Rorug05G0563000

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000135
Physical Location & Seq
Reverse (-)
75458404 .. 75460756
2353 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0563000.1

Sequence Viewer

Length: 1797 bp
ATGATTCGAACAACTGCTTCTTCTTACTCTCATTGCTGCAGCAGCAGCACAAGAGGTATGCCATTTCTTCGCTTGACTCCTCTCGTTCTCTTCGTTGTCAACAACTACTTGGCTTTGTTTCATTCTCAATCCTCAAGCCCAACCAAACCCAGAGAAACCCATCTCGGAAATCGGCTCAATGTTGAGGACGCCTTGAAGGTGTTCGATGAAATGCTTCACTCGCGTCCTCTGCCTTCTGTTTTTCTTTTCACTCACATATTGGCCCAACTTGTCAAATTGAAACACTATTCTGCACCCATCCCTCTCTTTAAACAAATGCTTATGTGTCGAATTGTTCCTAATCACTATACTCTTAACATTATCATCAACTGCTATTGCCGTTTGAATCAAATGGGGTTTGGCTTATCTGTCTTGGGTAATTTCTTCAAATTGGGTCTTCAGCCAACTGTCACCACCTTCAATACTCTAATCAACGGCTTTGTTCTCCACAATCAAGTGCCTGAGGCAGCGCGAATTTTCAGCAAAATGGTGGAGGCAGGTCATTGTAAGCCCAATGTGGTTACTTTCTCCACACTAATTAAGGGCTTTTGCATGATGGGAAACAACACTGCGGCTGTTCAACTACTTAGGAAGATGGAAGAAAGAGGGTGCGAGCCGGACATAGTTACCTTTAACACCATCATTGACAGTCTTTGCAAGGATACACTTGTTGTAGATGCAATGAACCTCTTCTCAGAAATGATTAGTAGAGGTATTGCTCCGGATGTTGTTACTTACACCTCTTTGATTCAAGGAGTTTGCAATATACGCCAGTGGAAACAAGCTACAAGGTTGTTGAATGAAATGGTGAGTAAAGGTATCTTTCCAGATGTAGTCACCTTCAGTGTCTTGGTTGATACACTTTGTAAGGAAGGGATGGTTGTTGAAGCCAAAAGTGTGGTTGACATGATGATTCAAAGAGGTATTCAGCCTGATACGATTACATACAGCTCACTTATGGACGGTTACTGTTTGCGAGGAGAAATGGACGAGGCGAAACGAGTTTTTGATCTAATGGTTAGCAAGGGCTCCTTGGTTAATGTTCATAGTTGTAACATATTGATAAATGGATACTGTAAGCAGAAAAAGATCGGTGAGGCCAATAAGGTTTTTCAGGAAATGACTGGTTGGGAGCTTGTTCCTGATACCATTACTTATAACACTCTTATTGATGGTTTTTACAAAGCAGGGAGAATACAAGAGGCACAAAAGTTGTTCTCTGAGATGCAAGGTTGTGGCCAACTTCCAGATGTTCAAACTTATAATATTTTAGTTAATGGCCTGTGTAACAACCAACAACTTTCTTCAGCACTAGAATTGCTTAGAGAGATAGAAGGCAACAAGTTGGAACTAGATATTATAGTTTACAATACTATCATTGAAGGTTTCTGCAAAGCTGGGAAAATGGGTTCTGCTATAGATGTCTTCTCTGGTTTGTCATCAAAGCATCTTCAACCTGATGTGCGGACGTATAATATAATGATTCTTGGATTTTGTAAAGGAGGCCTATTAAGTGAAGCTGAAAAATTGTTTACAGAAATGAAGGAGAAAGGCTGTTCTCCAAATGGCTGTACCTATAACACAATTATCCGAGGTTTTATGAATAACAATGAGACATCAAGGGCTACAGGACTTATTCAAGAAATGCTTGAGAGGGGTTTCTCTGCGGATGCATCAACTATGGACTTGATTGTTGATTTATTGTCAAAGGATACAGTAGATCCTGTATTAGTGGCATGGCTTAAAGATTCAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

598

Amino Acids

66.7

Weight (kDa)

6.82

Isoelectric Point (pI)

32.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 78 - 127 2.5e-07 PPR repeat family
PPR_3 PF13812 138 - 195 2.9e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 145 - 177 1.3e-06 PPR repeat
PPR_2 PF13041 148 - 197 5.1e-14 PPR repeat family
PPR_1 PF12854 182 - 213 1.7e-11 PPR repeat
