Rroxscaffold_7G00209540

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000135
Physical Location & Seq
Forward (+)
59735851 .. 59737314
1464 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00209540.1

Sequence Viewer

Length: 1020 bp
ATGGAAACTAAATCCTGCGAGCAGCTTGACATCTTTTTCTTTCCATACATGGCTCAAGGCCACAGCATACCGCTTGCAAATATAGCCAAACTATTTTCCTCTCATGGTGTCAAATCCACCATAATAACTACTCCACTCAATGCACCATTCTTTTCCAAAGCAACTCAAAGAACCAAAAGTTCGGAGTTTGATCATGAAATTGAACTTGTTCTCATCAAGTTCCCATCTGTCGAAGTTGGGTTGCCACGAGAATGTGAGAAGGCTGAGTTAGTTACAACACCAGAGATGGAAAGAAAGTTCTTCATTGCCGCCAGTTTGCTTGAACCACAGCTCCAGCAAATTTTAGACAAACATCGTCCTCATTGTCTTGTTGCTGATTCTTTCTTTCCTTTTGCTACAGATGTTGCTCCTAAGTTTGGAATTCCAAGGCTATATTTTCATGGAACTGATGCTGAAGCAGGATTCACCAAGTTCTTCAAAGCAGCCATAGAGAGTGAGGAAAGGAGCTATGGGGTCATTGTTAACAGCTTTTATGAACTTGAACCAGTTTATGCAGATCATTACAGGAAGGTGTTTGGGAGGAAGGCATGGCATATTGGCCAGCTCCTAGAAATTGCAGTTGGTCTTGAGGCTTCTGGACAAGACTTCATTTGGGTTGTCAAGAAAGAAAAGAAAGAAATAGAAGCCTGGTTGCCTGAAGGATTTGAGAAGAGAATGGAAGGTAAGGGACTTATTATCAGAGAGTGGGCGCCGCAACCGCAGATTCTTGAGCATGAAGCAACCGGAGGATTTGTGACTCATTGTAGGTGGAACTCTACCCTTGAAGGGGTGTCTGCAGGGCGTGAAGGGGAGGCCATAGAGAATGCTGTGACAAGAATCATGATGGGTGGTGAAGCAGAGGAAATGAGAAGCAGAGTTAAAGAGCTTGGAGAGATAGCAAGCAAGGCTGTTGAAGAAGGTGGTTCATCTTTCTCGGATGTAACTGCGCTAATTGGAGAGCTGAAGACCCTTGTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

339

Amino Acids

38.02

Weight (kDa)

5.43

Isoelectric Point (pI)

