RchiOBHm_Chr6g0256311

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000135
Physical Location & Seq
Reverse (-)
11552036 .. 11553181
1146 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22992

Sequence Viewer

Length: 1146 bp
ATGAAGGGAAAACTCATGGAAGCTACCACTCTGCTTGAACCAAAGGTTGAGCAAATTCTAGACCAACATCGTCCCCATTGCCTTGTTGCAGATGCTGTATTTCATTGGGCTACAAATGTTGCTGCCAAGTTTAGGATTCCGAGGCTCGTCTTTCATGGAGCTGGTTTTTTCCCATTGTGTGCTTCATTGAGTGTGATGTTGTACCAACCTCACAAGAATGTTTCATCTGATTCAGAATCTTTTGTTATTCCTAATCTCCCACATGAGATCAAGAGCACAAGAAACCAAGTACCGGCTTTTCTTAATGTGGATTCCAAAACAGAACTCTTCAAGCTGGTCAAAGCATCTATGGAGGTTGACGAAAGGAGCTTTGGGATTCTTGTTAACAGCTTCTACGAACTTGAACCAGAGTATGCAGATCACTATAGGAAGGTGTTTGGGAGGAAGTCATGGCATATCAGCCCGGTTTCTTTATGCAACAAGGCAGAAGAAGATAAATTAGCAAGGGGAGAGGAAGGCTCTGCTGATGGAGTTCATGAATGCTTTGATTGGCTTAATACTAAGGAACACAATTCGGTTGTTTATATCTATTTTGGAAGCCTTACCAATTTCAATGATGCTCAACTTGTAGAAATTGCCTTGGCTCTTGAGTCTTCTCATCAGCAATTCATTTGGGTTGTCAGGAAAGAAAAGAATGCTAAAGGAGAGTGGTTGCCTGATGAAGGATTTGAGCAGAGGTTAGAAGATAAGGGATTGATAATAAGAGGCTGGGCTCCCCAACTACTAATTCTTGAACATGAAGCAGTTGGGGCCTTTATGACTCATTGTGGGTGGAACTCTATCCTTGAAGGAGTGGCTGCTAGGGTGCCAATGATCACCTGGCCTGTGTCCGCAGAGCAGTTCTACAATGAGAAGTTGGTGATTCAGTTGCTTAGGATTGGGGTTGTTGTTGGGGCTGAAAAATGGGATACATTTGAGGACGATAGTCTGAAGAGCGAAGCCAACGTGAAGATGGAGGCCATAAAGAATGCTGTGACTGAAATCATGGTGGGTGATGAAGCAAAGGAAATGAGAAGCAGAGTTAAAGAGCTTGGAGAGATAGGAAGCAAGGCTGTTGAAGAAGGTGGTTCATCGTTCTCCGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

381

Amino Acids

43.01

Weight (kDa)

5.35

Isoelectric Point (pI)

35.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 181 - 306 3.6e-18 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000135)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15480 AT2G15480 AT2G15490 AT2G15490 AT2G15490 AT4G34131 AT4G34135 AT4G34135 AT4G34138
fragaria_vesca FvH4_2g05600 FvH4_2g05601 FvH4_2g05602 FvH4_2g05603 FvH4_2g05604 FvH4_2g05630 FvH4_2g05660 FvH4_2g05662 FvH4_2g05663 FvH4_2g05671 FvH4_2g05680 FvH4_3g09760 FvH4_3g09780 FvH4_7g23180
malus_domestica MD00G1046200.v1.1 MD04G1214200.v1.1 MD05G1085700.v1.1 MD05G1085800.v1.1 MD05G1086200.v1.1 MD05G1086300.v1.1 MD05G1091500.v1.1 MD07G1007400.v1.1 MD07G1007500.v1.1 MD07G1007600.v1.1 MD17G1100000.v1.1 MD17G1100300.v1.1
