RchiOBHm_Chr6g0256061

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000135
Physical Location & Seq
Reverse (-)
11443911 .. 11444195
285 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22967

Sequence Viewer

Length: 285 bp
ATGGTCAATTTCCTAGAAATTGCAGTTGGTCTTGAAGCTTCTAGACAAGACTGCATTTGGGTTTTTGAGAAAATAGATAATTTCATTACTTATCCATGGCCAGAAGGCACGTATATAAGATGCTATCTCATACGGTCATTATCAATTTGTTCTTCAACACCAGTGTCATCATCTTCAATTCTCTATAGTGTCTGTCTTGCTATGGAAACTAAATCCTGTGAGAAGCTTAATATCTTGTTCTTCCTATACATGGCTCAAGGCCACATCATACCCTCACACATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.75

Weight (kDa)

5.52

Isoelectric Point (pI)

59.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000135)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15480 AT2G15480 AT2G15490 AT2G15490 AT2G15490 AT4G34131 AT4G34135 AT4G34135 AT4G34138
fragaria_vesca FvH4_2g05600 FvH4_2g05601 FvH4_2g05602 FvH4_2g05603 FvH4_2g05604 FvH4_2g05630 FvH4_2g05660 FvH4_2g05662 FvH4_2g05663 FvH4_2g05671 FvH4_2g05680 FvH4_3g09760 FvH4_3g09780 FvH4_7g23180
malus_domestica MD00G1046200.v1.1 MD04G1214200.v1.1 MD05G1085700.v1.1 MD05G1085800.v1.1 MD05G1086200.v1.1 MD05G1086300.v1.1 MD05G1091500.v1.1 MD07G1007400.v1.1 MD07G1007500.v1.1 MD07G1007600.v1.1 MD17G1100000.v1.1 MD17G1100300.v1.1
prunus_persica Prupe.8G129800_v2.0.a1 Prupe.8G130100_v2.0.a1 Prupe.8G130200_v2.0.a1 Prupe.8G130300_v2.0.a1 Prupe.8G130400_v2.0.a1 Prupe.8G130500_v2.0.a1 Prupe.8G130600_v2.0.a1 Prupe.8G130700_v2.0.a1 Prupe.8G130800_v2.0.a1 Prupe.8G130900_v2.0.a1 Prupe.8G131000_v2.0.a1 Prupe.8G131000_v2.0.a1
pyrus_communis pycom05g08530 pycom05g08560 pycom07g00600 pycom07g00610 pycom07g00620 pycom17g09520 pycom2675g00060
rosa_chinensis RchiOBHm_Chr2g0111601 RchiOBHm_Chr2g0125751 RchiOBHm_Chr6g0248631 RchiOBHm_Chr6g0248721 RchiOBHm_Chr6g0255881 RchiOBHm_Chr6g0255911 RchiOBHm_Chr6g0255931 RchiOBHm_Chr6g0256041 RchiOBHm_Chr6g0256061 RchiOBHm_Chr6g0256081 RchiOBHm_Chr6g0256121 RchiOBHm_Chr6g0256131 RchiOBHm_Chr6g0256151 RchiOBHm_Chr6g0256161 RchiOBHm_Chr6g0256211 RchiOBHm_Chr6g0256221 RchiOBHm_Chr6g0256241 RchiOBHm_Chr6g0256251 RchiOBHm_Chr6g0256311 RchiOBHm_Chr6g0256331 RchiOBHm_Chr6g0256351 RchiOBHm_Chr6g0256361 RchiOBHm_Chr6g0256371 RchiOBHm_Chr6g0256411 RchiOBHm_Chr6g0256421 RchiOBHm_Chr6g0256431 RchiOBHm_Chr6g0256461 RchiOBHm_Chr6g0256471 RchiOBHm_Chr6g0256501 RchiOBHm_Chr6g0256511 RchiOBHm_Chr6g0256521 RchiOBHm_Chr6g0256531 RchiOBHm_Chr6g0256611 RchiOBHm_Chr6g0257761 RchiOBHm_Chr6g0276931