47.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 203 - 280 1.2e-07 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000135)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15480 AT2G15480 AT2G15490 AT2G15490 AT2G15490 AT4G34131 AT4G34135 AT4G34135 AT4G34138
fragaria_vesca FvH4_2g05600 FvH4_2g05601 FvH4_2g05602 FvH4_2g05603 FvH4_2g05604 FvH4_2g05630 FvH4_2g05660 FvH4_2g05662 FvH4_2g05663 FvH4_2g05671 FvH4_2g05680 FvH4_3g09760 FvH4_3g09780 FvH4_7g23180
malus_domestica MD00G1046200.v1.1 MD04G1214200.v1.1 MD05G1085700.v1.1 MD05G1085800.v1.1 MD05G1086200.v1.1 MD05G1086300.v1.1 MD05G1091500.v1.1 MD07G1007400.v1.1 MD07G1007500.v1.1 MD07G1007600.v1.1 MD17G1100000.v1.1 MD17G1100300.v1.1
prunus_persica Prupe.8G129800_v2.0.a1 Prupe.8G130100_v2.0.a1 Prupe.8G130200_v2.0.a1 Prupe.8G130300_v2.0.a1 Prupe.8G130400_v2.0.a1 Prupe.8G130500_v2.0.a1 Prupe.8G130600_v2.0.a1 Prupe.8G130700_v2.0.a1 Prupe.8G130800_v2.0.a1 Prupe.8G130900_v2.0.a1 Prupe.8G131000_v2.0.a1 Prupe.8G131000_v2.0.a1
pyrus_communis pycom05g08530 pycom05g08560 pycom07g00600 pycom07g00610 pycom07g00620 pycom17g09520 pycom2675g00060
rosa_chinensis RchiOBHm_Chr2g0111601 RchiOBHm_Chr2g0125751 RchiOBHm_Chr6g0248631 RchiOBHm_Chr6g0248721 RchiOBHm_Chr6g0255881 RchiOBHm_Chr6g0255911 RchiOBHm_Chr6g0255931 RchiOBHm_Chr6g0256041 RchiOBHm_Chr6g0256061 RchiOBHm_Chr6g0256081 RchiOBHm_Chr6g0256121 RchiOBHm_Chr6g0256131 RchiOBHm_Chr6g0256151 RchiOBHm_Chr6g0256161 RchiOBHm_Chr6g0256211 RchiOBHm_Chr6g0256221 RchiOBHm_Chr6g0256241 RchiOBHm_Chr6g0256251 RchiOBHm_Chr6g0256311 RchiOBHm_Chr6g0256331 RchiOBHm_Chr6g0256351 RchiOBHm_Chr6g0256361 RchiOBHm_Chr6g0256371 RchiOBHm_Chr6g0256411 RchiOBHm_Chr6g0256421 RchiOBHm_Chr6g0256431 RchiOBHm_Chr6g0256461 RchiOBHm_Chr6g0256471 RchiOBHm_Chr6g0256501 RchiOBHm_Chr6g0256511 RchiOBHm_Chr6g0256521 RchiOBHm_Chr6g0256531 RchiOBHm_Chr6g0256611 RchiOBHm_Chr6g0257761 RchiOBHm_Chr6g0276931
rosa_laevigata RLG00000014720 RLG00000014721 RLG00000014763 RLG00000014766 RLG00000014768 RLG00000014769 RLG00000014770 RLG00000014774 RLG00000014776 RLG00000014777 RLG00000014778 RLG00000014781 RLG00000014782 RLG00000014783 RLG00000014786 RLG00000014787 RLG00000014788 RLG00000014789 RLG00000014790 RLG00000014791 RLG00000014793 RLG00000014795 RLG00000014799 RLG00000014800 RLG00000014803 RLG00000014805 RLG00000015130 RLG00000015139
rosa_multiflora Rmu_co8160604.1_g000001 Rmu_sc0001598.1_g000016 Rmu_sc0001598.1_g000018 Rmu_sc0001598.1_g000024 Rmu_sc0001738.1_g000012 Rmu_sc0001738.1_g000013 Rmu_sc0001896.1_g000025 Rmu_sc0001896.1_g000029 Rmu_sc0001896.1_g000037 Rmu_sc0001896.1_g000039 Rmu_sc0002393.1_g000006 Rmu_sc0002553.1_g000039 Rmu_sc0004414.1_g000007 Rmu_sc0005080.1_g000001 Rmu_sc0005080.1_g000002 Rmu_sc0005080.1_g000003 Rmu_sc0005080.1_g000006 Rmu_sc0005080.1_g000007 Rmu_sc0005080.1_g000008 Rmu_sc0005080.1_g000010 Rmu_sc0005080.1_g000011 Rmu_sc0005080.1_g000012 Rmu_sc0008707.1_g000001 Rmu_sc0008707.1_g000003 Rmu_sc0008832.1_g000002 Rmu_sc0010826.1_g000012 Rmu_sc0011315.1_g000009 Rmu_sc0019708.1_g000001