prunus_persica Prupe.8G129800_v2.0.a1 Prupe.8G130100_v2.0.a1 Prupe.8G130200_v2.0.a1 Prupe.8G130300_v2.0.a1 Prupe.8G130400_v2.0.a1 Prupe.8G130500_v2.0.a1 Prupe.8G130600_v2.0.a1 Prupe.8G130700_v2.0.a1 Prupe.8G130800_v2.0.a1 Prupe.8G130900_v2.0.a1 Prupe.8G131000_v2.0.a1 Prupe.8G131000_v2.0.a1
pyrus_communis pycom05g08530 pycom05g08560 pycom07g00600 pycom07g00610 pycom07g00620 pycom17g09520 pycom2675g00060
rosa_chinensis RchiOBHm_Chr2g0111601 RchiOBHm_Chr2g0125751 RchiOBHm_Chr6g0248631 RchiOBHm_Chr6g0248721 RchiOBHm_Chr6g0255881 RchiOBHm_Chr6g0255911 RchiOBHm_Chr6g0255931 RchiOBHm_Chr6g0256041 RchiOBHm_Chr6g0256061 RchiOBHm_Chr6g0256081 RchiOBHm_Chr6g0256121 RchiOBHm_Chr6g0256131 RchiOBHm_Chr6g0256151 RchiOBHm_Chr6g0256161 RchiOBHm_Chr6g0256211 RchiOBHm_Chr6g0256221 RchiOBHm_Chr6g0256241 RchiOBHm_Chr6g0256251 RchiOBHm_Chr6g0256311 RchiOBHm_Chr6g0256331 RchiOBHm_Chr6g0256351 RchiOBHm_Chr6g0256361 RchiOBHm_Chr6g0256371 RchiOBHm_Chr6g0256411 RchiOBHm_Chr6g0256421 RchiOBHm_Chr6g0256431 RchiOBHm_Chr6g0256461 RchiOBHm_Chr6g0256471 RchiOBHm_Chr6g0256501 RchiOBHm_Chr6g0256511 RchiOBHm_Chr6g0256521 RchiOBHm_Chr6g0256531 RchiOBHm_Chr6g0256611 RchiOBHm_Chr6g0257761 RchiOBHm_Chr6g0276931
rosa_laevigata RLG00000014720 RLG00000014721 RLG00000014763 RLG00000014766 RLG00000014768 RLG00000014769 RLG00000014770 RLG00000014774 RLG00000014776 RLG00000014777 RLG00000014778 RLG00000014781 RLG00000014782 RLG00000014783 RLG00000014786 RLG00000014787 RLG00000014788 RLG00000014789 RLG00000014790 RLG00000014791 RLG00000014793 RLG00000014795 RLG00000014799 RLG00000014800 RLG00000014803 RLG00000014805 RLG00000015130 RLG00000015139
rosa_multiflora Rmu_co8160604.1_g000001 Rmu_sc0001598.1_g000016 Rmu_sc0001598.1_g000018 Rmu_sc0001598.1_g000024 Rmu_sc0001738.1_g000012 Rmu_sc0001738.1_g000013 Rmu_sc0001896.1_g000025 Rmu_sc0001896.1_g000029 Rmu_sc0001896.1_g000037 Rmu_sc0001896.1_g000039 Rmu_sc0002393.1_g000006 Rmu_sc0002553.1_g000039 Rmu_sc0004414.1_g000007 Rmu_sc0005080.1_g000001 Rmu_sc0005080.1_g000002 Rmu_sc0005080.1_g000003 Rmu_sc0005080.1_g000006 Rmu_sc0005080.1_g000007 Rmu_sc0005080.1_g000008 Rmu_sc0005080.1_g000010 Rmu_sc0005080.1_g000011 Rmu_sc0005080.1_g000012 Rmu_sc0008707.1_g000001 Rmu_sc0008707.1_g000003 Rmu_sc0008832.1_g000002 Rmu_sc0010826.1_g000012 Rmu_sc0011315.1_g000009 Rmu_sc0019708.1_g000001
