Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001738.1

Orthogroup ID

OG0000135

Physical Location & Seq

Genomic Coordinates Reverse (-)

29879 .. 30697

Gene Structure 819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001738.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

atgggagcactaagtaggagctatggggttcttgttaacagcttttctgaacttgaatctgcgtatgctgatcattttagcaaggttttggggataagatcttggcatataggcccactttggttatgtaatgagggtgacattgaagttgaagatcaaaaatgctctattgatgtacacgaatgcatgaagtggcttgacacaaagaagcccaattcagttgtttatgtatgctttgggagtttggcaaattttggtgatgctcagctcctagaaattgcattaggtcttgagagttcagggtaccatttcatttgggttgtcaataaacaaaagaatattgaagaaaactggttgcctcaaggatatgaagagaggattgaagggaaaggaatgattataagagggtgggcgccgcaagtgaagattctttcacatgaagcagtgggagggtttgtgactcattgtgggtggaactcgacacttgaagcagtgtgtgctggtgcgcccatggtgacatggcctctgttttcagagcagttttacaatgagaagttgataacccaagtgcttgggatcggggttggtgttggtgctcaagaatggactagagtggatagggagattgtgaagagtgaggacatagagaaggctgtgacaaaggtgttgggtgaagaagcagaggaaatgacaagcagagccaggggttatgcaataatggcaagaagggctattgaagaagggggttcatcttactcggatcttattggtttgattgaagaattaaggtctcatgccattactagaggaacaatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0008194 GO:0009605 GO:0009607 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050896 GO:0051704 GO:0051707 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

272

Amino Acids

30.28

Weight (kDa)

5.04

Isoelectric Point (pI)

