RchiOBHm_Chr6g0248631

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000135
Physical Location & Seq
Reverse (-)
4574453 .. 4575776
1324 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22285

Sequence Viewer

Length: 1215 bp
ATGGAAACTAAATCTGGTGAGCAGCTTAATATCTTGTTCTTTCCATACATGGTTCAAGGCCACATTATACCCCTCACACATATAGCCAAATTATTTTCTTCTCGTGGTGTGAAATCGACCATAATAACCACTCCGGTCAATGCACCATTCATTACCAAAGCAACCCAAAGAAGCAAAAGTACTCTGGCATTTGATCAGAAAATTGAACTTGTTCTCATCAAGTTCCCATCTGCTGAAGTTGGATTGCCTGAGGAATGCGAGAGGGCTGATTTGATCACAACACCAGAGATGGAAGGAAAATTCTTCACAGCCACCCGTTTGCTTGAACCACAGCTCGAACAAATTTTGGACCAACATCGACCTCATTGCCTTGTTGCTGATTTTTTCTTTCCTTGGGCTACAGATGTTGCTGCCAAGTTTGGAATTCCAAGGCTATATTTTCATGCAACCGGATTGTTCCCTTTGTGTGCTACATTGAGTGTGATGATACATCAACCTCACAAGAATTTGTTATCTGAAACAGAATCTATTCTAGATGATGAAGCAGAATTTAGCAAGTTCTGGAAAGCGGCCTTAGAGTGTGAGAAAAGAAGCTACGGGGTCATTATTAACAGCTTCTACGAACTTGAACCAGATTATGCTGATCACTACAGGAAGGTGTATGGGAGGAAGACATGGCATATTGGCCCGGTTTCCCTATTCGACAAGGCAGCAGAAAATATGGCCGCTGCAGAGCAACACCAGTGCTTTAAATGGCTTGATTCTAAGAAACCCAATTCGGTTGTATATGTATGTTTCGGAAGCATGATCAACTTTGCTGATTGTCAGCTCCTAGAAATTGCAGCAGGCCTTGAGGCTTCTGGACAGGACTTCATTTGGGTTGTGAAGAAACAAAAGAAAGAGATAGAAGAGTGGTTGCCTGAGGGATTTGAGAAGAGAATGCAAGTTGGAGCTTTTCTCTCTCATTGTGGGTGGAACTCAGTCCTTGAAGGAGTCTCTGCTGGGATACCGATGATGACCTGGCCGGTGTTTGCTGATCACTTTTACACTGAGAAGTTGGTGACGCAGATACTTCGTGTTGGGGTTGGTGTTGGTGCTGAAAAATGGGTTTCATTTGTGGATGAAAGTTTGAAGAGTGAGGCCAGTGTGAAGAGGCAGGCCATAGAGAAGGCTGTGACAATAGAATCATGGAGGGTGATGAAGCAGAGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

404

Amino Acids

45.93

Weight (kDa)

6.21

Isoelectric Point (pI)

43.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 251 - 348 5.5e-15 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000135)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15480 AT2G15480 AT2G15490 AT2G15490 AT2G15490 AT4G34131 AT4G34135 AT4G34135 AT4G34138
fragaria_vesca FvH4_2g05600 FvH4_2g05601 FvH4_2g05602 FvH4_2g05603 FvH4_2g05604 FvH4_2g05630 FvH4_2g05660 FvH4_2g05662 FvH4_2g05663 FvH4_2g05671 FvH4_2g05680 FvH4_3g09760 FvH4_3g09780 FvH4_7g23180
malus_domestica MD00G1046200.v1.1 MD04G1214200.v1.1 MD05G1085700.v1.1 MD05G1085800.v1.1 MD05G1086200.v1.1 MD05G1086300.v1.1 MD05G1091500.v1.1 MD07G1007400.v1.1 MD07G1007500.v1.1 MD07G1007600.v1.1 MD17G1100000.v1.1 MD17G1100300.v1.1
