Rmu_sc0001896.1_g000037

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001896.1
OG0000135
Physical Location & Seq
Forward (+)
105190 .. 106047
858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001896.1_g000037.1.cds

Sequence Viewer

Length: 858 bp
atggccatggaaaccaactcatgtcaacagcttcaaattttctttcttccatacatggctcgtggccacagcataccccttatagacatagccaaactattttcttctcgtggtgcaagatgcaccatagtaactactcccctcaatgccccgctcttctccaaagcaatccaaaaaggtgagattgaacttgttctcatcaagttcccatctactgaagctgggttgcctcaagactgcgaaagcgcagacttgattaccacacaagacacggtggaaaaatttatcaaagccacctttttacttgcaccagagcttgagaaggttttagacgaacatcgtcctcattgccttgttgcagatgctttctttacgtgggctacagatgttgcagccaagtttggaattccaaggctgtacttccatggaatcggtttcttcccattgtgtgcttcactgagtgtgatgatgtatcaacctcacacgaagtcgtcgtctgattcagaatcttttgtcattcctaatctccccgatgagatcaagatgcctagaagtcaattaccagtttttcccaatctagatggtgagtcagaattcatgaagatagtcaaattatccatagagagcgaagaaaggagctatggggttattgttaacagcttttatgaactagaaccagcttatgcagatcattataggaaggtgtttgggaggaaggcatggcatatcggcccagtttcgttatgcaataaggcagcagaggataaagtgttaattctacatgatgcaacaaacaacacatcaaccacaagatcatatcatacaacacacatcaagaacaataaaccagctgcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

285

Amino Acids

31.93

Weight (kDa)

6.21

Isoelectric Point (pI)

