Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001738.1

Orthogroup ID

OG0000135

Physical Location & Seq

Genomic Coordinates Reverse (-)

30716 .. 31312

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001738.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atgggaacccaaaaccaccaacttcatattgctttctttcccttcatggctcaaggccacatgatcccagccattcacatggccaagctatttgtttccagaggtctcgaagccaccatcatcacaacccctgcagatgcacctttcatccacaagaaaattgaaaactcaggtacccagatccacatttacacaatcaaagtgcctactgttgaggtgggattgcctgaaaactgtgagagctttcactctgctacttcgccggaaatgcaagccaagttcttcaaagccacaactttgcttggaccacagcttgagcagttcttgaagcaaaagagacccaattgccttgttgctgacatgttctttccgtgggctactgatgtggcatcaaagcttgggattccgatgctcattttccatggaattagttacttcgccttgtgcgctacactgtgtgtgcatcagcataagcctcacaaccaggtttcatctgattcagaaccttttgttattcctaacttacccgacaagatcgagctgaatagaaagaaaattcctgattttgttagggatggagctgagaatgaattttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0008194 GO:0009605 GO:0009607 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050896 GO:0051704 GO:0051707 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

198

Amino Acids

22.22

Weight (kDa)

6.82

Isoelectric Point (pI)

37.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15480 AT2G15480 AT2G15490 AT2G15490 AT2G15490 AT4G34131 AT4G34135 AT4G34135 AT4G34138
fragaria_vesca	FvH4_2g05600 FvH4_2g05601 FvH4_2g05602 FvH4_2g05603 FvH4_2g05604 FvH4_2g05630 FvH4_2g05660 FvH4_2g05662 FvH4_2g05663 FvH4_2g05671 FvH4_2g05680 FvH4_3g09760 FvH4_3g09780 FvH4_7g23180
malus_domestica	MD00G1046200.v1.1 MD04G1214200.v1.1 MD05G1085700.v1.1 MD05G1085800.v1.1 MD05G1086200.v1.1 MD05G1086300.v1.1 MD05G1091500.v1.1 MD07G1007400.v1.1 MD07G1007500.v1.1 MD07G1007600.v1.1 MD17G1100000.v1.1 MD17G1100300.v1.1
prunus_persica	Prupe.8G129800_v2.0.a1 Prupe.8G130100_v2.0.a1 Prupe.8G130200_v2.0.a1 Prupe.8G130300_v2.0.a1 Prupe.8G130400_v2.0.a1 Prupe.8G130500_v2.0.a1 Prupe.8G130600_v2.0.a1 Prupe.8G130700_v2.0.a1 Prupe.8G130800_v2.0.a1 Prupe.8G130900_v2.0.a1 Prupe.8G131000_v2.0.a1 Prupe.8G131000_v2.0.a1
pyrus_communis	pycom05g08530 pycom05g08560 pycom07g00600 pycom07g00610 pycom07g00620 pycom17g09520 pycom2675g00060
rosa_chinensis	RchiOBHm_Chr2g0111601 RchiOBHm_Chr2g0125751 RchiOBHm_Chr6g0248631 RchiOBHm_Chr6g0248721 RchiOBHm_Chr6g0255881 RchiOBHm_Chr6g0255911 RchiOBHm_Chr6g0255931 RchiOBHm_Chr6g0256041 RchiOBHm_Chr6g0256061 RchiOBHm_Chr6g0256081 RchiOBHm_Chr6g0256121 RchiOBHm_Chr6g0256131 RchiOBHm_Chr6g0256151 RchiOBHm_Chr6g0256161 RchiOBHm_Chr6g0256211 RchiOBHm_Chr6g0256221 RchiOBHm_Chr6g0256241 RchiOBHm_Chr6g0256251 RchiOBHm_Chr6g0256311 RchiOBHm_Chr6g0256331 RchiOBHm_Chr6g0256351 RchiOBHm_Chr6g0256361 RchiOBHm_Chr6g0256371 RchiOBHm_Chr6g0256411 RchiOBHm_Chr6g0256421 RchiOBHm_Chr6g0256431 RchiOBHm_Chr6g0256461 RchiOBHm_Chr6g0256471 RchiOBHm_Chr6g0256501 RchiOBHm_Chr6g0256511 RchiOBHm_Chr6g0256521 RchiOBHm_Chr6g0256531 RchiOBHm_Chr6g0256611 RchiOBHm_Chr6g0257761 RchiOBHm_Chr6g0276931