rosa_roxburghii Rroxscaffold_2G00108580 Rroxscaffold_7G00208920 Rroxscaffold_7G00209240 Rroxscaffold_7G00209250 Rroxscaffold_7G00209260 Rroxscaffold_7G00209270 Rroxscaffold_7G00209360 Rroxscaffold_7G00209380 Rroxscaffold_7G00209390 Rroxscaffold_7G00209430 Rroxscaffold_7G00209440 Rroxscaffold_7G00209510 Rroxscaffold_7G00209540
rosa_rugosa Rorug05G0532600 Rorug05G0562400 Rorug05G0562500 Rorug05G0563000 Rorug05G0563100 Rorug05G0563300 Rorug05G0563300 Rorug05G0563600 Rorug05G0563700 Rorug05G0563800 Rorug05G0564000 Rorug05G0564100 Rorug05G0564200 Rorug05G0564300 Rorug05G0564400 Rorug05G0564500 Rorug05G0564600 Rorug05G0564600 Rorug05G0568600 Rorug05G0568700
rosa_wichuraiana Rw6G004280 Rw6G004380 Rw6G006940 Rw6G006950 Rw6G006960 Rw6G007000 Rw6G007090 Rw6G007100 Rw6G007110 Rw6G007150 Rw6G007160 Rw6G007170 Rw6G007200 Rw6G007210 Rw6G007240 Rw6G007250 Rw6G007280 Rw6G007290 Rw6G007300 Rw6G007310 Rw6G007320 Rw6G007340 Rw6G007350 Rw6G007360 Rw6G007380 Rw6G007660 Rw6G018660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 865
AciI CCGC 1 cut(s) 891
AcsI RAATTY 1 cut(s) 54
AcuI CTGAAG 1 cut(s) 1010
AfaI GTAC 2 cut(s) 203, 291
AfiI CCNNNNNNNGG 3 cut(s) 132, 292, 722
AgsI TTSAA 7 cut(s) 38, 331, 404, 613, 794, 848, 1118
AjnI CCWGG 1 cut(s) 878
AjuI GAANNNNNNNTTGG 4 cut(s) 354, 386, 771, 803
AluBI AGCT 6 cut(s) 23, 161, 334, 369, 390, 1090
AluI AGCT 6 cut(s) 23, 161, 334, 369, 390, 1090
Alw21I GWGCWC 1 cut(s) 278
AlwNI CAGNNNCTG 1 cut(s) 95
AoxI GGCC 3 cut(s) 810, 881, 1017
ApeKI GCWGC 2 cut(s) 122, 857
ApoI RAATTY 1 cut(s) 54
AspS9I GGNCC 1 cut(s) 810
AsuC2I CCSGG 1 cut(s) 464
AsuHPI GGTGA 3 cut(s) 868, 931, 1064
BanI GGYRCC 1 cut(s) 865
BanII GRGCYC 1 cut(s) 775
BbsI GAAGAC 1 cut(s) 645
Bbv12I GWGCWC 1 cut(s) 278
BbvI GCAGC 2 cut(s) 109, 844
BccI CCATC 2 cut(s) 521, 1006