49.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15480 AT2G15480 AT2G15490 AT2G15490 AT2G15490 AT4G34131 AT4G34135 AT4G34135 AT4G34138
fragaria_vesca	FvH4_2g05600 FvH4_2g05601 FvH4_2g05602 FvH4_2g05603 FvH4_2g05604 FvH4_2g05630 FvH4_2g05660 FvH4_2g05662 FvH4_2g05663 FvH4_2g05671 FvH4_2g05680 FvH4_3g09760 FvH4_3g09780 FvH4_7g23180
malus_domestica	MD00G1046200.v1.1 MD04G1214200.v1.1 MD05G1085700.v1.1 MD05G1085800.v1.1 MD05G1086200.v1.1 MD05G1086300.v1.1 MD05G1091500.v1.1 MD07G1007400.v1.1 MD07G1007500.v1.1 MD07G1007600.v1.1 MD17G1100000.v1.1 MD17G1100300.v1.1
prunus_persica	Prupe.8G129800_v2.0.a1 Prupe.8G130100_v2.0.a1 Prupe.8G130200_v2.0.a1 Prupe.8G130300_v2.0.a1 Prupe.8G130400_v2.0.a1 Prupe.8G130500_v2.0.a1 Prupe.8G130600_v2.0.a1 Prupe.8G130700_v2.0.a1 Prupe.8G130800_v2.0.a1 Prupe.8G130900_v2.0.a1 Prupe.8G131000_v2.0.a1 Prupe.8G131000_v2.0.a1
pyrus_communis	pycom05g08530 pycom05g08560 pycom07g00600 pycom07g00610 pycom07g00620 pycom17g09520 pycom2675g00060
rosa_chinensis	RchiOBHm_Chr2g0111601 RchiOBHm_Chr2g0125751 RchiOBHm_Chr6g0248631 RchiOBHm_Chr6g0248721 RchiOBHm_Chr6g0255881 RchiOBHm_Chr6g0255911 RchiOBHm_Chr6g0255931 RchiOBHm_Chr6g0256041 RchiOBHm_Chr6g0256061 RchiOBHm_Chr6g0256081 RchiOBHm_Chr6g0256121 RchiOBHm_Chr6g0256131 RchiOBHm_Chr6g0256151 RchiOBHm_Chr6g0256161 RchiOBHm_Chr6g0256211 RchiOBHm_Chr6g0256221 RchiOBHm_Chr6g0256241 RchiOBHm_Chr6g0256251 RchiOBHm_Chr6g0256311 RchiOBHm_Chr6g0256331 RchiOBHm_Chr6g0256351 RchiOBHm_Chr6g0256361 RchiOBHm_Chr6g0256371 RchiOBHm_Chr6g0256411 RchiOBHm_Chr6g0256421 RchiOBHm_Chr6g0256431 RchiOBHm_Chr6g0256461 RchiOBHm_Chr6g0256471 RchiOBHm_Chr6g0256501 RchiOBHm_Chr6g0256511 RchiOBHm_Chr6g0256521 RchiOBHm_Chr6g0256531 RchiOBHm_Chr6g0256611 RchiOBHm_Chr6g0257761 RchiOBHm_Chr6g0276931
rosa_laevigata	RLG00000014720 RLG00000014721 RLG00000014763 RLG00000014766 RLG00000014768 RLG00000014769 RLG00000014770 RLG00000014774 RLG00000014776 RLG00000014777 RLG00000014778 RLG00000014781 RLG00000014782 RLG00000014783 RLG00000014786 RLG00000014787 RLG00000014788 RLG00000014789 RLG00000014790 RLG00000014791 RLG00000014793 RLG00000014795 RLG00000014799 RLG00000014800 RLG00000014803 RLG00000014805 RLG00000015130 RLG00000015139
rosa_multiflora	Rmu_co8160604.1_g000001 Rmu_sc0001598.1_g000016 Rmu_sc0001598.1_g000018 Rmu_sc0001598.1_g000024 Rmu_sc0001738.1_g000012 Rmu_sc0001738.1_g000013 Rmu_sc0001896.1_g000025 Rmu_sc0001896.1_g000029 Rmu_sc0001896.1_g000037 Rmu_sc0001896.1_g000039 Rmu_sc0002393.1_g000006 Rmu_sc0002553.1_g000039 Rmu_sc0004414.1_g000007 Rmu_sc0005080.1_g000001 Rmu_sc0005080.1_g000002 Rmu_sc0005080.1_g000003 Rmu_sc0005080.1_g000006 Rmu_sc0005080.1_g000007 Rmu_sc0005080.1_g000008 Rmu_sc0005080.1_g000010 Rmu_sc0005080.1_g000011 Rmu_sc0005080.1_g000012 Rmu_sc0008707.1_g000001 Rmu_sc0008707.1_g000003 Rmu_sc0008832.1_g000002 Rmu_sc0010826.1_g000012 Rmu_sc0011315.1_g000009 Rmu_sc0019708.