PPR_3 PF13812 183 - 229 3.3e-11 Pentatricopeptide repeat domain
PPR_2 PF13041 184 - 233 6.8e-17 PPR repeat family
PPR PF01535 187 - 217 6.7e-06 PPR repeat
PPR_1 PF12854 215 - 247 5.3e-13 PPR repeat
PPR_2 PF13041 219 - 268 2.2e-18 PPR repeat family
PPR PF01535 222 - 252 2e-06 PPR repeat
PPR_long PF17177 237 - 336 1.6e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 243 - 301 6.5e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 250 - 283 4.3e-09 PPR repeat
PPR_2 PF13041 254 - 303 1.4e-17 PPR repeat family
MRP-S27 PF10037 258 - 320 5.7e-06 Mitochondrial 28S ribosomal protein S27
PPR_1 PF12854 285 - 317 6.6e-10 PPR repeat
PPR_2 PF13041 298 - 337 4.5e-10 PPR repeat family
PPR_1 PF12854 320 - 353 4.8e-12 PPR repeat
PPR PF01535 327 - 356 3.7e-08 PPR repeat
PPR_1 PF12854 359 - 388 2.8e-06 PPR repeat
PPR_2 PF13041 360 - 408 1.6e-16 PPR repeat family
PPR PF01535 363 - 388 5.1e-06 PPR repeat
PPR_3 PF13812 382 - 439 2.9e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 391 - 423 4.2e-12 PPR repeat
TPR_24 PF23276 393 - 490 2.1e-09 Fungal tetratrico peptide repeats
PPR_2 PF13041 394 - 443 3.6e-19 PPR repeat family
PPR PF01535 397 - 426 1.3e-08 PPR repeat
PPR_1 PF12854 426 - 457 1.2e-08 PPR repeat
PPR_3 PF13812 453 - 512 6.4e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 462 - 489 2e-08 PPR repeat
PPR_2 PF13041 465 - 513 2.2e-15 PPR repeat family
PPR_1 PF12854 495 - 528 1.5e-12 PPR repeat
PPR PF01535 503 - 532 6.9e-10 PPR repeat
PPR_2 PF13041 504 - 546 9.2e-15 PPR repeat family
PPR_3 PF13812 518 - 546 1.2e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 530 - 562 7.1e-06 PPR repeat
PPR_2 PF13041 537 - 581 4.1e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000135)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15480 AT2G15480 AT2G15490 AT2G15490 AT2G15490 AT4G34131 AT4G34135 AT4G34135 AT4G34138
fragaria_vesca FvH4_2g05600 FvH4_2g05601 FvH4_2g05602 FvH4_2g05603 FvH4_2g05604 FvH4_2g05630 FvH4_2g05660 FvH4_2g05662 FvH4_2g05663 FvH4_2g05671 FvH4_2g05680 FvH4_3g09760 FvH4_3g09780 FvH4_7g23180
malus_domestica MD00G1046200.v1.1 MD04G1214200.v1.1 MD05G1085700.v1.1 MD05G1085800.v1.1 MD05G1086200.v1.1 MD05G1086300.v1.1 MD05G1091500.v1.1 MD07G1007400.v1.1 MD07G1007500.v1.1 MD07G1007600.v1.1 MD17G1100000.v1.1 MD17G1100300.v1.1
