Rorug05G0564100

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
75551882 .. 75554276
2395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0564100.1

Sequence Viewer

Length: 804 bp
ATGTTCTCTTACTTTGCATTTCAGCAGGGTGGATACACTCATGACATTCATACGACTTTGCATAGGAGTAAAGTCGACTGTCCACAGCTTGAGGAAATGGCCACTGTCAGTTTTGATGGTGCTGTACTTGGACAAATTCCTGCAAGTATGTCATATCTTTGTGTTGGATCTTCTGGCAAGGCTGACAAGAAGAAAAAGAAGGGGAAAGATGCAAAAGTTGTTGCATATCTTTCAGACAAAGAAATCTTTTATGTCGAAGATAAAGTCGGAGGAGTTCAATTATGGGATAGTTTCAGTCACCCTAGCAATACAATCTTACTTGAACAAATGCTAGGATTCGATAGTAAATCTGGAACAAAGAATGTCATGACTTCCTGGAAAAGTGAGAATGATCCATCAACTGGGAGATATTTGGTTGGATTGACACCTGAGGCACCAACAAAAGTGTTCTTTTGGATCAATGGATCAATTCCTCACTGGAGGAGTGGGCATTGGGATAAATCAAAGTTCATTGGAAAAGCAGAGATGGATGATCAATATGGAAGTGGATTTAGTCTTAAAGAAGATAAAACACAGAGATTCAAATATGGATACAGGGATATACTGAAAGTTATGTCTGACCAAATGAAGAAAGCAAGGCATTTCCATTTCCTTGATGAAGGAGCTGGCGTAGTAAAGAGGAGGCCTTCTTTGATTCCAGTTCTTGGTTGCACTGATAACTTCTACAGTAAGGAATCAGCCATGAAGTTTATGAAACTTGGATCTAGGCCAGATACCTTTTACACTTCTGATGCTACAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

267

Amino Acids

30.16

Weight (kDa)

9.1

Isoelectric Point (pI)