rosa_roxburghii Rroxscaffold_2G00108580 Rroxscaffold_7G00208920 Rroxscaffold_7G00209240 Rroxscaffold_7G00209250 Rroxscaffold_7G00209260 Rroxscaffold_7G00209270 Rroxscaffold_7G00209360 Rroxscaffold_7G00209380 Rroxscaffold_7G00209390 Rroxscaffold_7G00209430 Rroxscaffold_7G00209440 Rroxscaffold_7G00209510 Rroxscaffold_7G00209540
rosa_rugosa Rorug05G0532600 Rorug05G0562400 Rorug05G0562500 Rorug05G0563000 Rorug05G0563100 Rorug05G0563300 Rorug05G0563300 Rorug05G0563600 Rorug05G0563700 Rorug05G0563800 Rorug05G0564000 Rorug05G0564100 Rorug05G0564200 Rorug05G0564300 Rorug05G0564400 Rorug05G0564500 Rorug05G0564600 Rorug05G0564600 Rorug05G0568600 Rorug05G0568700
rosa_wichuraiana Rw6G004280 Rw6G004380 Rw6G006940 Rw6G006950 Rw6G006960 Rw6G007000 Rw6G007090 Rw6G007100 Rw6G007110 Rw6G007150 Rw6G007160 Rw6G007170 Rw6G007200 Rw6G007210 Rw6G007240 Rw6G007250 Rw6G007280 Rw6G007290 Rw6G007300 Rw6G007310 Rw6G007320 Rw6G007340 Rw6G007350 Rw6G007360 Rw6G007380 Rw6G007660 Rw6G018660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 748
AciI CCGC 4 cut(s) 71, 309, 752, 758
AcoI YGGCCR 1 cut(s) 598
AcsI RAATTY 2 cut(s) 339, 420
AcuI CTGAAG 2 cut(s) 474, 717
AcyI GRCGYC 1 cut(s) 749
AfiI CCNNNNNNNGG 3 cut(s) 416, 825, 826
AgsI TTSAA 6 cut(s) 203, 323, 478, 542, 824, 953
AjnI CCWGG 1 cut(s) 686
AjuI GAANNNNNNNTTGG 2 cut(s) 603, 635
AloI GAACNNNNNNTCC 4 cut(s) 281, 313, 315, 347
AluBI AGCT 7 cut(s) 25, 331, 507, 528, 604, 925, 1000
AluI AGCT 7 cut(s) 25, 331, 507, 528, 604, 925, 1000
AoxI GGCC 3 cut(s) 58, 598, 852
ApeKI GCWGC 2 cut(s) 22, 482
ApoI RAATTY 2 cut(s) 339, 420
Asp700I GAANNNNTTC 1 cut(s) 207
AspLEI GCGC 2 cut(s) 751, 988
AsuHPI GGTGA 2 cut(s) 457, 902
BalI TGGCCA 1 cut(s) 600
BanI GGYRCC 1 cut(s) 748
BauI CACGAG 1 cut(s) 246
BbsI GAAGAC 1 cut(s) 1010
BbvI GCAGC 2 cut(s) 34, 494
BccI CCATC 3 cut(s) 232, 280, 877
BciT130I CCWGG 1 cut(s) 688
BclI TGATCA 1 cut(s) 190
BfaI CTAG 1 cut(s) 608
BfmI CTRYAG 2 cut(s) 396, 834
BfoI RGCGCY 1 cut(s) 752
BisI GCNGC 4 cut(s) 23, 309, 483, 752
BlsI GCNGC 4 cut(s) 24, 310, 484, 753
Bme1390I CCNGG 1 cut(s) 688
BmiI GGNNCC 1 cut(s) 750
BmrFI CCNGG 1 cut(s) 688
BmsI GCATC 1 cut(s) 439
BoxI GACNNNNGTC 1 cut(s) 1010
BpiI GAAGAC 1 cut(s) 1010
BpmI CTGGAG 1 cut(s) 317
BpuEI CTTGAG 3 cut(s) 39, 647, 788
BsaHI GRCGYC 1 cut(s) 749
BsaJI CCNNGG 1 cut(s) 425
BsaWI WCCGGW 1 cut(s) 782
BsaXI ACNNNNNCTCC 4 cut(s) 315, 345, 777, 807
Bsc4I CCNNNNNNNGG 3 cut(s) 416, 825, 826
Bse1I ACTGG 2 cut(s) 312, 545
Bse3DI GCAATG 1 cut(s) 303
BseBI CCWGG 1 cut(s) 688
BseDI CCNNGG 1 cut(s) 425
BseGI GGATG 1 cut(s) 982
BseLI CCNNNNNNNGG 3 cut(s) 416, 825, 826