prunus_persica Prupe.8G129800_v2.0.a1 Prupe.8G130100_v2.0.a1 Prupe.8G130200_v2.0.a1 Prupe.8G130300_v2.0.a1 Prupe.8G130400_v2.0.a1 Prupe.8G130500_v2.0.a1 Prupe.8G130600_v2.0.a1 Prupe.8G130700_v2.0.a1 Prupe.8G130800_v2.0.a1 Prupe.8G130900_v2.0.a1 Prupe.8G131000_v2.0.a1 Prupe.8G131000_v2.0.a1
pyrus_communis pycom05g08530 pycom05g08560 pycom07g00600 pycom07g00610 pycom07g00620 pycom17g09520 pycom2675g00060
rosa_chinensis RchiOBHm_Chr2g0111601 RchiOBHm_Chr2g0125751 RchiOBHm_Chr6g0248631 RchiOBHm_Chr6g0248721 RchiOBHm_Chr6g0255881 RchiOBHm_Chr6g0255911 RchiOBHm_Chr6g0255931 RchiOBHm_Chr6g0256041 RchiOBHm_Chr6g0256061 RchiOBHm_Chr6g0256081 RchiOBHm_Chr6g0256121 RchiOBHm_Chr6g0256131 RchiOBHm_Chr6g0256151 RchiOBHm_Chr6g0256161 RchiOBHm_Chr6g0256211 RchiOBHm_Chr6g0256221 RchiOBHm_Chr6g0256241 RchiOBHm_Chr6g0256251 RchiOBHm_Chr6g0256311 RchiOBHm_Chr6g0256331 RchiOBHm_Chr6g0256351 RchiOBHm_Chr6g0256361 RchiOBHm_Chr6g0256371 RchiOBHm_Chr6g0256411 RchiOBHm_Chr6g0256421 RchiOBHm_Chr6g0256431 RchiOBHm_Chr6g0256461 RchiOBHm_Chr6g0256471 RchiOBHm_Chr6g0256501 RchiOBHm_Chr6g0256511 RchiOBHm_Chr6g0256521 RchiOBHm_Chr6g0256531 RchiOBHm_Chr6g0256611 RchiOBHm_Chr6g0257761 RchiOBHm_Chr6g0276931
rosa_laevigata RLG00000014720 RLG00000014721 RLG00000014763 RLG00000014766 RLG00000014768 RLG00000014769 RLG00000014770 RLG00000014774 RLG00000014776 RLG00000014777 RLG00000014778 RLG00000014781 RLG00000014782 RLG00000014783 RLG00000014786 RLG00000014787 RLG00000014788 RLG00000014789 RLG00000014790 RLG00000014791 RLG00000014793 RLG00000014795 RLG00000014799 RLG00000014800 RLG00000014803 RLG00000014805 RLG00000015130 RLG00000015139
rosa_multiflora Rmu_co8160604.1_g000001 Rmu_sc0001598.1_g000016 Rmu_sc0001598.1_g000018 Rmu_sc0001598.1_g000024 Rmu_sc0001738.1_g000012 Rmu_sc0001738.1_g000013 Rmu_sc0001896.1_g000025 Rmu_sc0001896.1_g000029 Rmu_sc0001896.1_g000037 Rmu_sc0001896.1_g000039 Rmu_sc0002393.1_g000006 Rmu_sc0002553.1_g000039 Rmu_sc0004414.1_g000007 Rmu_sc0005080.1_g000001 Rmu_sc0005080.1_g000002 Rmu_sc0005080.1_g000003 Rmu_sc0005080.1_g000006 Rmu_sc0005080.1_g000007 Rmu_sc0005080.1_g000008 Rmu_sc0005080.1_g000010 Rmu_sc0005080.1_g000011 Rmu_sc0005080.1_g000012 Rmu_sc0008707.1_g000001 Rmu_sc0008707.1_g000003 Rmu_sc0008832.1_g000002 Rmu_sc0010826.1_g000012 Rmu_sc0011315.1_g000009 Rmu_sc0019708.1_g000001
rosa_roxburghii Rroxscaffold_2G00108580 Rroxscaffold_7G00208920 Rroxscaffold_7G00209240 Rroxscaffold_7G00209250 Rroxscaffold_7G00209260 Rroxscaffold_7G00209270 Rroxscaffold_7G00209360 Rroxscaffold_7G00209380 Rroxscaffold_7G00209390 Rroxscaffold_7G00209430 Rroxscaffold_7G00209440 Rroxscaffold_7G00209510 Rroxscaffold_7G00209540