31.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RED_N PF07808 6 - 66 9.1e-12 RED-like protein N-terminal region
B_lectin PF01453 65 - 127 1.5e-08 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000135)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15480 AT2G15480 AT2G15490 AT2G15490 AT2G15490 AT4G34131 AT4G34135 AT4G34135 AT4G34138
fragaria_vesca FvH4_2g05600 FvH4_2g05601 FvH4_2g05602 FvH4_2g05603 FvH4_2g05604 FvH4_2g05630 FvH4_2g05660 FvH4_2g05662 FvH4_2g05663 FvH4_2g05671 FvH4_2g05680 FvH4_3g09760 FvH4_3g09780 FvH4_7g23180
malus_domestica MD00G1046200.v1.1 MD04G1214200.v1.1 MD05G1085700.v1.1 MD05G1085800.v1.1 MD05G1086200.v1.1 MD05G1086300.v1.1 MD05G1091500.v1.1 MD07G1007400.v1.1 MD07G1007500.v1.1 MD07G1007600.v1.1 MD17G1100000.v1.1 MD17G1100300.v1.1
prunus_persica Prupe.8G129800_v2.0.a1 Prupe.8G130100_v2.0.a1 Prupe.8G130200_v2.0.a1 Prupe.8G130300_v2.0.a1 Prupe.8G130400_v2.0.a1 Prupe.8G130500_v2.0.a1 Prupe.8G130600_v2.0.a1 Prupe.8G130700_v2.0.a1 Prupe.8G130800_v2.0.a1 Prupe.8G130900_v2.0.a1 Prupe.8G131000_v2.0.a1 Prupe.8G131000_v2.0.a1
pyrus_communis pycom05g08530 pycom05g08560 pycom07g00600 pycom07g00610 pycom07g00620 pycom17g09520 pycom2675g00060
rosa_chinensis RchiOBHm_Chr2g0111601 RchiOBHm_Chr2g0125751 RchiOBHm_Chr6g0248631 RchiOBHm_Chr6g0248721 RchiOBHm_Chr6g0255881 RchiOBHm_Chr6g0255911 RchiOBHm_Chr6g0255931 RchiOBHm_Chr6g0256041 RchiOBHm_Chr6g0256061 RchiOBHm_Chr6g0256081 RchiOBHm_Chr6g0256121 RchiOBHm_Chr6g0256131 RchiOBHm_Chr6g0256151 RchiOBHm_Chr6g0256161 RchiOBHm_Chr6g0256211 RchiOBHm_Chr6g0256221 RchiOBHm_Chr6g0256241 RchiOBHm_Chr6g0256251 RchiOBHm_Chr6g0256311 RchiOBHm_Chr6g0256331 RchiOBHm_Chr6g0256351 RchiOBHm_Chr6g0256361 RchiOBHm_Chr6g0256371 RchiOBHm_Chr6g0256411 RchiOBHm_Chr6g0256421 RchiOBHm_Chr6g0256431 RchiOBHm_Chr6g0256461 RchiOBHm_Chr6g0256471 RchiOBHm_Chr6g0256501 RchiOBHm_Chr6g0256511 RchiOBHm_Chr6g0256521 RchiOBHm_Chr6g0256531 RchiOBHm_Chr6g0256611 RchiOBHm_Chr6g0257761 RchiOBHm_Chr6g0276931
rosa_laevigata RLG00000014720 RLG00000014721 RLG00000014763 RLG00000014766 RLG00000014768 RLG00000014769 RLG00000014770 RLG00000014774 RLG00000014776 RLG00000014777 RLG00000014778 RLG00000014781 RLG00000014782 RLG00000014783 RLG00000014786 RLG00000014787 RLG00000014788 RLG00000014789 RLG00000014790 RLG00000014791 RLG00000014793 RLG00000014795 RLG00000014799 RLG00000014800 RLG00000014803 RLG00000014805 RLG00000015130 RLG00000015139
rosa_multiflora Rmu_co8160604.1_g000001 Rmu_sc0001598.1_g000016 Rmu_sc0001598.1_g000018 Rmu_sc0001598.1_g000024 Rmu_sc0001738.1_g000012 Rmu_sc0001738.1_g000013 Rmu_sc0001896.1_g000025 Rmu_sc0001896.1_g000029 Rmu_sc0001896.1_g000037 Rmu_sc0001896.1_g000039 Rmu_sc0002393.1_g000006 Rmu_sc0002553.1_g000039 Rmu_sc0004414.1_g000007 Rmu_sc0005080.1_g000001 Rmu_sc0005080.1_g000002 Rmu_sc0005080.1_g000003 Rmu_sc0005080.1_g000006 Rmu_sc0005080.1_g000007 Rmu_sc0005080.1_g000008 Rmu_sc0005080.1_g000010 Rmu_sc0005080.1_g000011 Rmu_sc0005080.1_g000012 Rmu_sc0008707.1_g000001 Rmu_sc0008707.1_g000003 Rmu_sc0008832.1_g000002 Rmu_sc0010826.1_g000012 Rmu_sc0011315.1_g000009 Rmu_sc0019708.1_g000001
