RchiOBHm_Chr6g0256371

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000135
Physical Location & Seq
Reverse (-)
11569224 .. 11570289
1066 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22997

Sequence Viewer

Length: 987 bp
ATGAGTATGACGCTGTACCAACCTCACATGAAAGTTTCATCTGATTCAGAATCTTTTGTTATTCCTAATCTCCCGCATGAGATCAAGACGACAAGAAACGAACTACCAACTTTTCTTACTCCAAATGATGAGACAGGACTCAACAAGATGCTCGAAGTATGTAGAAAGGCTGAAGAAAGGAGCTTCGGGATTATTATTAATAGTTTCTATGAACTTGAACCAGATTATGCAGATCACTATAGAAAGGTATTTAGGAGGAAGTCATGGCATATCGGCCCGGTTTCTTTATGCAATAAGGCAGAAAAGGATATATCAGGAAGGGGAAGGGAAGGCTCGGTTGATGAAGTTCATGAGTGCTTGAACTGGCTTAATTCTAAGAAAGCGAATTCGGTTGTTTATATATGCTTTGGAAGCCAGGGCAGTTTCAGTGATGTTCAGCTCCTAGAAATTGCTATAGGTCTCGAGGCTTCTGGACAACAGTTCATTTGGGTTGTTAAGAAAGAAAAGAATGATGAAGAAGAGTGGTTGCCTGAAGGGTTTGAGCAGAGAATGGAGGGAAAGGGACTTATTATAAGAGGTTGGGCTCCCCAACTACTGATTCTTCAACATGAAGCAGTTGGGGCCTTTCTCACTCATTGTGGGTGGAACTCGATCCTTGAAGGAGTGTCAGCCGGGGTGCCAATGATCACCTGGCCGGTGTTCGCTGACCAGTTTAACAATGAGAAGTTGGTGACTCAGATACTTAGGATTGGAGTTGCTATTGGTGCTCAAAAGTCGGAGGATGGTAGTGTGAAGACCGAAGCCAGTGTGAAGAGTGAGGCTATTAAGAAGGCTGTAACTGAAATAATGGAAGGTGATGAAGCTGACGGCATGAGAAGCAAAGCTTTTGCTCTTGGAGAGACGGCAAAGAGGGCAGTTGAGGAAGGCGGTTCATCGTTTTCCGATTTAACTGCTCTAATTGAAGAGTTGAGGTCCCTTGGGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

328

Amino Acids

36.5

Weight (kDa)

5.15

Isoelectric Point (pI)