rosa_rugosa Rorug05G0532600 Rorug05G0562400 Rorug05G0562500 Rorug05G0563000 Rorug05G0563100 Rorug05G0563300 Rorug05G0563300 Rorug05G0563600 Rorug05G0563700 Rorug05G0563800 Rorug05G0564000 Rorug05G0564100 Rorug05G0564200 Rorug05G0564300 Rorug05G0564400 Rorug05G0564500 Rorug05G0564600 Rorug05G0564600 Rorug05G0568600 Rorug05G0568700
rosa_wichuraiana Rw6G004280 Rw6G004380 Rw6G006940 Rw6G006950 Rw6G006960 Rw6G007000 Rw6G007090 Rw6G007100 Rw6G007110 Rw6G007150 Rw6G007160 Rw6G007170 Rw6G007200 Rw6G007210 Rw6G007240 Rw6G007250 Rw6G007280 Rw6G007290 Rw6G007300 Rw6G007310 Rw6G007320 Rw6G007340 Rw6G007350 Rw6G007360 Rw6G007380 Rw6G007660 Rw6G018660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1197, 1302
Acc36I ACCTGC 1 cut(s) 527
AccII CGCG 2 cut(s) 223, 511
AccIII TCCGGA 1 cut(s) 760
AciI CCGC 3 cut(s) 611, 1504, 1706
AclWI GGATC 1 cut(s) 1754
AcoI YGGCCR 1 cut(s) 1276
AcsI RAATTY 1 cut(s) 513
AcuI CTGAAG 3 cut(s) 422, 865, 1329
AcyI GRCGYC 1 cut(s) 189
AfaI GTAC 1 cut(s) 1612
AloI GAACNNNNNNTCC 2 cut(s) 1432, 1464
AluBI AGCT 5 cut(s) 824, 990, 1174, 1436, 1559
AluI AGCT 5 cut(s) 824, 990, 1174, 1436, 1559
Alw26I GTCTC 1 cut(s) 1646
AlwI GGATC 1 cut(s) 1754
Aor13HI TCCGGA 1 cut(s) 760
AoxI GGCC 5 cut(s) 261, 1137, 1276, 1318, 1543
ApeKI GCWGC 5 cut(s) 36, 39, 42, 45, 506
ApoI RAATTY 1 cut(s) 513
Asp700I GAANNNNTTC 3 cut(s) 200, 213, 728
AspLEI GCGC 1 cut(s) 511
AspS9I GGNCC 1 cut(s) 262
AsuHPI GGTGA 4 cut(s) 442, 859, 868, 1145
AsuII TTCGAA 1 cut(s) 7
AxyI CCTNAGG 1 cut(s) 501
BaeI ACNNNNGTAYC 2 cut(s) 693, 726
BalI TGGCCA 1 cut(s) 1278
BanII GRGCYC 1 cut(s) 1070
BbsI GAAGAC 2 cut(s) 428, 1456
BbvI GCAGC 5 cut(s) 23, 51, 54, 57, 518
BccI CCATC 7 cut(s) 168, 305, 589, 628, 686, 910, 1205
BceAI ACGGC 2 cut(s) 363, 490
BciVI GTATCC 3 cut(s) 694, 1103, 1744
BcoDI GTCTC 1 cut(s) 1646
BfaI CTAG 2 cut(s) 1352, 1391
BfmI CTRYAG 3 cut(s) 37, 1455, 1665
BfuAI ACCTGC 1 cut(s) 527
BfuI GTATCC 3 cut(s) 694, 1103, 1744
BisI GCNGC 6 cut(s) 37, 40, 43, 46, 507, 612
BlsI GCNGC 6 cut(s) 38, 41, 44, 47, 508, 613
BmgT120I GGNCC 1 cut(s) 262
BmiI GGNNCC 1 cut(s) 1069
BmsI GCATC 5 cut(s) 706, 1254, 1495, 1699, 1721
BpiI GAAGAC 2 cut(s) 428, 1456
Bpu14I TTCGAA 1 cut(s) 7
BpuEI CTTGAG 2 cut(s) 118, 1709
BsaHI GRCGYC 1 cut(s) 189
BsaJI CCNNGG 2 cut(s) 1071, 1630
BsaWI WCCGGW 1 cut(s) 760
Bse1I ACTGG 2 cut(s) 811, 1168
Bse21I CCTNAGG 1 cut(s) 501