prunus_persica Prupe.8G129800_v2.0.a1 Prupe.8G130100_v2.0.a1 Prupe.8G130200_v2.0.a1 Prupe.8G130300_v2.0.a1 Prupe.8G130400_v2.0.a1 Prupe.8G130500_v2.0.a1 Prupe.8G130600_v2.0.a1 Prupe.8G130700_v2.0.a1 Prupe.8G130800_v2.0.a1 Prupe.8G130900_v2.0.a1 Prupe.8G131000_v2.0.a1 Prupe.8G131000_v2.0.a1
pyrus_communis pycom05g08530 pycom05g08560 pycom07g00600 pycom07g00610 pycom07g00620 pycom17g09520 pycom2675g00060
rosa_chinensis RchiOBHm_Chr2g0111601 RchiOBHm_Chr2g0125751 RchiOBHm_Chr6g0248631 RchiOBHm_Chr6g0248721 RchiOBHm_Chr6g0255881 RchiOBHm_Chr6g0255911 RchiOBHm_Chr6g0255931 RchiOBHm_Chr6g0256041 RchiOBHm_Chr6g0256061 RchiOBHm_Chr6g0256081 RchiOBHm_Chr6g0256121 RchiOBHm_Chr6g0256131 RchiOBHm_Chr6g0256151 RchiOBHm_Chr6g0256161 RchiOBHm_Chr6g0256211 RchiOBHm_Chr6g0256221 RchiOBHm_Chr6g0256241 RchiOBHm_Chr6g0256251 RchiOBHm_Chr6g0256311 RchiOBHm_Chr6g0256331 RchiOBHm_Chr6g0256351 RchiOBHm_Chr6g0256361 RchiOBHm_Chr6g0256371 RchiOBHm_Chr6g0256411 RchiOBHm_Chr6g0256421 RchiOBHm_Chr6g0256431 RchiOBHm_Chr6g0256461 RchiOBHm_Chr6g0256471 RchiOBHm_Chr6g0256501 RchiOBHm_Chr6g0256511 RchiOBHm_Chr6g0256521 RchiOBHm_Chr6g0256531 RchiOBHm_Chr6g0256611 RchiOBHm_Chr6g0257761 RchiOBHm_Chr6g0276931
rosa_laevigata RLG00000014720 RLG00000014721 RLG00000014763 RLG00000014766 RLG00000014768 RLG00000014769 RLG00000014770 RLG00000014774 RLG00000014776 RLG00000014777 RLG00000014778 RLG00000014781 RLG00000014782 RLG00000014783 RLG00000014786 RLG00000014787 RLG00000014788 RLG00000014789 RLG00000014790 RLG00000014791 RLG00000014793 RLG00000014795 RLG00000014799 RLG00000014800 RLG00000014803 RLG00000014805 RLG00000015130 RLG00000015139
rosa_multiflora Rmu_co8160604.1_g000001 Rmu_sc0001598.1_g000016 Rmu_sc0001598.1_g000018 Rmu_sc0001598.1_g000024 Rmu_sc0001738.1_g000012 Rmu_sc0001738.1_g000013 Rmu_sc0001896.1_g000025 Rmu_sc0001896.1_g000029 Rmu_sc0001896.1_g000037 Rmu_sc0001896.1_g000039 Rmu_sc0002393.1_g000006 Rmu_sc0002553.1_g000039 Rmu_sc0004414.1_g000007 Rmu_sc0005080.1_g000001 Rmu_sc0005080.1_g000002 Rmu_sc0005080.1_g000003 Rmu_sc0005080.1_g000006 Rmu_sc0005080.1_g000007 Rmu_sc0005080.1_g000008 Rmu_sc0005080.1_g000010 Rmu_sc0005080.1_g000011 Rmu_sc0005080.1_g000012 Rmu_sc0008707.1_g000001 Rmu_sc0008707.1_g000003 Rmu_sc0008832.1_g000002 Rmu_sc0010826.1_g000012 Rmu_sc0011315.1_g000009 Rmu_sc0019708.1_g000001
