) 33, 42, 111, 465
TasI AATT 5 cut(s) 62, 191, 335, 585, 673
TatI WGTACW 1 cut(s) 562
TauI GCSGC 1 cut(s) 185
TfiI GAWTC 3 cut(s) 416, 617, 632
Tru1I TTAA 2 cut(s) 380, 447
Tru9I TTAA 2 cut(s) 380, 447
TseI GCWGC 3 cut(s) 185, 352, 713
TspDTI ATGAA 2 cut(s) 70, 206
XapI RAATTY 1 cut(s) 191
XhoI CTCGAG 1 cut(s) 110
XmiI GTMKAC 1 cut(s) 42
XmnI GAANNNNTTC 1 cut(s) 29
XspI CTAG 2 cut(s) 411, 763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.