rosa_laevigata	RLG00000014720 RLG00000014721 RLG00000014763 RLG00000014766 RLG00000014768 RLG00000014769 RLG00000014770 RLG00000014774 RLG00000014776 RLG00000014777 RLG00000014778 RLG00000014781 RLG00000014782 RLG00000014783 RLG00000014786 RLG00000014787 RLG00000014788 RLG00000014789 RLG00000014790 RLG00000014791 RLG00000014793 RLG00000014795 RLG00000014799 RLG00000014800 RLG00000014803 RLG00000014805 RLG00000015130 RLG00000015139
rosa_multiflora	Rmu_co8160604.1_g000001 Rmu_sc0001598.1_g000016 Rmu_sc0001598.1_g000018 Rmu_sc0001598.1_g000024 Rmu_sc0001738.1_g000012 Rmu_sc0001738.1_g000013 Rmu_sc0001896.1_g000025 Rmu_sc0001896.1_g000029 Rmu_sc0001896.1_g000037 Rmu_sc0001896.1_g000039 Rmu_sc0002393.1_g000006 Rmu_sc0002553.1_g000039 Rmu_sc0004414.1_g000007 Rmu_sc0005080.1_g000001 Rmu_sc0005080.1_g000002 Rmu_sc0005080.1_g000003 Rmu_sc0005080.1_g000006 Rmu_sc0005080.1_g000007 Rmu_sc0005080.1_g000008 Rmu_sc0005080.1_g000010 Rmu_sc0005080.1_g000011 Rmu_sc0005080.1_g000012 Rmu_sc0008707.1_g000001 Rmu_sc0008707.1_g000003 Rmu_sc0008832.1_g000002 Rmu_sc0010826.1_g000012 Rmu_sc0011315.1_g000009 Rmu_sc0019708.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108580 Rroxscaffold_7G00208920 Rroxscaffold_7G00209240 Rroxscaffold_7G00209250 Rroxscaffold_7G00209260 Rroxscaffold_7G00209270 Rroxscaffold_7G00209360 Rroxscaffold_7G00209380 Rroxscaffold_7G00209390 Rroxscaffold_7G00209430 Rroxscaffold_7G00209440 Rroxscaffold_7G00209510 Rroxscaffold_7G00209540
rosa_rugosa	Rorug05G0532600 Rorug05G0562400 Rorug05G0562500 Rorug05G0563000 Rorug05G0563100 Rorug05G0563300 Rorug05G0563300 Rorug05G0563600 Rorug05G0563700 Rorug05G0563800 Rorug05G0564000 Rorug05G0564100 Rorug05G0564200 Rorug05G0564300 Rorug05G0564400 Rorug05G0564500 Rorug05G0564600 Rorug05G0564600 Rorug05G0568600 Rorug05G0568700
rosa_wichuraiana	Rw6G004280 Rw6G004380 Rw6G006940 Rw6G006950 Rw6G006960 Rw6G007000 Rw6G007090 Rw6G007100 Rw6G007110 Rw6G007150 Rw6G007160 Rw6G007170 Rw6G007200 Rw6G007210 Rw6G007240 Rw6G007250 Rw6G007280 Rw6G007290 Rw6G007300 Rw6G007310 Rw6G007320 Rw6G007340 Rw6G007350 Rw6G007360 Rw6G007380 Rw6G007660 Rw6G018660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	173
AccB1I	GGYRCC	1 cut(s)	173
AclWI	GGATC	2 cut(s)	58, 175
AcoI	YGGCCR	1 cut(s)	81
AcsI	RAATTY	2 cut(s)	555, 590
AdeI	CACNNNGTG	1 cut(s)	458
AfaI	GTAC	1 cut(s)	175
AflIII	ACRYGT	1 cut(s)	360
AgsI	TTSAA	3 cut(s)	164, 286, 328
AjnI	CCWGG	1 cut(s)	483
AluBI	AGCT	6 cut(s)	88, 243, 313, 397, 541, 581
AluI	AGCT	6 cut(s)	88, 243, 313, 397, 541, 581
Alw26I	GTCTC	2 cut(s)	110, 331