rosa_roxburghii Rroxscaffold_2G00108580 Rroxscaffold_7G00208920 Rroxscaffold_7G00209240 Rroxscaffold_7G00209250 Rroxscaffold_7G00209260 Rroxscaffold_7G00209270 Rroxscaffold_7G00209360 Rroxscaffold_7G00209380 Rroxscaffold_7G00209390 Rroxscaffold_7G00209430 Rroxscaffold_7G00209440 Rroxscaffold_7G00209510 Rroxscaffold_7G00209540
rosa_rugosa Rorug05G0532600 Rorug05G0562400 Rorug05G0562500 Rorug05G0563000 Rorug05G0563100 Rorug05G0563300 Rorug05G0563300 Rorug05G0563600 Rorug05G0563700 Rorug05G0563800 Rorug05G0564000 Rorug05G0564100 Rorug05G0564200 Rorug05G0564300 Rorug05G0564400 Rorug05G0564500 Rorug05G0564600 Rorug05G0564600 Rorug05G0568600 Rorug05G0568700
rosa_wichuraiana Rw6G004280 Rw6G004380 Rw6G006940 Rw6G006950 Rw6G006960 Rw6G007000 Rw6G007090 Rw6G007100 Rw6G007110 Rw6G007150 Rw6G007160 Rw6G007170 Rw6G007200 Rw6G007210 Rw6G007240 Rw6G007250 Rw6G007280 Rw6G007290 Rw6G007300 Rw6G007310 Rw6G007320 Rw6G007340 Rw6G007350 Rw6G007360 Rw6G007380 Rw6G007660 Rw6G018660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 433
AccB7I CCANNNNNTGG 2 cut(s) 401, 704
AccI GTMKAC 1 cut(s) 75
AclWI GGATC 5 cut(s) 175, 386, 464, 472, 769
AcoI YGGCCR 1 cut(s) 99
AcsI RAATTY 1 cut(s) 135
AfaI GTAC 1 cut(s) 126
AfiI CCNNNNNNNGG 2 cut(s) 401, 704
AgsI TTSAA 3 cut(s) 278, 323, 583
AjnI CCWGG 1 cut(s) 374
AluBI AGCT 2 cut(s) 88, 665
AluI AGCT 2 cut(s) 88, 665
AlwI GGATC 5 cut(s) 175, 386, 464, 472, 769
AoxI GGCC 3 cut(s) 99, 683, 767
ApoI RAATTY 1 cut(s) 135
ArsI GACNNNNNNTTYG 2 cut(s) 249, 281
AsuHPI GGTGA 1 cut(s) 290
AxyI CCTNAGG 1 cut(s) 429
BalI TGGCCA 1 cut(s) 101
BanI GGYRCC 1 cut(s) 433
BccI CCATC 3 cut(s) 110, 403, 520
BciT130I CCWGG 1 cut(s) 376
BciVI GTATCC 2 cut(s) 26, 584
BclI TGATCA 1 cut(s) 532
BfaI CTAG 3 cut(s) 303, 332, 765
BfmI CTRYAG 1 cut(s) 724
BfuI GTATCC 2 cut(s) 26, 584
Bme1390I CCNGG 1 cut(s) 376
BmiI GGNNCC 1 cut(s) 435
BmrFI CCNGG 1 cut(s) 376
BmrI ACTGGG 1 cut(s) 411
BmsI GCATC 2 cut(s) 199, 781
BmuI ACTGGG 1 cut(s) 411
BpmI CTGGAG 1 cut(s) 499
BpuEI CTTGAG 1 cut(s) 110
BsaXI ACNNNNNCTCC 2 cut(s) 654, 684
Bsc4I CCNNNNNNNGG 2 cut(s) 401, 704
Bse1I ACTGG 3 cut(s) 406, 482, 698
Bse21I CCTNAGG 1 cut(s) 429
BseBI CCWGG 1 cut(s) 376
BseGI GGATG 1 cut(s) 535
BseLI CCNNNNNNNGG 2 cut(s) 401, 704
BseMII CTCAG 1 cut(s) 420
BseNI ACTGG 3 cut(s) 406, 482, 698
BseRI GAGGAG 3 cut(s) 285, 496, 694
BshFI GGCC 3 cut(s) 101, 685, 769
BshNI GGYRCC 1 cut(s) 433
BslI CCNNNNNNNGG 2 cut(s) 401, 704
BsnI GGCC 3 cut(s) 101, 685, 769
Bsp143I GATC 6 cut(s) 167, 391, 456, 464, 532, 761
BspANI GGCC 3 cut(s) 101, 685, 769
BspCNI CTCAG 1 cut(s) 421
BspHI TCATGA 2 cut(s) 40, 366
BspLI GGNNCC 1 cut(s) 435
BspPI GGATC 5 cut(s) 175, 386, 464, 472, 769
BspT107I GGYRCC 1 cut(s) 433
BsrI ACTGG 3 cut(s) 406, 482, 698
BssMI GATC 6 cut(s) 167, 391, 456, 464, 532, 761
Bst2UI CCWGG 1 cut(s) 376
Bst4CI ACNGT 3 cut(s) 80, 106, 728
BstC8I GCNNGC 1 cut(s) 667
BstDEI CTNAG 1 cut(s) 429
BstF5I GGATG 1 cut(s) 535
BstKTI GATC 6 cut(s) 170, 394, 459, 467, 535, 764
BstMBI GATC 6 cut(s) 167, 391, 456, 464, 532, 761
BstNI CCWGG 1 cut(s) 376
BstSCI CCNGG 1 cut(s) 374
BstSFI CTRYAG 1 cut(s) 724
BstX2I RGATCY 2 cut(s) 167, 761
BstYI RGATCY 2 cut(s) 167, 761
Bsu36I CCTNAGG 1 cut(s) 429
BsuI GTATCC 2 cut(s) 26, 584
BsuRI GGCC 3 cut(s) 101, 685, 769
BtsCI GGATG 1 cut(s) 535
BtsIMutI CAGTG 3 cut(s) 102, 475, 711
Cac8I GCNNGC 1 cut(s) 667