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108580 Rroxscaffold_7G00208920 Rroxscaffold_7G00209240 Rroxscaffold_7G00209250 Rroxscaffold_7G00209260 Rroxscaffold_7G00209270 Rroxscaffold_7G00209360 Rroxscaffold_7G00209380 Rroxscaffold_7G00209390 Rroxscaffold_7G00209430 Rroxscaffold_7G00209440 Rroxscaffold_7G00209510 Rroxscaffold_7G00209540
rosa_rugosa	Rorug05G0532600 Rorug05G0562400 Rorug05G0562500 Rorug05G0563000 Rorug05G0563100 Rorug05G0563300 Rorug05G0563300 Rorug05G0563600 Rorug05G0563700 Rorug05G0563800 Rorug05G0564000 Rorug05G0564100 Rorug05G0564200 Rorug05G0564300 Rorug05G0564400 Rorug05G0564500 Rorug05G0564600 Rorug05G0564600 Rorug05G0568600 Rorug05G0568700
rosa_wichuraiana	Rw6G004280 Rw6G004380 Rw6G006940 Rw6G006950 Rw6G006960 Rw6G007000 Rw6G007090 Rw6G007100 Rw6G007110 Rw6G007150 Rw6G007160 Rw6G007170 Rw6G007200 Rw6G007210 Rw6G007240 Rw6G007250 Rw6G007280 Rw6G007290 Rw6G007300 Rw6G007310 Rw6G007320 Rw6G007340 Rw6G007350 Rw6G007360 Rw6G007380 Rw6G007660 Rw6G018660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	401
Acc65I	GGTACC	1 cut(s)	303
AccB1I	GGYRCC	2 cut(s)	303, 412
AciI	CCGC	1 cut(s)	416
AclWI	GGATC	2 cut(s)	584, 768
AcsI	RAATTY	1 cut(s)	250
AcyI	GRCGYC	1 cut(s)	413
AfaI	GTAC	2 cut(s)	177, 305
AgsI	TTSAA	8 cut(s)	56, 146, 152, 344, 383, 488, 737, 779
AjnI	CCWGG	1 cut(s)	701
AluBI	AGCT	3 cut(s)	21, 42, 268
AluI	AGCT	3 cut(s)	21, 42, 268
Alw21I	GWGCWC	2 cut(s)	10, 598
Alw26I	GTCTC	1 cut(s)	795
AlwI	GGATC	2 cut(s)	584, 768
AoxI	GGCC	2 cut(s)	112, 521
ApoI	RAATTY	1 cut(s)	250
Asp718I	GGTACC	1 cut(s)	303
AspLEI	GCGC	2 cut(s)	415, 508
AspS9I	GGNCC	1 cut(s)	113
AsuHPI	GGTGA	4 cut(s)	149, 269, 526, 683
BanI	GGYRCC	2 cut(s)	303, 412
Bbv12I	GWGCWC	2 cut(s)	10, 598
BciT130I	CCWGG	1 cut(s)	703
BclI	TGATCA	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	795
BfaI	CTAG	3 cut(s)	272, 609, 804
BfoI	RGCGCY	1 cut(s)	416
BglII	AGATCT	1 cut(s)	98
BisI	GCNGC	1 cut(s)	416
BlpI	GCTNAGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	417
Bme1390I	CCNGG	1 cut(s)	703
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	2 cut(s)	305, 414
BmrFI	CCNGG	1 cut(s)	703
BmsI	GCATC	1 cut(s)	250
Bpu1102I	GCTNAGC	1 cut(s)	264
BpuEI	CTTGAG	3 cut(s)	311, 345, 582
BsaHI	GRCGYC	1 cut(s)	413
BsaI	GGTCTC	1 cut(s)	795
BsaJI	CCNNGG	2 cut(s)	510, 702
BsaXI	ACNNNNNCTCC	2 cut(s)	441, 471
Bse1I	ACTGG	1 cut(s)	356
BseBI	CCWGG	1 cut(s)	703
BseDI	CCNNGG	2 cut(s)	510, 702
BseMII	CTCAG	1 cut(s)	278
BseNI	ACTGG	1 cut(s)	356
BshFI	GGCC	2 cut(s)	114, 523
BshNI	GGYRCC	2 cut(s)	303, 412
BsiHKAI	GWGCWC	2 cut(s)	10, 598