46.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 117 - 246 8.1e-23 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000135)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15480 AT2G15480 AT2G15490 AT2G15490 AT2G15490 AT4G34131 AT4G34135 AT4G34135 AT4G34138
fragaria_vesca FvH4_2g05600 FvH4_2g05601 FvH4_2g05602 FvH4_2g05603 FvH4_2g05604 FvH4_2g05630 FvH4_2g05660 FvH4_2g05662 FvH4_2g05663 FvH4_2g05671 FvH4_2g05680 FvH4_3g09760 FvH4_3g09780 FvH4_7g23180
malus_domestica MD00G1046200.v1.1 MD04G1214200.v1.1 MD05G1085700.v1.1 MD05G1085800.v1.1 MD05G1086200.v1.1 MD05G1086300.v1.1 MD05G1091500.v1.1 MD07G1007400.v1.1 MD07G1007500.v1.1 MD07G1007600.v1.1 MD17G1100000.v1.1 MD17G1100300.v1.1
prunus_persica Prupe.8G129800_v2.0.a1 Prupe.8G130100_v2.0.a1 Prupe.8G130200_v2.0.a1 Prupe.8G130300_v2.0.a1 Prupe.8G130400_v2.0.a1 Prupe.8G130500_v2.0.a1 Prupe.8G130600_v2.0.a1 Prupe.8G130700_v2.0.a1 Prupe.8G130800_v2.0.a1 Prupe.8G130900_v2.0.a1 Prupe.8G131000_v2.0.a1 Prupe.8G131000_v2.0.a1
pyrus_communis pycom05g08530 pycom05g08560 pycom07g00600 pycom07g00610 pycom07g00620 pycom17g09520 pycom2675g00060
rosa_chinensis RchiOBHm_Chr2g0111601 RchiOBHm_Chr2g0125751 RchiOBHm_Chr6g0248631 RchiOBHm_Chr6g0248721 RchiOBHm_Chr6g0255881 RchiOBHm_Chr6g0255911 RchiOBHm_Chr6g0255931 RchiOBHm_Chr6g0256041 RchiOBHm_Chr6g0256061 RchiOBHm_Chr6g0256081 RchiOBHm_Chr6g0256121 RchiOBHm_Chr6g0256131 RchiOBHm_Chr6g0256151 RchiOBHm_Chr6g0256161 RchiOBHm_Chr6g0256211 RchiOBHm_Chr6g0256221 RchiOBHm_Chr6g0256241 RchiOBHm_Chr6g0256251 RchiOBHm_Chr6g0256311 RchiOBHm_Chr6g0256331 RchiOBHm_Chr6g0256351 RchiOBHm_Chr6g0256361 RchiOBHm_Chr6g0256371 RchiOBHm_Chr6g0256411 RchiOBHm_Chr6g0256421 RchiOBHm_Chr6g0256431 RchiOBHm_Chr6g0256461 RchiOBHm_Chr6g0256471 RchiOBHm_Chr6g0256501 RchiOBHm_Chr6g0256511 RchiOBHm_Chr6g0256521 RchiOBHm_Chr6g0256531 RchiOBHm_Chr6g0256611 RchiOBHm_Chr6g0257761 RchiOBHm_Chr6g0276931
rosa_laevigata RLG00000014720 RLG00000014721 RLG00000014763 RLG00000014766 RLG00000014768 RLG00000014769 RLG00000014770 RLG00000014774 RLG00000014776 RLG00000014777 RLG00000014778 RLG00000014781 RLG00000014782 RLG00000014783 RLG00000014786 RLG00000014787 RLG00000014788 RLG00000014789 RLG00000014790 RLG00000014791 RLG00000014793 RLG00000014795 RLG00000014799 RLG00000014800 RLG00000014803 RLG00000014805 RLG00000015130 RLG00000015139
rosa_multiflora Rmu_co8160604.1_g000001 Rmu_sc0001598.1_g000016 Rmu_sc0001598.1_g000018 Rmu_sc0001598.1_g000024 Rmu_sc0001738.1_g000012 Rmu_sc0001738.1_g000013 Rmu_sc0001896.1_g000025 Rmu_sc0001896.1_g000029 Rmu_sc0001896.1_g000037 Rmu_sc0001896.1_g000039 Rmu_sc0002393.1_g000006 Rmu_sc0002553.1_g000039 Rmu_sc0004414.1_g000007 Rmu_sc0005080.1_g000001 Rmu_sc0005080.1_g000002 Rmu_sc0005080.1_g000003 Rmu_sc0005080.1_g000006 Rmu_sc0005080.1_g000007 Rmu_sc0005080.1_g000008 Rmu_sc0005080.1_g000010 Rmu_sc0005080.1_g000011 Rmu_sc0005080.1_g000012 Rmu_sc0008707.1_g000001 Rmu_sc0008707.1_g000003 Rmu_sc0008832.1_g000002 Rmu_sc0010826.1_g000012 Rmu_sc0011315.1_g000009 Rmu_sc0019708.1_g000001