AlwI	GGATC	2 cut(s)	58, 175
AoxI	GGCC	2 cut(s)	55, 81
ApoI	RAATTY	2 cut(s)	555, 590
Asp718I	GGTACC	1 cut(s)	173
AspLEI	GCGC	1 cut(s)	449
AspS9I	GGNCC	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	305
BaeI	ACNNNNGTAYC	2 cut(s)	157, 190
BalI	TGGCCA	1 cut(s)	83
BanI	GGYRCC	1 cut(s)	173
BccI	CCATC	2 cut(s)	125, 569
BciT130I	CCWGG	1 cut(s)	485
BcoDI	GTCTC	2 cut(s)	110, 331
BfmI	CTRYAG	1 cut(s)	132
Bme1390I	CCNGG	1 cut(s)	485
Bme18I	GGWCC	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	305
BmiI	GGNNCC	2 cut(s)	7, 175
BmrFI	CCNGG	1 cut(s)	485
BmsI	GCATC	4 cut(s)	127, 398, 399, 472
BpuEI	CTTGAG	2 cut(s)	36, 335
BsaI	GGTCTC	2 cut(s)	110, 331
BsaJI	CCNNGG	2 cut(s)	371, 421
BseBI	CCWGG	1 cut(s)	485
BseDI	CCNNGG	2 cut(s)	371, 421
BseGI	GGATG	2 cut(s)	147, 580
BseMII	CTCAG	2 cut(s)	183, 573
BseYI	CCCAGC	1 cut(s)	67
BshFI	GGCC	2 cut(s)	57, 83
BshNI	GGYRCC	1 cut(s)	173
BsiSI	CCGG	1 cut(s)	263
BsmAI	GTCTC	2 cut(s)	110, 331
BsnI	GGCC	2 cut(s)	57, 83
Bso31I	GGTCTC	2 cut(s)	110, 331
Bsp143I	GATC	3 cut(s)	63, 180, 534
Bsp19I	CCATGG	1 cut(s)	421
BspANI	GGCC	2 cut(s)	57, 83
BspCNI	CTCAG	2 cut(s)	182, 574
BspLI	GGNNCC	2 cut(s)	7, 175
BspMAI	CTGCAG	1 cut(s)	136
BspPI	GGATC	2 cut(s)	58, 175
BspT107I	GGYRCC	1 cut(s)	173
BspTNI	GGTCTC	2 cut(s)	110, 331
BssECI	CCNNGG	2 cut(s)	371, 421
BssMI	GATC	3 cut(s)	63, 180, 534
BssT1I	CCWWGG	1 cut(s)	421
Bst2UI	CCWGG	1 cut(s)	485
Bst4CI	ACNGT	3 cut(s)	211, 236, 456
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	2 cut(s)	169, 582
BstDSI	CCRYGG	2 cut(s)	371, 421
BstF5I	GGATG	2 cut(s)	147, 580
BstHHI	GCGC	1 cut(s)	449
BstKTI	GATC	3 cut(s)	66, 183, 537
BstMAI	GTCTC	2 cut(s)	110, 331
BstMBI	GATC	3 cut(s)	63, 180, 534
BstMWI	GCNNNNNNNGC	2 cut(s)	268, 446
BstNI	CCWGG	1 cut(s)	485
BstNSI	RCATGY	1 cut(s)	364
BstSCI	CCNGG	1 cut(s)	483
BstSFI	CTRYAG	1 cut(s)	132
BstX2I	RGATCY	1 cut(s)	180
BstXI	CCANNNNNNTGG	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	180
BsuRI	GGCC	2 cut(s)	57, 83
BtgI	CCRYGG	2 cut(s)	371, 421
BtsCI	GGATG	2 cut(s)	147, 580
BtsIMutI	CAGTG	1 cut(s)	452
Cac8I	GCNNGC	1 cut(s)	273
CfoI	GCGC	1 cut(s)	449
Cfr13I	GGNCC	1 cut(s)	305
CsiI	ACCWGGT	1 cut(s)	483
Csp6I	GTAC	1 cut(s)	174
CviAII	CATG	5 cut(s)	46, 61, 79, 361, 422
CviQI	GTAC	1 cut(s)	174
DdeI	CTNAG	2 cut(s)	169, 582
DpnI	GATC	3 cut(s)	65, 182, 536
DpnII	GATC	3 cut(s)	63, 180, 534
DraIII	CACNNNGTG	1 cut(s)	458
EaeI	YGGCCR	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	421
Eco31I	GGTCTC	2 cut(s)	110, 331
Eco47I	GGWCC	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	483
EcoT14I	CCWWGG	1 cut(s)	421
ErhI	CCWWGG	1 cut(s)	421
FaeI	CATG	5 cut(s)	49, 64, 82, 364, 425
FaiI	YATR	7 cut(s)	27, 47, 62, 80, 362, 423, 471
FatI	CATG	5 cut(s)	45, 60, 78, 360, 421