BsmAI	GTCTC	1 cut(s)	795
BsmI	GAATGC	1 cut(s)	188
BsnI	GGCC	2 cut(s)	114, 523
Bso31I	GGTCTC	1 cut(s)	795
Bsp1286I	GDGCHC	2 cut(s)	10, 598
Bsp1407I	TGTACA	1 cut(s)	175
Bsp143I	GATC	5 cut(s)	70, 98, 154, 576, 760
Bsp1720I	GCTNAGC	1 cut(s)	264
Bsp19I	CCATGG	1 cut(s)	510
BspACI	CCGC	1 cut(s)	416
BspANI	GGCC	2 cut(s)	114, 523
BspCNI	CTCAG	1 cut(s)	277
BspLI	GGNNCC	2 cut(s)	305, 414
BspPI	GGATC	2 cut(s)	584, 768
BspT107I	GGYRCC	2 cut(s)	303, 412
BspTNI	GGTCTC	1 cut(s)	795
BsrGI	TGTACA	1 cut(s)	175
BsrI	ACTGG	1 cut(s)	356
BssECI	CCNNGG	2 cut(s)	510, 702
BssMI	GATC	5 cut(s)	70, 98, 154, 576, 760
BssNI	GRCGYC	1 cut(s)	413
BssT1I	CCWWGG	1 cut(s)	510
Bst2UI	CCWGG	1 cut(s)	703
Bst6I	CTCTTC	2 cut(s)	366, 626
BstACI	GRCGYC	1 cut(s)	413
BstAPI	GCANNNNNTGC	1 cut(s)	497
BstAUI	TGTACA	1 cut(s)	175
BstDEI	CTNAG	2 cut(s)	11, 264
BstDSI	CCRYGG	1 cut(s)	510
BstH2I	RGCGCY	1 cut(s)	416
BstHHI	GCGC	2 cut(s)	415, 508
BstKTI	GATC	5 cut(s)	73, 101, 157, 579, 763
BstMAI	GTCTC	1 cut(s)	795
BstMBI	GATC	5 cut(s)	70, 98, 154, 576, 760
BstMWI	GCNNNNNNNGC	3 cut(s)	497, 719, 728
BstNI	CCWGG	1 cut(s)	703
BstSCI	CCNGG	1 cut(s)	701
BstX2I	RGATCY	2 cut(s)	98, 760
BstXI	CCANNNNNNTGG	1 cut(s)	572
BstYI	RGATCY	2 cut(s)	98, 760
BsuRI	GGCC	2 cut(s)	114, 523
BtgI	CCRYGG	1 cut(s)	510
BtsI	GCAGTG	2 cut(s)	450, 498
BtsIMutI	CAGTG	2 cut(s)	450, 498
CfoI	GCGC	2 cut(s)	415, 508
Cfr13I	GGNCC	1 cut(s)	113
Csp6I	GTAC	2 cut(s)	176, 304
CviAII	CATG	5 cut(s)	187, 437, 511, 519, 794
CviQI	GTAC	2 cut(s)	176, 304
DdeI	CTNAG	2 cut(s)	11, 264
DinI	GGCGCC	1 cut(s)	414
DpnI	GATC	5 cut(s)	72, 100, 156, 578, 762
DpnII	GATC	5 cut(s)	70, 98, 154, 576, 760
Eam1104I	CTCTTC	2 cut(s)	366, 626
EarI	CTCTTC	2 cut(s)	366, 626
Eco130I	CCWWGG	1 cut(s)	510
Eco31I	GGTCTC	1 cut(s)	795
EcoRII	CCWGG	1 cut(s)	701
EcoT14I	CCWWGG	1 cut(s)	510
EcoT22I	ATGCAT	1 cut(s)	188
EgeI	GGCGCC	1 cut(s)	414
EheI	GGCGCC	1 cut(s)	414
ErhI	CCWWGG	1 cut(s)	510
FaeI	CATG	5 cut(s)	190, 440, 514, 522, 797
FatI	CATG	5 cut(s)	186, 436, 510, 518, 793
FbaI	TGATCA	1 cut(s)	70
Fnu4HI	GCNGC	1 cut(s)	416
Fsp4HI	GCNGC	1 cut(s)	416
FspBI	CTAG	3 cut(s)	272, 609, 804
GlaI	GCGC	2 cut(s)	414, 507
GluI	GCNGC	1 cut(s)	416
HaeII	RGCGCY	1 cut(s)	416
HaeIII	GGCC	2 cut(s)	114, 523
HhaI	GCGC	2 cut(s)	415, 508
Hin1I	GRCGYC	1 cut(s)	413
Hin1II	CATG	5 cut(s)	190, 440, 514, 522, 797
Hin6I	GCGC	2 cut(s)	413, 506
HinP1I	GCGC	2 cut(s)	413, 506
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	3 cut(s)	56, 427, 460
HpaI	GTTAAC	1 cut(s)	37
HphI	GGTGA	4 cut(s)	149, 269, 526, 683
Hpy166II	GTNNAC	2 cut(s)	37, 178
Hpy188I	TCNGA	3 cut(s)	49, 535, 760
Hpy188III	TCNNGA	2 cut(s)	290, 599
Hpy8I	GTNNAC	2 cut(s)	37, 178
HpyAV	CCTTC	4 cut(s)	377, 643, 720, 734
HpyCH4V	TGCA	3 cut(s)	186, 281, 713