BciT130I CCWGG 1 cut(s) 880
BciVI GTATCC 1 cut(s) 961
BclI TGATCA 1 cut(s) 873
BcnI CCSGG 1 cut(s) 464
BfaI CTAG 2 cut(s) 59, 861
BfmI CTRYAG 1 cut(s) 424
BfuI GTATCC 1 cut(s) 961
BisI GCNGC 2 cut(s) 123, 858
BlsI GCNGC 2 cut(s) 124, 859
Bme1390I CCNGG 2 cut(s) 464, 880
BmgT120I GGNCC 1 cut(s) 810
BmiI GGNNCC 3 cut(s) 774, 811, 867
BmrFI CCNGG 2 cut(s) 464, 880
BmsI GCATC 3 cut(s) 82, 353, 607
BoxI GACNNNNGTC 1 cut(s) 984
BpiI GAAGAC 1 cut(s) 645
BplI GAGNNNNNCTC 2 cut(s) 503, 535
Bpu10I CCTNAGC 1 cut(s) 932
BpuEI CTTGAG 1 cut(s) 668
BpuMI CCSGG 1 cut(s) 464
BsaJI CCNNGG 2 cut(s) 140, 639
Bsc4I CCNNNNNNNGG 3 cut(s) 132, 292, 722
Bse118I RCCGGY 1 cut(s) 292
Bse3DI GCAATG 1 cut(s) 76
BseBI CCWGG 1 cut(s) 880
BseDI CCNNGG 2 cut(s) 140, 639
BseLI CCNNNNNNNGG 3 cut(s) 132, 292, 722
BseMI GCAATG 1 cut(s) 76
BseXI GCAGC 2 cut(s) 109, 844
BseYI CCCAGC 1 cut(s) 768
BshFI GGCC 3 cut(s) 812, 883, 1019
BshNI GGYRCC 1 cut(s) 865
BsiHKAI GWGCWC 1 cut(s) 278
BsiSI CCGG 2 cut(s) 293, 464
BslFI GGGAC 1 cut(s) 57
BslI CCNNNNNNNGG 3 cut(s) 132, 292, 722
BsmFI GGGAC 1 cut(s) 57
BsmI GAATGC 3 cut(s) 545, 700, 1033
BsnI GGCC 3 cut(s) 812, 883, 1019
Bsp1286I GDGCHC 2 cut(s) 278, 775
Bsp143I GATC 3 cut(s) 267, 418, 873
BspACI CCGC 1 cut(s) 891
BspANI GGCC 3 cut(s) 812, 883, 1019
BspHI TCATGA 1 cut(s) 535
BspLI GGNNCC 3 cut(s) 774, 811, 867
BspQI GCTCTTC 1 cut(s) 986
BspT107I GGYRCC 1 cut(s) 865
BsrDI GCAATG 1 cut(s) 76
BsrFI RCCGGY 1 cut(s) 292
BssAI RCCGGY 1 cut(s) 292
BssECI CCNNGG 2 cut(s) 140, 639
BssMI GATC 3 cut(s) 267, 418, 873
BssT1I CCWWGG 1 cut(s) 639
Bst2UI CCWGG 1 cut(s) 880
Bst6I CTCTTC 2 cut(s) 332, 986
BstDEI CTNAG 2 cut(s) 561, 932
BstENI CCTNNNNNAGG 1 cut(s) 720
BstKTI GATC 3 cut(s) 270, 421, 876
BstMBI GATC 3 cut(s) 267, 418, 873
BstMWI GCNNNNNNNGC 1 cut(s) 809
BstNI CCWGG 1 cut(s) 880
BstPAI GACNNNNGTC 1 cut(s) 984
BstSCI CCNGG 2 cut(s) 462, 878
BstSFI CTRYAG 1 cut(s) 424
BstV1I GCAGC 2 cut(s) 109, 844
BstV2I GAAGAC 1 cut(s) 645
BsuI GTATCC 1 cut(s) 961
BsuRI GGCC 3 cut(s) 812, 883, 1019
CaiI CAGNNNCTG 1 cut(s) 95
CciI TCATGA 1 cut(s) 535
Cfr10I RCCGGY 1 cut(s) 292