50.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000135)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15480 AT2G15480 AT2G15490 AT2G15490 AT2G15490 AT4G34131 AT4G34135 AT4G34135 AT4G34138
fragaria_vesca FvH4_2g05600 FvH4_2g05601 FvH4_2g05602 FvH4_2g05603 FvH4_2g05604 FvH4_2g05630 FvH4_2g05660 FvH4_2g05662 FvH4_2g05663 FvH4_2g05671 FvH4_2g05680 FvH4_3g09760 FvH4_3g09780 FvH4_7g23180
malus_domestica MD00G1046200.v1.1 MD04G1214200.v1.1 MD05G1085700.v1.1 MD05G1085800.v1.1 MD05G1086200.v1.1 MD05G1086300.v1.1 MD05G1091500.v1.1 MD07G1007400.v1.1 MD07G1007500.v1.1 MD07G1007600.v1.1 MD17G1100000.v1.1 MD17G1100300.v1.1
prunus_persica Prupe.8G129800_v2.0.a1 Prupe.8G130100_v2.0.a1 Prupe.8G130200_v2.0.a1 Prupe.8G130300_v2.0.a1 Prupe.8G130400_v2.0.a1 Prupe.8G130500_v2.0.a1 Prupe.8G130600_v2.0.a1 Prupe.8G130700_v2.0.a1 Prupe.8G130800_v2.0.a1 Prupe.8G130900_v2.0.a1 Prupe.8G131000_v2.0.a1 Prupe.8G131000_v2.0.a1
pyrus_communis pycom05g08530 pycom05g08560 pycom07g00600 pycom07g00610 pycom07g00620 pycom17g09520 pycom2675g00060
rosa_chinensis RchiOBHm_Chr2g0111601 RchiOBHm_Chr2g0125751 RchiOBHm_Chr6g0248631 RchiOBHm_Chr6g0248721 RchiOBHm_Chr6g0255881 RchiOBHm_Chr6g0255911 RchiOBHm_Chr6g0255931 RchiOBHm_Chr6g0256041 RchiOBHm_Chr6g0256061 RchiOBHm_Chr6g0256081 RchiOBHm_Chr6g0256121 RchiOBHm_Chr6g0256131 RchiOBHm_Chr6g0256151 RchiOBHm_Chr6g0256161 RchiOBHm_Chr6g0256211 RchiOBHm_Chr6g0256221 RchiOBHm_Chr6g0256241 RchiOBHm_Chr6g0256251 RchiOBHm_Chr6g0256311 RchiOBHm_Chr6g0256331 RchiOBHm_Chr6g0256351 RchiOBHm_Chr6g0256361 RchiOBHm_Chr6g0256371 RchiOBHm_Chr6g0256411 RchiOBHm_Chr6g0256421 RchiOBHm_Chr6g0256431 RchiOBHm_Chr6g0256461 RchiOBHm_Chr6g0256471 RchiOBHm_Chr6g0256501 RchiOBHm_Chr6g0256511 RchiOBHm_Chr6g0256521 RchiOBHm_Chr6g0256531 RchiOBHm_Chr6g0256611 RchiOBHm_Chr6g0257761 RchiOBHm_Chr6g0276931
rosa_laevigata RLG00000014720 RLG00000014721 RLG00000014763 RLG00000014766 RLG00000014768 RLG00000014769 RLG00000014770 RLG00000014774 RLG00000014776 RLG00000014777 RLG00000014778 RLG00000014781 RLG00000014782 RLG00000014783 RLG00000014786 RLG00000014787 RLG00000014788 RLG00000014789 RLG00000014790 RLG00000014791 RLG00000014793 RLG00000014795 RLG00000014799 RLG00000014800 RLG00000014803 RLG00000014805 RLG00000015130 RLG00000015139