rosa_roxburghii Rroxscaffold_2G00108580 Rroxscaffold_7G00208920 Rroxscaffold_7G00209240 Rroxscaffold_7G00209250 Rroxscaffold_7G00209260 Rroxscaffold_7G00209270 Rroxscaffold_7G00209360 Rroxscaffold_7G00209380 Rroxscaffold_7G00209390 Rroxscaffold_7G00209430 Rroxscaffold_7G00209440 Rroxscaffold_7G00209510 Rroxscaffold_7G00209540
rosa_rugosa Rorug05G0532600 Rorug05G0562400 Rorug05G0562500 Rorug05G0563000 Rorug05G0563100 Rorug05G0563300 Rorug05G0563300 Rorug05G0563600 Rorug05G0563700 Rorug05G0563800 Rorug05G0564000 Rorug05G0564100 Rorug05G0564200 Rorug05G0564300 Rorug05G0564400 Rorug05G0564500 Rorug05G0564600 Rorug05G0564600 Rorug05G0568600 Rorug05G0568700
rosa_wichuraiana Rw6G004280 Rw6G004380 Rw6G006940 Rw6G006950 Rw6G006960 Rw6G007000 Rw6G007090 Rw6G007100 Rw6G007110 Rw6G007150 Rw6G007160 Rw6G007170 Rw6G007200 Rw6G007210 Rw6G007240 Rw6G007250 Rw6G007280 Rw6G007290 Rw6G007300 Rw6G007310 Rw6G007320 Rw6G007340 Rw6G007350 Rw6G007360 Rw6G007380 Rw6G007660 Rw6G018660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 572
AccB1I GGYRCC 1 cut(s) 676
AciI CCGC 2 cut(s) 74, 927
AclWI GGATC 1 cut(s) 646
AcoI YGGCCR 1 cut(s) 692
AcsI RAATTY 1 cut(s) 385
AcuI CTGAAG 2 cut(s) 192, 552
AfaI GTAC 1 cut(s) 17
AgsI TTSAA 5 cut(s) 218, 361, 605, 659, 962
AjnI CCWGG 2 cut(s) 414, 689
AjuI GAANNNNNNNTTGG 2 cut(s) 582, 614
AluBI AGCT 4 cut(s) 183, 439, 863, 884
AluI AGCT 4 cut(s) 183, 439, 863, 884
Alw21I GWGCWC 1 cut(s) 769
Alw26I GTCTC 3 cut(s) 125, 464, 893
AlwI GGATC 1 cut(s) 646
Ama87I CYCGRG 1 cut(s) 461
AoxI GGCC 3 cut(s) 274, 621, 692
ApoI RAATTY 1 cut(s) 385
AseI ATTAAT 1 cut(s) 198
AspS9I GGNCC 3 cut(s) 275, 621, 972
AsuC2I CCSGG 2 cut(s) 278, 673
AsuHPI GGTGA 3 cut(s) 679, 742, 866
AvaI CYCGRG 1 cut(s) 461
AvaII GGWCC 1 cut(s) 972
BanI GGYRCC 1 cut(s) 676
BanII GRGCYC 1 cut(s) 586
BbsI GAAGAC 1 cut(s) 800
Bbv12I GWGCWC 1 cut(s) 769
BccI CCATC 1 cut(s) 776
BceAI ACGGC 2 cut(s) 883, 918
BcgI CGANNNNNNTGC 2 cut(s) 932, 966
BciT130I CCWGG 2 cut(s) 416, 691
BclI TGATCA 1 cut(s) 684
BcnI CCSGG 2 cut(s) 278, 673
BcoDI GTCTC 3 cut(s) 125, 464, 893
BfaI CTAG 1 cut(s) 443
BfmI CTRYAG 2 cut(s) 238, 453
Bme1390I CCNGG 4 cut(s) 278, 416, 673, 691
Bme18I GGWCC 1 cut(s) 972
BmeT110I CYCGRG 1 cut(s) 461
BmgT120I GGNCC 3 cut(s) 275, 621, 972
BmiI GGNNCC 4 cut(s) 585, 622, 678, 974
BmrFI CCNGG 4 cut(s) 278, 416, 673, 691
BmsI GCATC 1 cut(s) 138
BpiI GAAGAC 1 cut(s) 800
BpuMI CCSGG 2 cut(s) 278, 673
BsaI GGTCTC 1 cut(s) 464
BsaJI CCNNGG 3 cut(s) 415, 672, 976
Bse118I RCCGGY 1 cut(s) 694
Bse1I ACTGG 3 cut(s) 368, 709, 804
BseBI CCWGG 2 cut(s) 416, 691
BseDI CCNNGG 3 cut(s) 415, 672, 976