Cfr13I GGNCC 1 cut(s) 810
Csp6I GTAC 2 cut(s) 202, 290
CspCI CAANNNNNGTGG 2 cut(s) 16, 51
CviAII CATG 7 cut(s) 16, 155, 263, 450, 536, 797, 1045
CviQI GTAC 2 cut(s) 202, 290
DdeI CTNAG 2 cut(s) 561, 932
DpnI GATC 3 cut(s) 269, 420, 875
DpnII GATC 3 cut(s) 267, 418, 873
Eam1104I CTCTTC 2 cut(s) 332, 986
EarI CTCTTC 2 cut(s) 332, 986
Eco130I CCWWGG 1 cut(s) 639
Eco24I GRGCYC 1 cut(s) 775
Eco57I CTGAAG 1 cut(s) 1010
EcoNI CCTNNNNNAGG 1 cut(s) 720
EcoO109I RGGNCCY 1 cut(s) 810
EcoRII CCWGG 1 cut(s) 878
EcoT14I CCWWGG 1 cut(s) 639
EcoT38I GRGCYC 1 cut(s) 775
ErhI CCWWGG 1 cut(s) 639
FaeI CATG 7 cut(s) 19, 158, 266, 453, 539, 800, 1048
FaqI GGGAC 1 cut(s) 57
FatI CATG 7 cut(s) 15, 154, 262, 449, 535, 796, 1044
FbaI TGATCA 1 cut(s) 873
Fnu4HI GCNGC 2 cut(s) 123, 858
FriOI GRGCYC 1 cut(s) 775
Fsp4HI GCNGC 2 cut(s) 123, 858
FspBI CTAG 2 cut(s) 59, 861
GluI GCNGC 2 cut(s) 123, 858
GsaI CCCAGC 1 cut(s) 772
HaeIII GGCC 3 cut(s) 812, 883, 1019
HapII CCGG 2 cut(s) 293, 464
Hin1II CATG 7 cut(s) 19, 158, 266, 453, 539, 800, 1048
HincII GTYRAC 2 cut(s) 358, 385
HindII GTYRAC 2 cut(s) 358, 385
HinfI GANTC 8 cut(s) 136, 230, 236, 311, 376, 650, 820, 922
HpaI GTTAAC 1 cut(s) 385
HpaII CCGG 2 cut(s) 293, 464
HphI GGTGA 3 cut(s) 868, 931, 1064
Hpy166II GTNNAC 2 cut(s) 358, 385
Hpy188I TCNGA 5 cut(s) 141, 229, 235, 990, 1141
Hpy188III TCNNGA 6 cut(s) 59, 271, 536, 647, 682, 791
Hpy8I GTNNAC 2 cut(s) 358, 385
HpyAV CCTTC 5 cut(s) 424, 509, 716, 842, 1115
HpyCH4IV ACGT 1 cut(s) 1005
HpyCH4V TGCA 3 cut(s) 89, 416, 477
HpyF10VI GCNNNNNNNGC 1 cut(s) 809
HpyF3I CTNAG 2 cut(s) 561, 932
HpySE526I ACGT 1 cut(s) 1005
Hsp92II CATG 7 cut(s) 19, 158, 266, 453, 539, 800, 1048
Ksp22I TGATCA 1 cut(s) 873
KspAI GTTAAC 1 cut(s) 385
Kzo9I GATC 3 cut(s) 267, 418, 873
LguI GCTCTTC 1 cut(s) 986
LmnI GCTCC 3 cut(s) 158, 366, 778
Lsp1109I GCAGC 2 cut(s) 109, 844
LweI GCATC 3 cut(s) 82, 353, 607
MaeI CTAG 2 cut(s) 59, 861
MaeII ACGT 1 cut(s) 1005
MaeIII GTNAC 1 cut(s) 1033
MalI GATC 3 cut(s) 269, 420, 875
MboI GATC 3 cut(s) 267, 418, 873
MboII GAAGA 8 cut(s) 319, 500, 503, 645, 755, 1003, 1021, 1130
MhlI GDGCHC 2 cut(s) 278, 775