rosa_multiflora Rmu_co8160604.1_g000001 Rmu_sc0001598.1_g000016 Rmu_sc0001598.1_g000018 Rmu_sc0001598.1_g000024 Rmu_sc0001738.1_g000012 Rmu_sc0001738.1_g000013 Rmu_sc0001896.1_g000025 Rmu_sc0001896.1_g000029 Rmu_sc0001896.1_g000037 Rmu_sc0001896.1_g000039 Rmu_sc0002393.1_g000006 Rmu_sc0002553.1_g000039 Rmu_sc0004414.1_g000007 Rmu_sc0005080.1_g000001 Rmu_sc0005080.1_g000002 Rmu_sc0005080.1_g000003 Rmu_sc0005080.1_g000006 Rmu_sc0005080.1_g000007 Rmu_sc0005080.1_g000008 Rmu_sc0005080.1_g000010 Rmu_sc0005080.1_g000011 Rmu_sc0005080.1_g000012 Rmu_sc0008707.1_g000001 Rmu_sc0008707.1_g000003 Rmu_sc0008832.1_g000002 Rmu_sc0010826.1_g000012 Rmu_sc0011315.1_g000009 Rmu_sc0019708.1_g000001
rosa_roxburghii Rroxscaffold_2G00108580 Rroxscaffold_7G00208920 Rroxscaffold_7G00209240 Rroxscaffold_7G00209250 Rroxscaffold_7G00209260 Rroxscaffold_7G00209270 Rroxscaffold_7G00209360 Rroxscaffold_7G00209380 Rroxscaffold_7G00209390 Rroxscaffold_7G00209430 Rroxscaffold_7G00209440 Rroxscaffold_7G00209510 Rroxscaffold_7G00209540
rosa_rugosa Rorug05G0532600 Rorug05G0562400 Rorug05G0562500 Rorug05G0563000 Rorug05G0563100 Rorug05G0563300 Rorug05G0563300 Rorug05G0563600 Rorug05G0563700 Rorug05G0563800 Rorug05G0564000 Rorug05G0564100 Rorug05G0564200 Rorug05G0564300 Rorug05G0564400 Rorug05G0564500 Rorug05G0564600 Rorug05G0564600 Rorug05G0568600 Rorug05G0568700
rosa_wichuraiana Rw6G004280 Rw6G004380 Rw6G006940 Rw6G006950 Rw6G006960 Rw6G007000 Rw6G007090 Rw6G007100 Rw6G007110 Rw6G007150 Rw6G007160 Rw6G007170 Rw6G007200 Rw6G007210 Rw6G007240 Rw6G007250 Rw6G007280 Rw6G007290 Rw6G007300 Rw6G007310 Rw6G007320 Rw6G007340 Rw6G007350 Rw6G007360 Rw6G007380 Rw6G007660 Rw6G018660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 154
AciI CCGC 1 cut(s) 152
AcoI YGGCCR 2 cut(s) 3, 64
AcsI RAATTY 4 cut(s) 36, 281, 405, 593
AcuI CTGAAG 1 cut(s) 237
AdeI CACNNNGTG 1 cut(s) 461
AfaI GTAC 1 cut(s) 419
AgsI TTSAA 2 cut(s) 35, 188
AluBI AGCT 7 cut(s) 31, 221, 316, 639, 660, 680, 851
AluI AGCT 7 cut(s) 31, 221, 316, 639, 660, 680, 851
AoxI GGCC 3 cut(s) 3, 64, 730
ApeKI GCWGC 3 cut(s) 392, 755, 851
ApoI RAATTY 4 cut(s) 36, 281, 405, 593
ArsI GACNNNNNNTTYG 2 cut(s) 479, 511
Asp700I GAANNNNTTC 1 cut(s) 192
AspLEI GCGC 1 cut(s) 248
AspS9I GGNCC 1 cut(s) 731
AsuHPI GGTGA 2 cut(s) 191, 596
BalI TGGCCA 2 cut(s) 5, 66
BauI CACGAG 2 cut(s) 60, 108
BbvI GCAGC 3 cut(s) 404, 767, 838
BccI CCATC 2 cut(s) 217, 575
BfaI CTAG 3 cut(s) 549, 578, 671
BfmI CTRYAG 1 cut(s) 381
BisI GCNGC 3 cut(s) 393, 756, 852
BlsI GCNGC 3 cut(s) 394, 757, 853
BmgT120I GGNCC 1 cut(s) 731
BmrI ACTGGG 1 cut(s) 728
BmsI GCATC 4 cut(s) 110, 352, 534, 775
BmuI ACTGGG 1 cut(s) 728
BpuEI CTTGAG 2 cut(s) 216, 338
BsaAI YACGTR 1 cut(s) 375
BsaJI CCNNGG 3 cut(s) 6, 410, 424
Bse1I ACTGG 2 cut(s) 563, 734