BseGI GGATG 1 cut(s) 787
BseMII CTCAG 1 cut(s) 749
BseNI ACTGG 3 cut(s) 368, 709, 804
BshFI GGCC 3 cut(s) 276, 623, 694
BshNI GGYRCC 1 cut(s) 676
BsiHKAI GWGCWC 1 cut(s) 769
BsiHKCI CYCGRG 1 cut(s) 461
BsiSI CCGG 3 cut(s) 278, 672, 695
BslFI GGGAC 2 cut(s) 576, 958
BsmAI GTCTC 3 cut(s) 125, 464, 893
BsmBI CGTCTC 1 cut(s) 893
BsmFI GGGAC 2 cut(s) 576, 958
BsnI GGCC 3 cut(s) 276, 623, 694
Bso31I GGTCTC 1 cut(s) 464
BsoBI CYCGRG 1 cut(s) 461
Bsp1286I GDGCHC 2 cut(s) 586, 769
Bsp143I GATC 4 cut(s) 81, 232, 651, 684
BspACI CCGC 2 cut(s) 74, 927
BspANI GGCC 3 cut(s) 276, 623, 694
BspCNI CTCAG 1 cut(s) 748
BspHI TCATGA 1 cut(s) 349
BspLI GGNNCC 4 cut(s) 585, 622, 678, 974
BspPI GGATC 1 cut(s) 646
BspT107I GGYRCC 1 cut(s) 676
BspTNI GGTCTC 1 cut(s) 464
BsrFI RCCGGY 1 cut(s) 694
BsrI ACTGG 3 cut(s) 368, 709, 804
BssAI RCCGGY 1 cut(s) 694
BssECI CCNNGG 3 cut(s) 415, 672, 976
BssMI GATC 4 cut(s) 81, 232, 651, 684
BssT1I CCWWGG 1 cut(s) 976
Bst2UI CCWGG 2 cut(s) 416, 691
Bst4CI ACNGT 1 cut(s) 480
Bst6I CTCTTC 3 cut(s) 513, 806, 957
BstDEI CTNAG 3 cut(s) 375, 735, 743
BstF5I GGATG 1 cut(s) 787
BstKTI GATC 4 cut(s) 84, 235, 654, 687
BstMAI GTCTC 3 cut(s) 125, 464, 893
BstMBI GATC 4 cut(s) 81, 232, 651, 684
BstMWI GCNNNNNNNGC 5 cut(s) 411, 620, 764, 876, 911
BstNI CCWGG 2 cut(s) 416, 691
BstSCI CCNGG 4 cut(s) 276, 414, 671, 689
BstSFI CTRYAG 2 cut(s) 238, 453
BstV2I GAAGAC 1 cut(s) 800
BsuRI GGCC 3 cut(s) 276, 623, 694
BtsCI GGATG 1 cut(s) 787
BtsIMutI CAGTG 2 cut(s) 433, 811
CciI TCATGA 1 cut(s) 349
Cfr10I RCCGGY 1 cut(s) 694
Cfr13I GGNCC 3 cut(s) 275, 621, 972
CseI GACGC 1 cut(s) 19
Csp6I GTAC 1 cut(s) 16
CviAII CATG 6 cut(s) 28, 77, 264, 350, 608, 871
CviQI GTAC 1 cut(s) 16
DdeI CTNAG 3 cut(s) 375, 735, 743
DpnI GATC 4 cut(s) 83, 234, 653, 686
DpnII GATC 4 cut(s) 81, 232, 651, 684
EaeI YGGCCR 1 cut(s) 692
Eam1104I CTCTTC 3 cut(s) 513, 806, 957
EarI CTCTTC 3 cut(s) 513, 806, 957
Eco130I CCWWGG 1 cut(s) 976
Eco24I GRGCYC 1 cut(s) 586
Eco31I GGTCTC 1 cut(s) 464
Eco47I GGWCC 1 cut(s) 972
Eco57I CTGAAG 2 cut(s) 192, 552
Eco88I CYCGRG 1 cut(s) 461
EcoO109I RGGNCCY 2 cut(s) 621, 972
EcoRI GAATTC 1 cut(s) 385
EcoRII CCWGG 2 cut(s) 414, 689
EcoT14I CCWWGG 1 cut(s) 976
EcoT38I GRGCYC 1 cut(s) 586
ErhI CCWWGG 1 cut(s) 976
Esp3I CGTCTC 1 cut(s) 893
FaeI CATG 6 cut(s) 31, 80, 267, 353, 611, 874
FalI AAGNNNNNCTT 2 cut(s) 868, 900
FaqI GGGAC 2 cut(s) 576, 958
FatI CATG 6 cut(s) 27, 76, 263, 349, 607, 870
FauI CCCGC 1 cut(s) 81
FbaI TGATCA 1 cut(s) 684
FokI GGATG 1 cut(s) 794
FriOI GRGCYC 1 cut(s) 586
FspBI CTAG 1 cut(s) 443
HaeIII GGCC 3 cut(s) 276, 623, 694
HapII CCGG 3 cut(s) 278, 672, 695
HgaI GACGC 1 cut(s) 19
Hin1II CATG 6 cut(s) 31, 80, 267, 353, 611, 874
HindIII AAGCTT 1 cut(s) 882
HinfI GANTC 5 cut(s) 44, 50, 138, 598, 733
HpaII CCGG 3 cut(s) 278, 672, 695