rosa_laevigata RLG00000014720 RLG00000014721 RLG00000014763 RLG00000014766 RLG00000014768 RLG00000014769 RLG00000014770 RLG00000014774 RLG00000014776 RLG00000014777 RLG00000014778 RLG00000014781 RLG00000014782 RLG00000014783 RLG00000014786 RLG00000014787 RLG00000014788 RLG00000014789 RLG00000014790 RLG00000014791 RLG00000014793 RLG00000014795 RLG00000014799 RLG00000014800 RLG00000014803 RLG00000014805 RLG00000015130 RLG00000015139
rosa_multiflora Rmu_co8160604.1_g000001 Rmu_sc0001598.1_g000016 Rmu_sc0001598.1_g000018 Rmu_sc0001598.1_g000024 Rmu_sc0001738.1_g000012 Rmu_sc0001738.1_g000013 Rmu_sc0001896.1_g000025 Rmu_sc0001896.1_g000029 Rmu_sc0001896.1_g000037 Rmu_sc0001896.1_g000039 Rmu_sc0002393.1_g000006 Rmu_sc0002553.1_g000039 Rmu_sc0004414.1_g000007 Rmu_sc0005080.1_g000001 Rmu_sc0005080.1_g000002 Rmu_sc0005080.1_g000003 Rmu_sc0005080.1_g000006 Rmu_sc0005080.1_g000007 Rmu_sc0005080.1_g000008 Rmu_sc0005080.1_g000010 Rmu_sc0005080.1_g000011 Rmu_sc0005080.1_g000012 Rmu_sc0008707.1_g000001 Rmu_sc0008707.1_g000003 Rmu_sc0008832.1_g000002 Rmu_sc0010826.1_g000012 Rmu_sc0011315.1_g000009 Rmu_sc0019708.1_g000001
rosa_roxburghii Rroxscaffold_2G00108580 Rroxscaffold_7G00208920 Rroxscaffold_7G00209240 Rroxscaffold_7G00209250 Rroxscaffold_7G00209260 Rroxscaffold_7G00209270 Rroxscaffold_7G00209360 Rroxscaffold_7G00209380 Rroxscaffold_7G00209390 Rroxscaffold_7G00209430 Rroxscaffold_7G00209440 Rroxscaffold_7G00209510 Rroxscaffold_7G00209540
rosa_rugosa Rorug05G0532600 Rorug05G0562400 Rorug05G0562500 Rorug05G0563000 Rorug05G0563100 Rorug05G0563300 Rorug05G0563300 Rorug05G0563600 Rorug05G0563700 Rorug05G0563800 Rorug05G0564000 Rorug05G0564100 Rorug05G0564200 Rorug05G0564300 Rorug05G0564400 Rorug05G0564500 Rorug05G0564600 Rorug05G0564600 Rorug05G0568600 Rorug05G0568700
rosa_wichuraiana Rw6G004280 Rw6G004380 Rw6G006940 Rw6G006950 Rw6G006960 Rw6G007000 Rw6G007090 Rw6G007100 Rw6G007110 Rw6G007150 Rw6G007160 Rw6G007170 Rw6G007200 Rw6G007210 Rw6G007240 Rw6G007250 Rw6G007280 Rw6G007290 Rw6G007300 Rw6G007310 Rw6G007320 Rw6G007340 Rw6G007350 Rw6G007360 Rw6G007380 Rw6G007660 Rw6G018660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 98
AfiI CCNNNNNNNGG 1 cut(s) 250
AgsI TTSAA 3 cut(s) 35, 156, 177
AjuI GAANNNNNNNTTGG 2 cut(s) 9, 41
AluBI AGCT 2 cut(s) 38, 226
AluI AGCT 2 cut(s) 38, 226
AoxI GGCC 2 cut(s) 98, 259