FokI	GGATG	2 cut(s)	134, 587
GlaI	GCGC	1 cut(s)	448
GsaI	CCCAGC	1 cut(s)	71
HaeIII	GGCC	2 cut(s)	57, 83
HapII	CCGG	1 cut(s)	263
HhaI	GCGC	1 cut(s)	449
Hin1II	CATG	5 cut(s)	49, 64, 82, 364, 425
Hin6I	GCGC	1 cut(s)	447
HinP1I	GCGC	1 cut(s)	447
HindIII	AAGCTT	1 cut(s)	395
HinfI	GANTC	2 cut(s)	403, 497
HpaII	CCGG	1 cut(s)	263
Hpy188I	TCNGA	3 cut(s)	408, 496, 502
Hpy188III	TCNNGA	4 cut(s)	99, 107, 325, 560
HpyAV	CCTTC	1 cut(s)	52
HpyCH4III	ACNGT	3 cut(s)	211, 236, 456
HpyCH4V	TGCA	4 cut(s)	134, 140, 271, 463
HpyF10VI	GCNNNNNNNGC	2 cut(s)	268, 446
HpyF3I	CTNAG	2 cut(s)	169, 582
Hsp92II	CATG	5 cut(s)	49, 64, 82, 364, 425
HspAI	GCGC	1 cut(s)	447
KpnI	GGTACC	1 cut(s)	177
Kzo9I	GATC	3 cut(s)	63, 180, 534
LmnI	GCTCC	1 cut(s)	578
LweI	GCATC	4 cut(s)	127, 398, 399, 472
MabI	ACCWGGT	1 cut(s)	483
MaeIII	GTNAC	1 cut(s)	431
MalI	GATC	3 cut(s)	65, 182, 536
MboI	GATC	3 cut(s)	63, 180, 534
MboII	GAAGA	1 cut(s)	274
MfeI	CAATTG	1 cut(s)	343
MflI	RGATCY	1 cut(s)	180
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	5 cut(s)	159, 343, 426, 555, 590
MluNI	TGGCCA	1 cut(s)	83
MnlI	CCTC	3 cut(s)	95, 208, 486
Mox20I	TGGCCA	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	1 cut(s)	595
MslI	CAYNNNNRTG	1 cut(s)	77
Msp20I	TGGCCA	1 cut(s)	83
MspI	CCGG	1 cut(s)	263
MspR9I	CCNGG	1 cut(s)	485
MunI	CAATTG	1 cut(s)	343
MvaI	CCWGG	1 cut(s)	485
MwoI	GCNNNNNNNGC	2 cut(s)	268, 446
NcoI	CCATGG	1 cut(s)	421
NdeII	GATC	3 cut(s)	63, 180, 534
NlaIII	CATG	5 cut(s)	49, 64, 82, 364, 425
NlaIV	GGNNCC	2 cut(s)	7, 175
NspI	RCATGY	1 cut(s)	364
PciI	ACATGT	1 cut(s)	360
PfeI	GAWTC	2 cut(s)	403, 497
PscI	ACATGT	1 cut(s)	360
Psp6I	CCWGG	1 cut(s)	483
PspFI	CCCAGC	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	483
PspN4I	GGNNCC	2 cut(s)	7, 175
PspPI	GGNCC	1 cut(s)	305
PstI	CTGCAG	1 cut(s)	136
PsuI	RGATCY	1 cut(s)	180
RsaI	GTAC	1 cut(s)	175
RsaNI	GTAC	1 cut(s)	174
RseI	CAYNNNNRTG	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	595
Sau3AI	GATC	3 cut(s)	63, 180, 534
Sau96I	GGNCC	1 cut(s)	305
ScrFI	CCNGG	1 cut(s)	485
SexAI	ACCWGGT	1 cut(s)	483
SfaNI	GCATC	4 cut(s)	127, 398, 399, 472
SfcI	CTRYAG	1 cut(s)	132
SinI	GGWCC	1 cut(s)	305
SmiMI	CAYNNNNRTG	1 cut(s)	77
SmlI	CTYRAG	2 cut(s)	51, 314
SmoI	CTYRAG	2 cut(s)	51, 314
Sse9I	AATT	5 cut(s)	159, 343, 426, 555, 590
StyD4I	CCNGG	1 cut(s)	483
StyI	CCWWGG	1 cut(s)	421
TaaI	ACNGT	3 cut(s)	211, 236, 456
TaqI	TCGA	2 cut(s)	108, 537
TasI	AATT	5 cut(s)	159, 343, 426, 555, 590
TfiI	GAWTC	2 cut(s)	403, 497
Tru1I	TTAA	1 cut(s)	595
Tru9I	TTAA	1 cut(s)	595
TscAI	CASTG	1 cut(s)	459
TspDTI	ATGAA	4 cut(s)	14, 34, 136, 480
TspGWI	ACGGA	1 cut(s)	360
TspRI	CASTG	1 cut(s)	459
VpaK11BI	GGWCC	1 cut(s)	305
XapI	RAATTY	2 cut(s)	555, 590
XceI	RCATGY	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.