Bse3DI GCAATG 2 cut(s) 31, 726
BseAI TCCGGA 1 cut(s) 760
BseDI CCNNGG 2 cut(s) 1071, 1630
BseGI GGATG 4 cut(s) 297, 769, 921, 1714
BseMI GCAATG 2 cut(s) 31, 726
BseMII CTCAG 3 cut(s) 492, 747, 1251
BseNI ACTGG 2 cut(s) 811, 1168
BseRI GAGGAG 2 cut(s) 69, 1032
BseXI GCAGC 5 cut(s) 23, 51, 54, 57, 518
BseYI CCCAGC 1 cut(s) 1436
BsgI GTGCAG 1 cut(s) 276
Bsh1236I CGCG 2 cut(s) 223, 511
BshFI GGCC 5 cut(s) 263, 1139, 1278, 1320, 1545
BsiSI CCGG 2 cut(s) 656, 761
BsmAI GTCTC 1 cut(s) 1646
BsnI GGCC 5 cut(s) 263, 1139, 1278, 1320, 1545
Bsp119I TTCGAA 1 cut(s) 7
Bsp1286I GDGCHC 1 cut(s) 1070
Bsp13I TCCGGA 1 cut(s) 760
Bsp143I GATC 3 cut(s) 1048, 1128, 1759
BspACI CCGC 3 cut(s) 611, 1504, 1706
BspANI GGCC 5 cut(s) 263, 1139, 1278, 1320, 1545
BspCNI CTCAG 3 cut(s) 493, 746, 1252
BspEI TCCGGA 1 cut(s) 760
BspFNI CGCG 2 cut(s) 223, 511
BspLI GGNNCC 1 cut(s) 1069
BspMAI CTGCAG 1 cut(s) 41
BspMI ACCTGC 1 cut(s) 527
BspPI GGATC 1 cut(s) 1754
BspT104I TTCGAA 1 cut(s) 7
BsrDI GCAATG 2 cut(s) 31, 726
BsrI ACTGG 2 cut(s) 811, 1168
BssECI CCNNGG 2 cut(s) 1071, 1630
BssMI GATC 3 cut(s) 1048, 1128, 1759
BssNI GRCGYC 1 cut(s) 189
BssT1I CCWWGG 1 cut(s) 1071
Bst4CI ACNGT 6 cut(s) 448, 689, 1004, 1010, 1115, 1756
Bst6I CTCTTC 2 cut(s) 95, 734
BstACI GRCGYC 1 cut(s) 189
BstBI TTCGAA 1 cut(s) 7
BstC8I GCNNGC 1 cut(s) 653
BstDEI CTNAG 5 cut(s) 501, 626, 733, 1260, 1361
BstF5I GGATG 4 cut(s) 297, 769, 921, 1714
BstFNI CGCG 2 cut(s) 223, 511
BstHHI GCGC 1 cut(s) 511
BstKTI GATC 3 cut(s) 1051, 1131, 1762
BstMAI GTCTC 1 cut(s) 1646
BstMBI GATC 3 cut(s) 1048, 1128, 1759
BstMWI GCNNNNNNNGC 5 cut(s) 42, 45, 220, 229, 807
BstSFI CTRYAG 3 cut(s) 37, 1455, 1665
BstUI CGCG 2 cut(s) 223, 511
BstV1I GCAGC 5 cut(s) 23, 51, 54, 57, 518
BstV2I GAAGAC 2 cut(s) 428, 1456
BstX2I RGATCY 1 cut(s) 1759
BstXI CCANNNNNNTGG 1 cut(s) 937
BstYI RGATCY 1 cut(s) 1759
Bsu36I CCTNAGG 1 cut(s) 501
BsuI GTATCC 3 cut(s) 694, 1103, 1744
BsuRI GGCC 5 cut(s) 263, 1139, 1278, 1320, 1545
BtsCI GGATG 4 cut(s) 297, 769, 921, 1714
BtsI GCAGTG 1 cut(s) 606
BtsIMutI CAGTG 3 cut(s) 606, 818, 889
BveI ACCTGC 1 cut(s) 527
Cac8I GCNNGC 1 cut(s) 653
CfoI GCGC 1 cut(s) 511
Cfr13I GGNCC 1 cut(s) 262
CseI GACGC 2 cut(s) 197, 212
Csp6I GTAC 1 cut(s) 1611
CviAII CATG 3 cut(s) 592, 946, 1776
CviQI GTAC 1 cut(s) 1611
DdeI CTNAG 5 cut(s) 501, 626, 733, 1260, 1361
DpnI GATC 3 cut(s) 1050, 1130, 1761
DpnII GATC 3 cut(s) 1048, 1128, 1759
DraI TTTAAA 1 cut(s) 310