rosa_roxburghii Rroxscaffold_2G00108580 Rroxscaffold_7G00208920 Rroxscaffold_7G00209240 Rroxscaffold_7G00209250 Rroxscaffold_7G00209260 Rroxscaffold_7G00209270 Rroxscaffold_7G00209360 Rroxscaffold_7G00209380 Rroxscaffold_7G00209390 Rroxscaffold_7G00209430 Rroxscaffold_7G00209440 Rroxscaffold_7G00209510 Rroxscaffold_7G00209540
rosa_rugosa Rorug05G0532600 Rorug05G0562400 Rorug05G0562500 Rorug05G0563000 Rorug05G0563100 Rorug05G0563300 Rorug05G0563300 Rorug05G0563600 Rorug05G0563700 Rorug05G0563800 Rorug05G0564000 Rorug05G0564100 Rorug05G0564200 Rorug05G0564300 Rorug05G0564400 Rorug05G0564500 Rorug05G0564600 Rorug05G0564600 Rorug05G0568600 Rorug05G0568700
rosa_wichuraiana Rw6G004280 Rw6G004380 Rw6G006940 Rw6G006950 Rw6G006960 Rw6G007000 Rw6G007090 Rw6G007100 Rw6G007110 Rw6G007150 Rw6G007160 Rw6G007170 Rw6G007200 Rw6G007210 Rw6G007240 Rw6G007250 Rw6G007280 Rw6G007290 Rw6G007300 Rw6G007310 Rw6G007320 Rw6G007340 Rw6G007350 Rw6G007360 Rw6G007380 Rw6G007660 Rw6G018660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 569, 726
AcoI YGGCCR 2 cut(s) 723, 1022
AcsI RAATTY 5 cut(s) 299, 342, 423, 505, 548
AcuI CTGAAG 1 cut(s) 255
AfaI GTAC 1 cut(s) 181
AgsI TTSAA 6 cut(s) 56, 206, 326, 629, 989, 1132
AjnI CCWGG 1 cut(s) 1019
AluBI AGCT 6 cut(s) 25, 334, 594, 615, 829, 953
AluI AGCT 6 cut(s) 25, 334, 594, 615, 829, 953
Alw26I GTCTC 1 cut(s) 1000
AoxI GGCC 8 cut(s) 58, 570, 685, 723, 847, 1022, 1140, 1158
ApeKI GCWGC 5 cut(s) 22, 410, 710, 728, 842
ApoI RAATTY 5 cut(s) 299, 342, 423, 505, 548
Asp700I GAANNNNTTC 2 cut(s) 210, 528
AspS9I GGNCC 2 cut(s) 349, 686
AsuC2I CCSGG 1 cut(s) 689
AsuHPI GGTGA 3 cut(s) 29, 1072, 1207
AvaII GGWCC 1 cut(s) 349
AxyI CCTNAGG 2 cut(s) 249, 921
BarI GAAGNNNNNNTAC 2 cut(s) 163, 195
BauI CACGAG 1 cut(s) 102
BbsI GAAGAC 1 cut(s) 677
BbvI GCAGC 5 cut(s) 34, 397, 715, 722, 854
BccI CCATC 2 cut(s) 235, 283
BcgI CGANNNNNNTGC 4 cut(s) 348, 382, 1055, 1089
BciT130I CCWGG 1 cut(s) 1021
BciVI GTATCC 1 cut(s) 999
BclI TGATCA 5 cut(s) 193, 273, 643, 807, 1036