BseMI GCAATG 1 cut(s) 303
BseMII CTCAG 1 cut(s) 255
BseNI ACTGG 2 cut(s) 312, 545
BseXI GCAGC 2 cut(s) 34, 494
BshFI GGCC 3 cut(s) 60, 600, 854
BshNI GGYRCC 1 cut(s) 748
BsiSI CCGG 1 cut(s) 783
BslFI GGGAC 1 cut(s) 741
BslI CCNNNNNNNGG 3 cut(s) 416, 825, 826
BsmFI GGGAC 1 cut(s) 741
BsmI GAATGC 1 cut(s) 868
BsnI GGCC 3 cut(s) 60, 600, 854
Bsp143I GATC 2 cut(s) 190, 556
BspACI CCGC 4 cut(s) 71, 309, 752, 758
BspANI GGCC 3 cut(s) 60, 600, 854
BspCNI CTCAG 1 cut(s) 256
BspHI TCATGA 2 cut(s) 193, 879
BspLI GGNNCC 1 cut(s) 750
BspMAI CTGCAG 1 cut(s) 838
BspT107I GGYRCC 1 cut(s) 748
BsrDI GCAATG 1 cut(s) 303
BsrI ACTGG 2 cut(s) 312, 545
BssECI CCNNGG 1 cut(s) 425
BssMI GATC 2 cut(s) 190, 556
BssNI GRCGYC 1 cut(s) 749
BssSI CACGAG 1 cut(s) 246
BssT1I CCWWGG 1 cut(s) 425
Bst2BI CACGAG 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 688
Bst6I CTCTTC 1 cut(s) 704
BstACI GRCGYC 1 cut(s) 749
BstC8I GCNNGC 4 cut(s) 20, 75, 602, 940
BstDEI CTNAG 2 cut(s) 264, 411
BstF5I GGATG 1 cut(s) 982
BstH2I RGCGCY 1 cut(s) 752
BstHHI GCGC 2 cut(s) 751, 988
BstKTI GATC 2 cut(s) 193, 559
BstMBI GATC 2 cut(s) 190, 556
BstMWI GCNNNNNNNGC 3 cut(s) 83, 757, 944
BstNI CCWGG 1 cut(s) 688
BstPAI GACNNNNGTC 1 cut(s) 1010
BstSCI CCNGG 1 cut(s) 686
BstSFI CTRYAG 2 cut(s) 396, 834
BstV1I GCAGC 2 cut(s) 34, 494
BstV2I GAAGAC 1 cut(s) 1010
BsuRI GGCC 3 cut(s) 60, 600, 854
BtsCI GGATG 1 cut(s) 982
Cac8I GCNNGC 4 cut(s) 20, 75, 602, 940
CciI TCATGA 2 cut(s) 193, 879
CfoI GCGC 2 cut(s) 751, 988
CviAII CATG 7 cut(s) 49, 104, 194, 440, 588, 773, 880
DdeI CTNAG 2 cut(s) 264, 411
DinI GGCGCC 1 cut(s) 750
DpnI GATC 2 cut(s) 192, 558
DpnII GATC 2 cut(s) 190, 556
EaeI YGGCCR 1 cut(s) 598
Eam1104I CTCTTC 1 cut(s) 704
EarI CTCTTC 1 cut(s) 704
Eco130I CCWWGG 1 cut(s) 425
Eco57I CTGAAG 2 cut(s) 474, 717
EcoRI GAATTC 1 cut(s) 420
EcoRII CCWGG 1 cut(s) 686
EcoT14I CCWWGG 1 cut(s) 425
EgeI GGCGCC 1 cut(s) 750
EheI GGCGCC 1 cut(s) 750
ErhI CCWWGG 1 cut(s) 425
FaeI CATG 7 cut(s) 52, 107, 197, 443, 591, 776, 883
FaqI GGGAC 1 cut(s) 741
FatI CATG 7 cut(s) 48, 103, 193, 439, 587, 772, 879
FbaI TGATCA 1 cut(s) 190
Fnu4HI GCNGC 4 cut(s) 23, 309, 483, 752
FokI GGATG 1 cut(s) 989
Fsp4HI GCNGC 4 cut(s) 23, 309, 483, 752
FspBI CTAG 1 cut(s) 608
GlaI GCGC 2 cut(s) 750, 987
GluI GCNGC 4 cut(s) 23, 309, 483, 752
GsuI CTGGAG 1 cut(s) 317
HaeII RGCGCY 1 cut(s) 752
HaeIII GGCC 3 cut(s) 60, 600, 854
HapII CCGG 1 cut(s) 783
HhaI GCGC 2 cut(s) 751, 988
Hin1I GRCGYC 1 cut(s) 749
Hin1II CATG 7 cut(s) 52, 107, 197, 443, 591, 776, 883
Hin6I GCGC 2 cut(s) 749, 986
HinP1I GCGC 2 cut(s) 749, 986
HincII GTYRAC 1 cut(s) 523
HindII GTYRAC 1 cut(s) 523
HinfI GANTC 5 cut(s) 377, 462, 763, 796, 876
HpaI GTTAAC 1 cut(s) 523
HpaII CCGG 1 cut(s) 783
HphI GGTGA 2 cut(s) 457, 902
Hpy166II GTNNAC 1 cut(s) 523
Hpy188I TCNGA 3 cut(s) 184, 740, 976