EaeI YGGCCR 1 cut(s) 1276
Eam1104I CTCTTC 2 cut(s) 95, 734
EarI CTCTTC 2 cut(s) 95, 734
Eco130I CCWWGG 1 cut(s) 1071
Eco147I AGGCCT 1 cut(s) 1545
Eco24I GRGCYC 1 cut(s) 1070
Eco57I CTGAAG 3 cut(s) 422, 865, 1329
Eco81I CCTNAGG 1 cut(s) 501
EcoT14I CCWWGG 1 cut(s) 1071
EcoT22I ATGCAT 1 cut(s) 1714
EcoT38I GRGCYC 1 cut(s) 1070
ErhI CCWWGG 1 cut(s) 1071
FaeI CATG 3 cut(s) 595, 949, 1779
FalI AAGNNNNNCTT 4 cut(s) 1055, 1087, 1671, 1703
FatI CATG 3 cut(s) 591, 945, 1775
Fnu4HI GCNGC 6 cut(s) 37, 40, 43, 46, 507, 612
FokI GGATG 4 cut(s) 284, 776, 928, 1721
FriOI GRGCYC 1 cut(s) 1070
Fsp4HI GCNGC 6 cut(s) 37, 40, 43, 46, 507, 612
FspBI CTAG 2 cut(s) 1352, 1391
GlaI GCGC 1 cut(s) 510
GluI GCNGC 6 cut(s) 37, 40, 43, 46, 507, 612
GsaI CCCAGC 1 cut(s) 1440
HaeIII GGCC 5 cut(s) 263, 1139, 1278, 1320, 1545
HapII CCGG 2 cut(s) 656, 761
HgaI GACGC 2 cut(s) 197, 212
HhaI GCGC 1 cut(s) 511
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 3 cut(s) 595, 949, 1779
Hin6I GCGC 1 cut(s) 509
HinP1I GCGC 1 cut(s) 509
HincII GTYRAC 2 cut(s) 100, 943
HindII GTYRAC 2 cut(s) 100, 943
HinfI GANTC 7 cut(s) 4, 76, 385, 787, 952, 1522, 1787
HpaII CCGG 2 cut(s) 656, 761
HphI GGTGA 4 cut(s) 442, 859, 868, 1145
Hpy166II GTNNAC 4 cut(s) 100, 943, 1405, 1572
Hpy188I TCNGA 5 cut(s) 167, 736, 1261, 1631, 1796
Hpy188III TCNNGA 6 cut(s) 761, 866, 1154, 1181, 1286, 1679
Hpy8I GTNNAC 4 cut(s) 100, 943, 1405, 1572
HpyAV CCTTC 8 cut(s) 190, 243, 466, 889, 905, 1367, 1415, 1576
HpyCH4III ACNGT 6 cut(s) 448, 689, 1004, 1010, 1115, 1756
HpyCH4IV ACGT 1 cut(s) 1508
HpyCH4V TGCA 9 cut(s) 39, 293, 591, 696, 719, 801, 1267, 1431, 1712
HpyF10VI GCNNNNNNNGC 5 cut(s) 42, 45, 220, 229, 807
HpyF3I CTNAG 5 cut(s) 501, 626, 733, 1260, 1361
HpySE526I ACGT 1 cut(s) 1508
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 3 cut(s) 595, 949, 1779
HspAI GCGC 1 cut(s) 509
Kpn2I TCCGGA 1 cut(s) 760
Kzo9I GATC 3 cut(s) 1048, 1128, 1759
LmnI GCTCC 3 cut(s) 763, 1073, 1171
Lsp1109I GCAGC 5 cut(s) 23, 51, 54, 57, 518
LweI GCATC 5 cut(s) 706, 1254, 1495, 1699, 1721
MaeI CTAG 2 cut(s) 1352, 1391
MaeII ACGT 1 cut(s) 1508
MaeIII GTNAC 8 cut(s) 448, 559, 664, 769, 874, 1004, 1091, 1325
MalI GATC 3 cut(s) 1050, 1130, 1761
MboI GATC 3 cut(s) 1048, 1128, 1759
MflI RGATCY 1 cut(s) 1759
MhlI GDGCHC 1 cut(s) 1070
MlsI TGGCCA 1 cut(s) 1278
MluCI AATT 9 cut(s) 275, 330, 418, 428, 513, 576, 1355, 1565, 1623
MluNI TGGCCA 1 cut(s) 1278
MlyI GAGTC 1 cut(s) 70