BcnI CCSGG 1 cut(s) 689
BcoDI GTCTC 1 cut(s) 1000
BfaI CTAG 2 cut(s) 533, 833
BfmI CTRYAG 3 cut(s) 399, 649, 729
BfuI GTATCC 1 cut(s) 999
BisI GCNGC 7 cut(s) 23, 411, 570, 711, 726, 729, 843
BlsI GCNGC 7 cut(s) 24, 412, 571, 712, 727, 730, 844
BmcAI AGTACT 1 cut(s) 181
Bme1390I CCNGG 2 cut(s) 689, 1021
Bme18I GGWCC 1 cut(s) 349
BmgT120I GGNCC 2 cut(s) 349, 686
BmrFI CCNGG 2 cut(s) 689, 1021
BpiI GAAGAC 1 cut(s) 677
BplI GAGNNNNNCTC 2 cut(s) 942, 974
BpuEI CTTGAG 1 cut(s) 872
BpuMI CCSGG 1 cut(s) 689
BsaJI CCNNGG 2 cut(s) 392, 428
BsaWI WCCGGW 2 cut(s) 133, 449
Bse118I RCCGGY 1 cut(s) 1024
Bse1I ACTGG 2 cut(s) 742, 1143
Bse21I CCTNAGG 2 cut(s) 249, 921
Bse3DI GCAATG 1 cut(s) 364
BseBI CCWGG 1 cut(s) 1021
BseDI CCNNGG 2 cut(s) 392, 428
BseGI GGATG 1 cut(s) 1126
BseMI GCAATG 1 cut(s) 364
BseMII CTCAG 4 cut(s) 240, 912, 993, 1041
BseNI ACTGG 2 cut(s) 742, 1143
BseXI GCAGC 5 cut(s) 34, 397, 715, 722, 854
BseYI CCCAGC 1 cut(s) 1001
BshFI GGCC 8 cut(s) 60, 572, 687, 725, 849, 1024, 1142, 1160
BsiSI CCGG 4 cut(s) 134, 450, 689, 1025
BsmAI GTCTC 1 cut(s) 1000
BsmI GAATGC 2 cut(s) 260, 945
BsnI GGCC 8 cut(s) 60, 572, 687, 725, 849, 1024, 1142, 1160
Bsp143I GATC 5 cut(s) 193, 273, 643, 807, 1036
BspACI CCGC 2 cut(s) 569, 726
BspANI GGCC 8 cut(s) 60, 572, 687, 725, 849, 1024, 1142, 1160
BspCNI CTCAG 4 cut(s) 241, 913, 992, 1042
BspMAI CTGCAG 1 cut(s) 733
BsrDI GCAATG 1 cut(s) 364
BsrFI RCCGGY 1 cut(s) 1024
BsrI ACTGG 2 cut(s) 742, 1143
BssAI RCCGGY 1 cut(s) 1024
BssECI CCNNGG 2 cut(s) 392, 428
BssMI GATC 5 cut(s) 193, 273, 643, 807, 1036
BssSI CACGAG 1 cut(s) 102
BssT1I CCWWGG 2 cut(s) 392, 428
Bst2BI CACGAG 1 cut(s) 102
Bst2UI CCWGG 1 cut(s) 1021
Bst6I CTCTTC 4 cut(s) 903, 929, 1127, 1145
BstC8I GCNNGC 2 cut(s) 847, 1158
BstDEI CTNAG 6 cut(s) 249, 574, 765, 921, 979, 1050
BstF5I GGATG 1 cut(s) 1126
BstKTI GATC 5 cut(s) 196, 276, 646, 810, 1039
BstMAI GTCTC 1 cut(s) 1000
BstMBI GATC 5 cut(s) 193, 273, 643, 807, 1036
BstNI CCWGG 1 cut(s) 1021
BstSCI CCNGG 2 cut(s) 687, 1019
BstSFI CTRYAG 3 cut(s) 399, 649, 729
BstV1I GCAGC 5 cut(s) 34, 397, 715, 722, 854
BstV2I GAAGAC 1 cut(s) 677
Bsu36I CCTNAGG 2 cut(s) 249, 921
BsuI GTATCC 1 cut(s) 999