Bse3DI GCAATG 1 cut(s) 346
BseDI CCNNGG 3 cut(s) 6, 410, 424
BseMI GCAATG 1 cut(s) 346
BseMII CTCAG 1 cut(s) 449
BseNI ACTGG 2 cut(s) 563, 734
BseXI GCAGC 3 cut(s) 404, 767, 838
BseYI CCCAGC 1 cut(s) 221
BshFI GGCC 3 cut(s) 5, 66, 732
BsnI GGCC 3 cut(s) 5, 66, 732
Bsp143I GATC 3 cut(s) 537, 688, 812
Bsp19I CCATGG 2 cut(s) 6, 424
BspACI CCGC 1 cut(s) 152
BspANI GGCC 3 cut(s) 5, 66, 732
BspCNI CTCAG 1 cut(s) 450
BspHI TCATGA 1 cut(s) 597
BspQI GCTCTTC 1 cut(s) 161
BsrBI CCGCTC 1 cut(s) 154
BsrDI GCAATG 1 cut(s) 346
BsrI ACTGG 2 cut(s) 563, 734
BssECI CCNNGG 3 cut(s) 6, 410, 424
BssMI GATC 3 cut(s) 537, 688, 812
BssSI CACGAG 2 cut(s) 60, 108
BssT1I CCWWGG 3 cut(s) 6, 410, 424
Bst2BI CACGAG 2 cut(s) 60, 108
Bst4CI ACNGT 1 cut(s) 274
Bst6I CTCTTC 1 cut(s) 161
BstBAI YACGTR 1 cut(s) 375
BstDEI CTNAG 1 cut(s) 458
BstDSI CCRYGG 2 cut(s) 6, 424
BstHHI GCGC 1 cut(s) 248
BstKTI GATC 3 cut(s) 540, 691, 815
BstMBI GATC 3 cut(s) 537, 688, 812
BstSFI CTRYAG 1 cut(s) 381
BstV1I GCAGC 3 cut(s) 404, 767, 838
BsuRI GGCC 3 cut(s) 5, 66, 732
BtgI CCRYGG 2 cut(s) 6, 424
BtsIMutI CAGTG 1 cut(s) 455
CciI TCATGA 1 cut(s) 597
CfoI GCGC 1 cut(s) 248
Cfr13I GGNCC 1 cut(s) 731
Csp6I GTAC 1 cut(s) 418
CviAII CATG 7 cut(s) 7, 21, 55, 425, 598, 720, 782
CviQI GTAC 1 cut(s) 418
DdeI CTNAG 1 cut(s) 458
DpnI GATC 3 cut(s) 539, 690, 814
DpnII GATC 3 cut(s) 537, 688, 812
DraIII CACNNNGTG 1 cut(s) 461
EaeI YGGCCR 2 cut(s) 3, 64
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
Eco130I CCWWGG 3 cut(s) 6, 410, 424
Eco57I CTGAAG 1 cut(s) 237
EcoRI GAATTC 2 cut(s) 405, 593
EcoT14I CCWWGG 3 cut(s) 6, 410, 424
ErhI CCWWGG 3 cut(s) 6, 410, 424
FaeI CATG 7 cut(s) 10, 24, 58, 428, 601, 723, 785
FatI CATG 7 cut(s) 6, 20, 54, 424, 597, 719, 781
FauI CCCGC 1 cut(s) 159
Fnu4HI GCNGC 3 cut(s) 393, 756, 852
Fsp4HI GCNGC 3 cut(s) 393, 756, 852
FspBI CTAG 3 cut(s) 549, 578, 671
GlaI GCGC 1 cut(s) 247
GluI GCNGC 3 cut(s) 393, 756, 852
GsaI CCCAGC 1 cut(s) 225
HaeIII GGCC 3 cut(s) 5, 66, 732
HhaI GCGC 1 cut(s) 248
Hin1II CATG 7 cut(s) 10, 24, 58, 428, 601, 723, 785
Hin6I GCGC 1 cut(s) 246
HinP1I GCGC 1 cut(s) 246
HincII GTYRAC 2 cut(s) 26, 655
HindII GTYRAC 2 cut(s) 26, 655
HinfI GANTC 4 cut(s) 429, 500, 506, 587
HpaI GTTAAC 1 cut(s) 655
HphI GGTGA 2 cut(s) 191, 596
Hpy166II GTNNAC 2 cut(s) 26, 655
Hpy188I TCNGA 3 cut(s) 499, 505, 592
Hpy188III TCNNGA 5 cut(s) 233, 541, 578, 598, 835
Hpy8I GTNNAC 2 cut(s) 26, 655
Hpy99I CGWCG 1 cut(s) 496
HpyAV CCTTC 3 cut(s) 316, 694, 709