HpyF10VI	GCNNNNNNNGC	3 cut(s)	497, 719, 728
HpyF3I	CTNAG	2 cut(s)	11, 264
Hsp92I	GRCGYC	1 cut(s)	413
Hsp92II	CATG	5 cut(s)	190, 440, 514, 522, 797
HspAI	GCGC	2 cut(s)	413, 506
KasI	GGCGCC	1 cut(s)	412
KpnI	GGTACC	1 cut(s)	307
Ksp22I	TGATCA	1 cut(s)	70
KspAI	GTTAAC	1 cut(s)	37
Kzo9I	GATC	5 cut(s)	70, 98, 154, 576, 760
LmnI	GCTCC	3 cut(s)	5, 18, 273
LpnPI	CCDG	5 cut(s)	285, 337, 486, 688, 715
LweI	GCATC	1 cut(s)	250
MaeI	CTAG	3 cut(s)	272, 609, 804
MaeIII	GTNAC	4 cut(s)	137, 457, 514, 655
MalI	GATC	5 cut(s)	72, 100, 156, 578, 762
MboI	GATC	5 cut(s)	70, 98, 154, 576, 760
MboII	GAAGA	8 cut(s)	164, 356, 383, 436, 643, 686, 749, 791
MflI	RGATCY	2 cut(s)	98, 760
MhlI	GDGCHC	2 cut(s)	10, 598
MluCI	AATT	5 cut(s)	214, 250, 276, 782, 813
Mly113I	GGCGCC	1 cut(s)	413
MlyI	GAGTC	1 cut(s)	454
MnlI	CCTC	9 cut(s)	127, 369, 369, 398, 443, 534, 631, 676, 800
Mph1103I	ATGCAT	1 cut(s)	188
MseI	TTAA	2 cut(s)	36, 785
MspR9I	CCNGG	1 cut(s)	703
Mva1269I	GAATGC	1 cut(s)	188
MvaI	CCWGG	1 cut(s)	703
MwoI	GCNNNNNNNGC	3 cut(s)	497, 719, 728
NarI	GGCGCC	1 cut(s)	413
NcoI	CCATGG	1 cut(s)	510
NdeII	GATC	5 cut(s)	70, 98, 154, 576, 760
NlaIII	CATG	5 cut(s)	190, 440, 514, 522, 797
NlaIV	GGNNCC	2 cut(s)	305, 414
NmuCI	GTSAC	4 cut(s)	137, 457, 514, 655
NsiI	ATGCAT	1 cut(s)	188
PctI	GAATGC	1 cut(s)	188
PfeI	GAWTC	2 cut(s)	56, 427
PkrI	GCNGC	1 cut(s)	417
PleI	GAGTC	1 cut(s)	454
PluTI	GGCGCC	1 cut(s)	416
PpsI	GAGTC	1 cut(s)	454
PsiI	TTATAA	1 cut(s)	401
Psp6I	CCWGG	1 cut(s)	701
PspGI	CCWGG	1 cut(s)	701
PspN4I	GGNNCC	2 cut(s)	305, 414
PspPI	GGNCC	1 cut(s)	113
PsuI	RGATCY	2 cut(s)	98, 760
RsaI	GTAC	2 cut(s)	177, 305
RsaNI	GTAC	2 cut(s)	176, 304
SaqAI	TTAA	2 cut(s)	36, 785
SatI	GCNGC	1 cut(s)	416
Sau3AI	GATC	5 cut(s)	70, 98, 154, 576, 760
Sau96I	GGNCC	1 cut(s)	113
SchI	GAGTC	1 cut(s)	454
ScrFI	CCNGG	1 cut(s)	703
SduI	GDGCHC	2 cut(s)	10, 598
SetI	ASST	7 cut(s)	23, 44, 87, 270, 289, 666, 791
SfaNI	GCATC	1 cut(s)	250
SfoI	GGCGCC	1 cut(s)	414
SmlI	CTYRAG	3 cut(s)	290, 360, 597
SmoI	CTYRAG	3 cut(s)	290, 360, 597
Sse9I	AATT	5 cut(s)	214, 250, 276, 782, 813
SsiI	CCGC	1 cut(s)	416
SspDI	GGCGCC	1 cut(s)	412
SspI	AATATT	1 cut(s)	340
SspMI	CTAG	3 cut(s)	272, 609, 804
StyD4I	CCNGG	1 cut(s)	701
StyI	CCWWGG	1 cut(s)	510
TaqI	TCGA	1 cut(s)	479
TasI	AATT	5 cut(s)	214, 250, 276, 782, 813
TatI	WGTACW	1 cut(s)	175
TauI	GCSGC	1 cut(s)	418
TfiI	GAWTC	2 cut(s)	56, 427
Tru1I	TTAA	2 cut(s)	36, 785
Tru9I	TTAA	2 cut(s)	36, 785
TscAI	CASTG	2 cut(s)	450, 498
TseFI	GTSAC	4 cut(s)	137, 457, 514, 655
Tsp45I	GTSAC	4 cut(s)	137, 457, 514, 655
TspDTI	ATGAA	5 cut(s)	203, 301, 384, 453, 738
TspRI	CASTG	2 cut(s)	450, 498
XapI	RAATTY	1 cut(s)	250
XspI	CTAG	3 cut(s)	272, 609, 804
Zsp2I	ATGCAT	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.