BalI TGGCCA 1 cut(s) 100
BfaI CTAG 2 cut(s) 14, 42
BfmI CTRYAG 1 cut(s) 184
BmsI GCATC 1 cut(s) 110
BpuEI CTTGAG 1 cut(s) 240
BsaAI YACGTR 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 95
Bsc4I CCNNNNNNNGG 1 cut(s) 250
Bse1I ACTGG 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 95
BseLI CCNNNNNNNGG 1 cut(s) 250
BseNI ACTGG 1 cut(s) 161
BshFI GGCC 2 cut(s) 100, 261
BslI CCNNNNNNNGG 1 cut(s) 250
BsnI GGCC 2 cut(s) 100, 261
Bsp19I CCATGG 1 cut(s) 95
BspANI GGCC 2 cut(s) 100, 261
BsrI ACTGG 1 cut(s) 161
BssECI CCNNGG 1 cut(s) 95
BssT1I CCWWGG 1 cut(s) 95
Bst4CI ACNGT 1 cut(s) 135
BstBAI YACGTR 1 cut(s) 111
BstDSI CCRYGG 1 cut(s) 95
BstSFI CTRYAG 1 cut(s) 184
BsuRI GGCC 2 cut(s) 100, 261
BtgI CCRYGG 1 cut(s) 95
BtsIMutI CAGTG 1 cut(s) 168
CviAII CATG 2 cut(s) 96, 250
CviJI RGCY 5 cut(s) 38, 100, 226, 254, 261
CviKI_1 RGCY 5 cut(s) 38, 100, 226, 254, 261
EaeI YGGCCR 1 cut(s) 98
Eco130I CCWWGG 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 95
ErhI CCWWGG 1 cut(s) 95
FaeI CATG 2 cut(s) 99, 253
FatI CATG 2 cut(s) 95, 249
FspBI CTAG 2 cut(s) 14, 42
HaeIII GGCC 2 cut(s) 100, 261
Hin1II CATG 2 cut(s) 99, 253
HindIII AAGCTT 2 cut(s) 36, 224
Hpy188III TCNNGA 2 cut(s) 32, 42
HpyAV CCTTC 1 cut(s) 98
HpyCH4III ACNGT 1 cut(s) 135
HpyCH4IV ACGT 1 cut(s) 110
HpyCH4V TGCA 2 cut(s) 23, 54
HpySE526I ACGT 1 cut(s) 110
Hsp92II CATG 2 cut(s) 99, 253
LpnPI CCDG 3 cut(s) 114, 174, 229
LweI GCATC 1 cut(s) 110
MaeI CTAG 2 cut(s) 14, 42
MaeII ACGT 1 cut(s) 110
MboII GAAGA 3 cut(s) 144, 165, 232
MlsI TGGCCA 1 cut(s) 100
MluCI AATT 5 cut(s) 7, 18, 79, 144, 177
MluNI TGGCCA 1 cut(s) 100
MnlI CCTC 1 cut(s) 283
Mox20I TGGCCA 1 cut(s) 100
MscI TGGCCA 1 cut(s) 100
MseI TTAA 1 cut(s) 228
Msp20I TGGCCA 1 cut(s) 100
NcoI CCATGG 1 cut(s) 95
NlaIII CATG 2 cut(s) 99, 253
Ppu21I YACGTR 1 cut(s) 111
SaqAI TTAA 1 cut(s) 228
SetI ASST 3 cut(s) 40, 113, 228
SfaNI GCATC 1 cut(s) 110
SfcI CTRYAG 1 cut(s) 184
SmlI CTYRAG 1 cut(s) 255
SmoI CTYRAG 1 cut(s) 255
Sse9I AATT 5 cut(s) 7, 18, 79, 144, 177
SspMI CTAG 2 cut(s) 14, 42
StyI CCWWGG 1 cut(s) 95
TaaI ACNGT 1 cut(s) 135
TaiI ACGT 1 cut(s) 113
TasI AATT 5 cut(s) 7, 18, 79, 144, 177
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TscAI CASTG 1 cut(s) 168
TspDTI ATGAA 1 cut(s) 73
TspRI CASTG 1 cut(s) 168
XbaI TCTAGA 1 cut(s) 41
XspI CTAG 2 cut(s) 14, 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.