CciI TCATGA 2 cut(s) 40, 366
Csp6I GTAC 1 cut(s) 125
CviAII CATG 3 cut(s) 41, 367, 742
CviJI RGCY 7 cut(s) 88, 101, 182, 665, 685, 740, 769
CviKI_1 RGCY 7 cut(s) 88, 101, 182, 665, 685, 740, 769
CviQI GTAC 1 cut(s) 125
DdeI CTNAG 1 cut(s) 429
DpnI GATC 6 cut(s) 169, 393, 458, 466, 534, 763
DpnII GATC 6 cut(s) 167, 391, 456, 464, 532, 761
EaeI YGGCCR 1 cut(s) 99
Eco147I AGGCCT 1 cut(s) 685
Eco81I CCTNAGG 1 cut(s) 429
EcoRII CCWGG 1 cut(s) 374
FaeI CATG 3 cut(s) 44, 370, 745
FatI CATG 3 cut(s) 40, 366, 741
FbaI TGATCA 1 cut(s) 532
FblI GTMKAC 1 cut(s) 75
FokI GGATG 1 cut(s) 542
FspBI CTAG 3 cut(s) 303, 332, 765
GsuI CTGGAG 1 cut(s) 499
HaeIII GGCC 3 cut(s) 101, 685, 769
Hin1II CATG 3 cut(s) 44, 370, 745
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 4 cut(s) 336, 579, 694, 734
HphI GGTGA 1 cut(s) 290
Hpy166II GTNNAC 2 cut(s) 76, 83
Hpy188I TCNGA 4 cut(s) 235, 269, 619, 790
Hpy188III TCNNGA 3 cut(s) 41, 351, 367
Hpy8I GTNNAC 2 cut(s) 76, 83
HpyAV CCTTC 3 cut(s) 193, 653, 696
HpyCH4III ACNGT 3 cut(s) 80, 106, 728
HpyCH4V TGCA 6 cut(s) 17, 61, 143, 212, 224, 711
HpyF3I CTNAG 1 cut(s) 429
Hsp92II CATG 3 cut(s) 44, 370, 745
Ksp22I TGATCA 1 cut(s) 532
Kzo9I GATC 6 cut(s) 167, 391, 456, 464, 532, 761
LmnI GCTCC 1 cut(s) 662
LweI GCATC 2 cut(s) 199, 781
MaeI CTAG 3 cut(s) 303, 332, 765
MaeIII GTNAC 1 cut(s) 296
MalI GATC 6 cut(s) 169, 393, 458, 466, 534, 763
MboI GATC 6 cut(s) 167, 391, 456, 464, 532, 761
MboII GAAGA 5 cut(s) 162, 202, 269, 575, 640
MflI RGATCY 2 cut(s) 167, 761
MlsI TGGCCA 1 cut(s) 101
MluCI AATT 3 cut(s) 135, 278, 468
MluNI TGGCCA 1 cut(s) 101
MmeI TCCRAC 3 cut(s) 145, 247, 397
MnlI CCTC 7 cut(s) 85, 263, 424, 474, 483, 672, 675
Mox20I TGGCCA 1 cut(s) 101
MscI TGGCCA 1 cut(s) 101
MseI TTAA 1 cut(s) 558
Msp20I TGGCCA 1 cut(s) 101
MspR9I CCNGG 1 cut(s) 376
MvaI CCWGG 1 cut(s) 376
NdeII GATC 6 cut(s) 167, 391, 456, 464, 532, 761
NlaIII CATG 3 cut(s) 44, 370, 745
NlaIV GGNNCC 1 cut(s) 435
NmuCI GTSAC 1 cut(s) 296
PagI TCATGA 2 cut(s) 40, 366
PceI AGGCCT 1 cut(s) 685
PfeI GAWTC 4 cut(s) 336, 579, 694, 734
PflMI CCANNNNNTGG 2 cut(s) 401, 704
PfoI TCCNGGA 1 cut(s) 374
Psp6I CCWGG 1 cut(s) 374
PspGI CCWGG 1 cut(s) 374
PspN4I GGNNCC 1 cut(s) 435
PsuI RGATCY 2 cut(s) 167, 761
RsaI GTAC 1 cut(s) 126
RsaNI GTAC 1 cut(s) 125
SalI GTCGAC 1 cut(s) 74
SaqAI TTAA 1 cut(s) 558
Sau3AI GATC 6 cut(s) 167, 391, 456, 464, 532, 761
ScrFI CCNGG 1 cut(s) 376
SetI ASST 5 cut(s) 90, 430, 667, 779, 803
SfaNI GCATC 2 cut(s) 199, 781
SfcI CTRYAG 1 cut(s) 724
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 3 cut(s) 135, 278, 468
SseBI AGGCCT 1 cut(s) 685
SspMI CTAG 3 cut(s) 303, 332, 765
StuI AGGCCT 1 cut(s) 685
StyD4I CCNGG 1 cut(s) 374
TaaI ACNGT 3 cut(s) 80, 106, 728
TaqI TCGA 3 cut(s) 75, 255, 339
TasI AATT 3 cut(s) 135, 278, 468
TatI WGTACW 1 cut(s) 124
TfiI GAWTC 4 cut(s) 336, 579, 694, 734
Tru1I TTAA 1 cut(s) 558
Tru9I TTAA 1 cut(s) 558
TscAI CASTG 3 cut(s) 109, 482, 718
TseFI GTSAC 1 cut(s) 296
Tsp45I GTSAC 1 cut(s) 296
TspDTI ATGAA 6 cut(s) 38, 499, 641, 672, 758, 767
TspRI CASTG 3 cut(s) 109, 482, 718
Van91I CCANNNNNTGG 2 cut(s) 401, 704
XapI RAATTY 1 cut(s) 135
XmiI GTMKAC 1 cut(s) 75
XspI CTAG 3 cut(s) 303, 332, 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.