Hpy188III TCNNGA 7 cut(s) 194, 626, 636, 661, 767, 880, 1017
Hpy8I GTNNAC 1 cut(s) 523
HpyAV CCTTC 8 cut(s) 253, 562, 577, 692, 713, 818, 839, 950
HpyCH4V TGCA 5 cut(s) 77, 143, 554, 617, 836
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 757, 944
HpyF3I CTNAG 2 cut(s) 264, 411
Hsp92I GRCGYC 1 cut(s) 749
Hsp92II CATG 7 cut(s) 52, 107, 197, 443, 591, 776, 883
HspAI GCGC 2 cut(s) 749, 986
KasI GGCGCC 1 cut(s) 748
Ksp22I TGATCA 1 cut(s) 190
KspAI GTTAAC 1 cut(s) 523
Kzo9I GATC 2 cut(s) 190, 556
LmnI GCTCC 4 cut(s) 336, 412, 504, 609
Lsp1109I GCAGC 2 cut(s) 34, 494
LweI GCATC 1 cut(s) 439
MaeI CTAG 1 cut(s) 608
MaeIII GTNAC 4 cut(s) 271, 793, 868, 979
MalI GATC 2 cut(s) 192, 558
MboI GATC 2 cut(s) 190, 556
MboII GAAGA 5 cut(s) 292, 466, 721, 965, 1015
MlsI TGGCCA 1 cut(s) 600
MluCI AATT 5 cut(s) 198, 339, 420, 612, 990
MluNI TGGCCA 1 cut(s) 600
Mly113I GGCGCC 1 cut(s) 749
MlyI GAGTC 1 cut(s) 790
MnlI CCTC 8 cut(s) 109, 369, 490, 573, 622, 779, 844, 892
Mox20I TGGCCA 1 cut(s) 600
MroXI GAANNNNTTC 1 cut(s) 207
MscI TGGCCA 1 cut(s) 600
MseI TTAA 2 cut(s) 522, 918
MslI CAYNNNNRTG 1 cut(s) 250
Msp20I TGGCCA 1 cut(s) 600
MspI CCGG 1 cut(s) 783
MspR9I CCNGG 1 cut(s) 688
Mva1269I GAATGC 1 cut(s) 868
MvaI CCWGG 1 cut(s) 688
MwoI GCNNNNNNNGC 3 cut(s) 83, 757, 944
NarI GGCGCC 1 cut(s) 749
NdeII GATC 2 cut(s) 190, 556
NlaIII CATG 7 cut(s) 52, 107, 197, 443, 591, 776, 883
NlaIV GGNNCC 1 cut(s) 750
NmuCI GTSAC 2 cut(s) 793, 868
PagI TCATGA 2 cut(s) 193, 879
PctI GAATGC 1 cut(s) 868
PdmI GAANNNNTTC 1 cut(s) 207
PfeI GAWTC 4 cut(s) 377, 462, 763, 876
PkrI GCNGC 4 cut(s) 24, 310, 484, 753
PleI GAGTC 1 cut(s) 790
PluTI GGCGCC 1 cut(s) 752
PpsI GAGTC 1 cut(s) 790
PshAI GACNNNNGTC 1 cut(s) 1010
Psp6I CCWGG 1 cut(s) 686
PspGI CCWGG 1 cut(s) 686
PspN4I GGNNCC 1 cut(s) 750
PstI CTGCAG 1 cut(s) 838
RseI CAYNNNNRTG 1 cut(s) 250
SaqAI TTAA 2 cut(s) 522, 918
SatI GCNGC 4 cut(s) 23, 309, 483, 752
Sau3AI GATC 2 cut(s) 190, 556
SchI GAGTC 1 cut(s) 790
ScrFI CCNGG 1 cut(s) 688
SfaNI GCATC 1 cut(s) 439
SfcI CTRYAG 2 cut(s) 396, 834
SfoI GGCGCC 1 cut(s) 750
SmiMI CAYNNNNRTG 1 cut(s) 250
SmlI CTYRAG 3 cut(s) 54, 626, 767
SmoI CTYRAG 3 cut(s) 54, 626, 767
Sse9I AATT 5 cut(s) 198, 339, 420, 612, 990
SsiI CCGC 4 cut(s) 71, 309, 752, 758
SspDI GGCGCC 1 cut(s) 748
SspMI CTAG 1 cut(s) 608
StyD4I CCNGG 1 cut(s) 686
StyI CCWWGG 1 cut(s) 425
TaqI TCGA 1 cut(s) 231
TasI AATT 5 cut(s) 198, 339, 420, 612, 990
TauI GCSGC 2 cut(s) 311, 754
TfiI GAWTC 4 cut(s) 377, 462, 763, 876
Tru1I TTAA 2 cut(s) 522, 918
Tru9I TTAA 2 cut(s) 522, 918
TseFI GTSAC 2 cut(s) 793, 868
TseI GCWGC 2 cut(s) 22, 482
Tsp45I GTSAC 2 cut(s) 793, 868
TspDTI ATGAA 7 cut(s) 210, 292, 428, 549, 637, 789, 954
XapI RAATTY 2 cut(s) 339, 420
XmnI GAANNNNTTC 1 cut(s) 207
XspI CTAG 1 cut(s) 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.