MmeI TCCRAC 1 cut(s) 1365
Mox20I TGGCCA 1 cut(s) 1278
Mph1103I ATGCAT 1 cut(s) 1714
MroI TCCGGA 1 cut(s) 760
MroXI GAANNNNTTC 3 cut(s) 200, 213, 728
MscI TGGCCA 1 cut(s) 1278
MseI TTAA 8 cut(s) 309, 354, 579, 672, 1077, 1314, 1550, 1782
Msp20I TGGCCA 1 cut(s) 1278
MspI CCGG 2 cut(s) 656, 761
MvnI CGCG 2 cut(s) 223, 511
MwoI GCNNNNNNNGC 5 cut(s) 42, 45, 220, 229, 807
NdeII GATC 3 cut(s) 1048, 1128, 1759
NlaIII CATG 3 cut(s) 595, 949, 1779
NlaIV GGNNCC 1 cut(s) 1069
NmuCI GTSAC 2 cut(s) 448, 874
NsiI ATGCAT 1 cut(s) 1714
NspV TTCGAA 1 cut(s) 7
PceI AGGCCT 1 cut(s) 1545
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PdmI GAANNNNTTC 3 cut(s) 200, 213, 728
PfeI GAWTC 6 cut(s) 4, 385, 787, 952, 1522, 1787
PkrI GCNGC 6 cut(s) 38, 41, 44, 47, 508, 613
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
PsiI TTATAA 2 cut(s) 1197, 1302
PspFI CCCAGC 1 cut(s) 1436
PspN4I GGNNCC 1 cut(s) 1069
PspPI GGNCC 1 cut(s) 262
PstI CTGCAG 1 cut(s) 41
PsuI RGATCY 1 cut(s) 1759
RsaI GTAC 1 cut(s) 1612
RsaNI GTAC 1 cut(s) 1611
SaqAI TTAA 8 cut(s) 309, 354, 579, 672, 1077, 1314, 1550, 1782
SatI GCNGC 6 cut(s) 37, 40, 43, 46, 507, 612
Sau3AI GATC 3 cut(s) 1048, 1128, 1759
Sau96I GGNCC 1 cut(s) 262
SchI GAGTC 1 cut(s) 70
SduI GDGCHC 1 cut(s) 1070
SfaNI GCATC 5 cut(s) 706, 1254, 1495, 1699, 1721
SfcI CTRYAG 3 cut(s) 37, 1455, 1665
SfuI TTCGAA 1 cut(s) 7
SmlI CTYRAG 2 cut(s) 133, 1688
SmoI CTYRAG 2 cut(s) 133, 1688
Sse9I AATT 9 cut(s) 275, 330, 418, 428, 513, 576, 1355, 1565, 1623
SseBI AGGCCT 1 cut(s) 1545
SsiI CCGC 3 cut(s) 611, 1504, 1706
SspI AATATT 1 cut(s) 1306
SspMI CTAG 2 cut(s) 1352, 1391
StuI AGGCCT 1 cut(s) 1545
StyI CCWWGG 1 cut(s) 1071
TaaI ACNGT 6 cut(s) 448, 689, 1004, 1010, 1115, 1756
TaiI ACGT 1 cut(s) 1511
TaqI TCGA 3 cut(s) 7, 204, 328
TasI AATT 9 cut(s) 275, 330, 418, 428, 513, 576, 1355, 1565, 1623
TauI GCSGC 1 cut(s) 614
TfiI GAWTC 6 cut(s) 4, 385, 787, 952, 1522, 1787
Tru1I TTAA 8 cut(s) 309, 354, 579, 672, 1077, 1314, 1550, 1782
Tru9I TTAA 8 cut(s) 309, 354, 579, 672, 1077, 1314, 1550, 1782
TscAI CASTG 3 cut(s) 613, 818, 889
TseFI GTSAC 2 cut(s) 448, 874
TseI GCWGC 5 cut(s) 36, 39, 42, 45, 506
Tsp45I GTSAC 2 cut(s) 448, 874
TspDTI ATGAA 7 cut(s) 110, 222, 737, 855, 1073, 1595, 1655
TspRI CASTG 3 cut(s) 613, 818, 889
XapI RAATTY 1 cut(s) 513
XmnI GAANNNNTTC 3 cut(s) 200, 213, 728
XspI CTAG 2 cut(s) 1352, 1391
Zsp2I ATGCAT 1 cut(s) 1714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.