BsuRI GGCC 8 cut(s) 60, 572, 687, 725, 849, 1024, 1142, 1160
BtsCI GGATG 1 cut(s) 1126
BtsIMutI CAGTG 3 cut(s) 749, 1047, 1150
Cac8I GCNNGC 2 cut(s) 847, 1158
Cfr10I RCCGGY 1 cut(s) 1024
Cfr13I GGNCC 2 cut(s) 349, 686
CseI GACGC 1 cut(s) 1072
Csp6I GTAC 1 cut(s) 180
CviAII CATG 5 cut(s) 49, 443, 675, 805, 1188
CviQI GTAC 1 cut(s) 180
DdeI CTNAG 6 cut(s) 249, 574, 765, 921, 979, 1050
DpnI GATC 5 cut(s) 195, 275, 645, 809, 1038
DpnII GATC 5 cut(s) 193, 273, 643, 807, 1036
DraI TTTAAA 1 cut(s) 751
EaeI YGGCCR 2 cut(s) 723, 1022
Eam1104I CTCTTC 4 cut(s) 903, 929, 1127, 1145
EarI CTCTTC 4 cut(s) 903, 929, 1127, 1145
Eco130I CCWWGG 2 cut(s) 392, 428
Eco147I AGGCCT 1 cut(s) 849
Eco47I GGWCC 1 cut(s) 349
Eco57I CTGAAG 1 cut(s) 255
Eco81I CCTNAGG 2 cut(s) 249, 921
EcoRI GAATTC 1 cut(s) 423
EcoRII CCWGG 1 cut(s) 1019
EcoT14I CCWWGG 2 cut(s) 392, 428
ErhI CCWWGG 2 cut(s) 392, 428
FaeI CATG 5 cut(s) 52, 446, 678, 808, 1191
FatI CATG 5 cut(s) 48, 442, 674, 804, 1187
FbaI TGATCA 5 cut(s) 193, 273, 643, 807, 1036
Fnu4HI GCNGC 7 cut(s) 23, 411, 570, 711, 726, 729, 843
FokI GGATG 1 cut(s) 1133
Fsp4HI GCNGC 7 cut(s) 23, 411, 570, 711, 726, 729, 843
FspBI CTAG 2 cut(s) 533, 833
GluI GCNGC 7 cut(s) 23, 411, 570, 711, 726, 729, 843
GsaI CCCAGC 1 cut(s) 1005
HaeIII GGCC 8 cut(s) 60, 572, 687, 725, 849, 1024, 1142, 1160
HapII CCGG 4 cut(s) 134, 450, 689, 1025
HgaI GACGC 1 cut(s) 1072
Hin1II CATG 5 cut(s) 52, 446, 678, 808, 1191
HinfI GANTC 4 cut(s) 524, 761, 993, 1184
HpaII CCGG 4 cut(s) 134, 450, 689, 1025
HphI GGTGA 3 cut(s) 29, 1072, 1207
Hpy188I TCNGA 3 cut(s) 198, 517, 800
Hpy188III TCNNGA 3 cut(s) 533, 562, 861
HpyAV CCTTC 4 cut(s) 287, 649, 983, 1162
HpyCH4V TGCA 5 cut(s) 143, 446, 731, 842, 943
HpyF3I CTNAG 6 cut(s) 249, 574, 765, 921, 979, 1050
Hsp92II CATG 5 cut(s) 52, 446, 678, 808, 1191
Ksp22I TGATCA 5 cut(s) 193, 273, 643, 807, 1036
Kzo9I GATC 5 cut(s) 193, 273, 643, 807, 1036
LmnI GCTCC 2 cut(s) 834, 950
Lsp1109I GCAGC 5 cut(s) 34, 397, 715, 722, 854
MaeI CTAG 2 cut(s) 533, 833
MaeIII GTNAC 2 cut(s) 1060, 1174
MalI GATC 5 cut(s) 195, 275, 645, 809, 1038
MboI GATC 5 cut(s) 193, 273, 643, 807, 1036
MboII GAAGA 8 cut(s) 90, 295, 682, 898, 920, 946, 1144, 1162