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4IV ACGT 1 cut(s) 374
HpyCH4V TGCA 9 cut(s) 116, 123, 308, 359, 392, 686, 747, 788, 854
HpyF3I CTNAG 1 cut(s) 458
HpySE526I ACGT 1 cut(s) 374
Hsp92II CATG 7 cut(s) 10, 24, 58, 428, 601, 723, 785
HspAI GCGC 1 cut(s) 246
KspAI GTTAAC 1 cut(s) 655
Kzo9I GATC 3 cut(s) 537, 688, 812
LguI GCTCTTC 1 cut(s) 161
LmnI GCTCC 1 cut(s) 636
LpnPI CCDG 5 cut(s) 207, 324, 576, 690, 747
Lsp1109I GCAGC 3 cut(s) 404, 767, 838
LweI GCATC 4 cut(s) 110, 352, 534, 775
MaeI CTAG 3 cut(s) 549, 578, 671
MaeII ACGT 1 cut(s) 374
MaeIII GTNAC 1 cut(s) 130
MalI GATC 3 cut(s) 539, 690, 814
MbiI CCGCTC 1 cut(s) 154
MboI GATC 3 cut(s) 537, 688, 812
MboII GAAGA 6 cut(s) 38, 96, 148, 430, 613, 641
MlsI TGGCCA 2 cut(s) 5, 66
MluCI AATT 7 cut(s) 36, 281, 405, 557, 593, 611, 774
MluNI TGGCCA 2 cut(s) 5, 66
MlyI GAGTC 1 cut(s) 596
MnlI CCTC 6 cut(s) 152, 240, 354, 489, 705, 754
Mox20I TGGCCA 2 cut(s) 5, 66
MroXI GAANNNNTTC 1 cut(s) 192
MscI TGGCCA 2 cut(s) 5, 66
MseI TTAA 2 cut(s) 654, 773
Msp20I TGGCCA 2 cut(s) 5, 66
MspA1I CMGCKG 1 cut(s) 851
NcoI CCATGG 2 cut(s) 6, 424
NdeII GATC 3 cut(s) 537, 688, 812
NlaIII CATG 7 cut(s) 10, 24, 58, 428, 601, 723, 785
PagI TCATGA 1 cut(s) 597
PciSI GCTCTTC 1 cut(s) 161
PcsI WCGNNNNNNNCGW 1 cut(s) 491
PdmI GAANNNNTTC 1 cut(s) 192
PfeI GAWTC 3 cut(s) 429, 500, 506
PkrI GCNGC 3 cut(s) 394, 757, 853
PleI GAGTC 1 cut(s) 595
PpsI GAGTC 1 cut(s) 595
Ppu21I YACGTR 1 cut(s) 375
PspFI CCCAGC 1 cut(s) 221
PspPI GGNCC 1 cut(s) 731
PvuII CAGCTG 1 cut(s) 851
RsaI GTAC 1 cut(s) 419
RsaNI GTAC 1 cut(s) 418
SapI GCTCTTC 1 cut(s) 161
SaqAI TTAA 2 cut(s) 654, 773
SatI GCNGC 3 cut(s) 393, 756, 852
Sau3AI GATC 3 cut(s) 537, 688, 812
Sau96I GGNCC 1 cut(s) 731
SchI GAGTC 1 cut(s) 596
SfaNI GCATC 4 cut(s) 110, 352, 534, 775
SfcI CTRYAG 1 cut(s) 381
SmlI CTYRAG 2 cut(s) 231, 317
SmoI CTYRAG 2 cut(s) 231, 317
Sse9I AATT 7 cut(s) 36, 281, 405, 557, 593, 611, 774
SsiI CCGC 1 cut(s) 152
SspMI CTAG 3 cut(s) 549, 578, 671
StyI CCWWGG 3 cut(s) 6, 410, 424
TaaI ACNGT 1 cut(s) 274
TaiI ACGT 1 cut(s) 377
TasI AATT 7 cut(s) 36, 281, 405, 557, 593, 611, 774
TatI WGTACW 1 cut(s) 417
TfiI GAWTC 3 cut(s) 429, 500, 506
Tru1I TTAA 2 cut(s) 654, 773
Tru9I TTAA 2 cut(s) 654, 773
TscAI CASTG 1 cut(s) 462
TseI GCWGC 3 cut(s) 392, 755, 851
TspDTI ATGAA 3 cut(s) 586, 614, 681
TspRI CASTG 1 cut(s) 462
XapI RAATTY 4 cut(s) 36, 281, 405, 593
XbaI TCTAGA 1 cut(s) 577
XmnI GAANNNNTTC 1 cut(s) 192
XspI CTAG 3 cut(s) 549, 578, 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.