MluCI AATT 7 cut(s) 54, 497, 571, 607, 633, 665, 786
MlyI GAGTC 2 cut(s) 659, 814
MnlI CCTC 9 cut(s) 135, 219, 346, 435, 505, 729, 758, 970, 1009
MseI TTAA 5 cut(s) 303, 384, 555, 1083, 1144
MslI CAYNNNNRTG 1 cut(s) 216
MspI CCGG 2 cut(s) 293, 464
MspR9I CCNGG 2 cut(s) 464, 880
Mva1269I GAATGC 3 cut(s) 545, 700, 1033
MvaI CCWGG 1 cut(s) 880
MwoI GCNNNNNNNGC 1 cut(s) 809
NciI CCSGG 1 cut(s) 464
NdeII GATC 3 cut(s) 267, 418, 873
NlaIII CATG 7 cut(s) 19, 158, 266, 453, 539, 800, 1048
NlaIV GGNNCC 3 cut(s) 774, 811, 867
NmuCI GTSAC 1 cut(s) 1033
PagI TCATGA 1 cut(s) 535
PciSI GCTCTTC 1 cut(s) 986
PctI GAATGC 3 cut(s) 545, 700, 1033
PfeI GAWTC 6 cut(s) 136, 230, 236, 311, 376, 922
PkrI GCNGC 2 cut(s) 124, 859
PleI GAGTC 2 cut(s) 658, 814
PpsI GAGTC 2 cut(s) 658, 814
PshAI GACNNNNGTC 1 cut(s) 984
Psp6I CCWGG 1 cut(s) 878
PspFI CCCAGC 1 cut(s) 768
PspGI CCWGG 1 cut(s) 878
PspN4I GGNNCC 3 cut(s) 774, 811, 867
PspPI GGNCC 1 cut(s) 810
PstNI CAGNNNCTG 1 cut(s) 95
RsaI GTAC 2 cut(s) 203, 291
RsaNI GTAC 2 cut(s) 202, 290
RseI CAYNNNNRTG 1 cut(s) 216
SapI GCTCTTC 1 cut(s) 986
SaqAI TTAA 5 cut(s) 303, 384, 555, 1083, 1144
SatI GCNGC 2 cut(s) 123, 858
Sau3AI GATC 3 cut(s) 267, 418, 873
Sau96I GGNCC 1 cut(s) 810
SchI GAGTC 2 cut(s) 659, 814
ScrFI CCNGG 2 cut(s) 464, 880
SduI GDGCHC 2 cut(s) 278, 775
SfaNI GCATC 3 cut(s) 82, 353, 607
SfcI CTRYAG 1 cut(s) 424
SmiMI CAYNNNNRTG 1 cut(s) 216
SmlI CTYRAG 1 cut(s) 647
SmoI CTYRAG 1 cut(s) 647
Sse9I AATT 7 cut(s) 54, 497, 571, 607, 633, 665, 786
SsiI CCGC 1 cut(s) 891
SspMI CTAG 2 cut(s) 59, 861
StyD4I CCNGG 2 cut(s) 462, 878
StyI CCWWGG 1 cut(s) 639
TaiI ACGT 1 cut(s) 1008
TasI AATT 7 cut(s) 54, 497, 571, 607, 633, 665, 786
TfiI GAWTC 6 cut(s) 136, 230, 236, 311, 376, 922
Tru1I TTAA 5 cut(s) 303, 384, 555, 1083, 1144
Tru9I TTAA 5 cut(s) 303, 384, 555, 1083, 1144
TseFI GTSAC 1 cut(s) 1033
TseI GCWGC 2 cut(s) 122, 857
Tsp45I GTSAC 1 cut(s) 1033
XagI CCTNNNNNAGG 1 cut(s) 720
XapI RAATTY 1 cut(s) 54
XbaI TCTAGA 1 cut(s) 58
XcmI CCANNNNNNNNNTGG 2 cut(s) 876, 1009
XspI CTAG 2 cut(s) 59, 861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.