MluCI AATT 9 cut(s) 89, 201, 299, 342, 423, 505, 548, 775, 837
MlyI GAGTC 1 cut(s) 1002
MmeI TCCRAC 2 cut(s) 220, 928
MroXI GAANNNNTTC 2 cut(s) 210, 528
MseI TTAA 3 cut(s) 27, 609, 750
MspA1I CMGCKG 1 cut(s) 728
MspI CCGG 4 cut(s) 134, 450, 689, 1025
MspR9I CCNGG 2 cut(s) 689, 1021
Mva1269I GAATGC 2 cut(s) 260, 945
MvaI CCWGG 1 cut(s) 1021
NciI CCSGG 1 cut(s) 689
NdeII GATC 5 cut(s) 193, 273, 643, 807, 1036
NlaIII CATG 5 cut(s) 52, 446, 678, 808, 1191
NmuCI GTSAC 2 cut(s) 1060, 1174
PceI AGGCCT 1 cut(s) 849
PctI GAATGC 2 cut(s) 260, 945
PdmI GAANNNNTTC 2 cut(s) 210, 528
PfeI GAWTC 3 cut(s) 524, 761, 1184
PkrI GCNGC 7 cut(s) 24, 412, 571, 712, 727, 730, 844
PleI GAGTC 1 cut(s) 1001
PpsI GAGTC 1 cut(s) 1001
Psp6I CCWGG 1 cut(s) 1019
PspFI CCCAGC 1 cut(s) 1001
PspGI CCWGG 1 cut(s) 1019
PspPI GGNCC 2 cut(s) 349, 686
PstI CTGCAG 1 cut(s) 733
RsaI GTAC 1 cut(s) 181
RsaNI GTAC 1 cut(s) 180
SaqAI TTAA 3 cut(s) 27, 609, 750
SatI GCNGC 7 cut(s) 23, 411, 570, 711, 726, 729, 843
Sau3AI GATC 5 cut(s) 193, 273, 643, 807, 1036
Sau96I GGNCC 2 cut(s) 349, 686
ScaI AGTACT 1 cut(s) 181
SchI GAGTC 1 cut(s) 1002
ScrFI CCNGG 2 cut(s) 689, 1021
SfcI CTRYAG 3 cut(s) 399, 649, 729
SinI GGWCC 1 cut(s) 349
SmlI CTYRAG 1 cut(s) 851
SmoI CTYRAG 1 cut(s) 851
Sse9I AATT 9 cut(s) 89, 201, 299, 342, 423, 505, 548, 775, 837
SseBI AGGCCT 1 cut(s) 849
SsiI CCGC 2 cut(s) 569, 726
SspMI CTAG 2 cut(s) 533, 833
StuI AGGCCT 1 cut(s) 849
StyD4I CCNGG 2 cut(s) 687, 1019
StyI CCWWGG 2 cut(s) 392, 428
TaqI TCGA 4 cut(s) 116, 336, 358, 702
TasI AATT 9 cut(s) 89, 201, 299, 342, 423, 505, 548, 775, 837
TatI WGTACW 1 cut(s) 179
TauI GCSGC 2 cut(s) 572, 728
TfiI GAWTC 3 cut(s) 524, 761, 1184
Tru1I TTAA 3 cut(s) 27, 609, 750
Tru9I TTAA 3 cut(s) 27, 609, 750
TscAI CASTG 3 cut(s) 749, 1054, 1150
TseFI GTSAC 2 cut(s) 1060, 1174
TseI GCWGC 5 cut(s) 22, 410, 710, 728, 842
Tsp45I GTSAC 2 cut(s) 1060, 1174
TspDTI ATGAA 7 cut(s) 139, 431, 555, 862, 1101, 1137, 1214
TspRI CASTG 3 cut(s) 749, 1054, 1150
VpaK11BI GGWCC 1 cut(s) 349
XapI RAATTY 5 cut(s) 299, 342, 423, 505, 548
XbaI TCTAGA 1 cut(s) 532
XmnI GAANNNNTTC 2 cut(s) 210, 528
XspI CTAG 2 cut(s) 533, 833
ZrmI AGTACT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.