HphI GGTGA 3 cut(s) 679, 742, 866
Hpy188I TCNGA 5 cut(s) 43, 49, 738, 778, 943
Hpy188III TCNNGA 7 cut(s) 85, 187, 315, 350, 461, 471, 984
HpyAV CCTTC 8 cut(s) 312, 318, 323, 527, 653, 823, 845, 917
HpyCH4III ACNGT 1 cut(s) 480
HpyCH4V TGCA 2 cut(s) 230, 291
HpyF10VI GCNNNNNNNGC 5 cut(s) 411, 620, 764, 876, 911
HpyF3I CTNAG 3 cut(s) 375, 735, 743
Hsp92II CATG 6 cut(s) 31, 80, 267, 353, 611, 874
Ksp22I TGATCA 1 cut(s) 684
Kzo9I GATC 4 cut(s) 81, 232, 651, 684
LmnI GCTCC 3 cut(s) 180, 444, 589
LweI GCATC 1 cut(s) 138
MaeI CTAG 1 cut(s) 443
MaeIII GTNAC 2 cut(s) 730, 835
MalI GATC 4 cut(s) 83, 234, 653, 686
MboI GATC 4 cut(s) 81, 232, 651, 684
MboII GAAGA 7 cut(s) 185, 527, 530, 593, 805, 823, 974
MhlI GDGCHC 2 cut(s) 586, 769
MluCI AATT 4 cut(s) 370, 385, 447, 957
MlyI GAGTC 2 cut(s) 132, 727
MmeI TCCRAC 1 cut(s) 756
MseI TTAA 6 cut(s) 198, 369, 495, 714, 825, 947
MspI CCGG 3 cut(s) 278, 672, 695
MspR9I CCNGG 4 cut(s) 278, 416, 673, 691
MvaI CCWGG 2 cut(s) 416, 691
MwoI GCNNNNNNNGC 5 cut(s) 411, 620, 764, 876, 911
NciI CCSGG 2 cut(s) 278, 673
NdeII GATC 4 cut(s) 81, 232, 651, 684
NlaIII CATG 6 cut(s) 31, 80, 267, 353, 611, 874
NlaIV GGNNCC 4 cut(s) 585, 622, 678, 974
NmuCI GTSAC 1 cut(s) 730
PaeR7I CTCGAG 1 cut(s) 461
PagI TCATGA 1 cut(s) 349
PfeI GAWTC 3 cut(s) 44, 50, 598
PleI GAGTC 2 cut(s) 132, 727
PpsI GAGTC 2 cut(s) 132, 727
PpuMI RGGWCCY 1 cut(s) 972
PshBI ATTAAT 1 cut(s) 198
PsiI TTATAA 1 cut(s) 572
Psp5II RGGWCCY 1 cut(s) 972
Psp6I CCWGG 2 cut(s) 414, 689
PspGI CCWGG 2 cut(s) 414, 689
PspN4I GGNNCC 4 cut(s) 585, 622, 678, 974
PspPI GGNCC 3 cut(s) 275, 621, 972
PspPPI RGGWCCY 1 cut(s) 972
RsaI GTAC 1 cut(s) 17
RsaNI GTAC 1 cut(s) 16
SaqAI TTAA 6 cut(s) 198, 369, 495, 714, 825, 947
Sau3AI GATC 4 cut(s) 81, 232, 651, 684
Sau96I GGNCC 3 cut(s) 275, 621, 972
SchI GAGTC 2 cut(s) 132, 727
ScrFI CCNGG 4 cut(s) 278, 416, 673, 691
SduI GDGCHC 2 cut(s) 586, 769
SfaNI GCATC 1 cut(s) 138
SfcI CTRYAG 2 cut(s) 238, 453
Sfr274I CTCGAG 1 cut(s) 461
SinI GGWCC 1 cut(s) 972
SlaI CTCGAG 1 cut(s) 461
SmlI CTYRAG 1 cut(s) 461
SmoI CTYRAG 1 cut(s) 461
Sse9I AATT 4 cut(s) 370, 385, 447, 957
SsiI CCGC 2 cut(s) 74, 927
SspMI CTAG 1 cut(s) 443
StyD4I CCNGG 4 cut(s) 276, 414, 671, 689
StyI CCWWGG 1 cut(s) 976
TaaI ACNGT 1 cut(s) 480
TaqI TCGA 3 cut(s) 153, 462, 650
TaqII GACCGA 1 cut(s) 812
TasI AATT 4 cut(s) 370, 385, 447, 957
TfiI GAWTC 3 cut(s) 44, 50, 598
Tru1I TTAA 6 cut(s) 198, 369, 495, 714, 825, 947
Tru9I TTAA 6 cut(s) 198, 369, 495, 714, 825, 947
TscAI CASTG 2 cut(s) 433, 811
TseFI GTSAC 1 cut(s) 730
Tsp45I GTSAC 1 cut(s) 730
TspRI CASTG 2 cut(s) 433, 811
VpaK11BI GGWCC 1 cut(s) 972
VspI ATTAAT 1 cut(s) 198
XapI RAATTY 1 cut(s) 385
XcmI CCANNNNNNNNNTGG 1 cut(s) 687
XhoI CTCGAG 1 cut(s) 461
XspI CTAG 1 cut(s) 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.