Rmu_sc0019708.1_g000001

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019708.1
OG0000135
Physical Location & Seq
Reverse (-)
742 .. 1715
974 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019708.1_g000001.1.cds

Sequence Viewer

Length: 921 bp
atggagtgtgtgagactctataagccttacaatacggtttcaggtgaaactgatccttttgtgatccccgatttgcctggtgggattgaattgacaagatcccagctgcctgatatggtcaaggacaatgttttaaatgacttgactcagttgctgaaagaggctagggaatcggagttgaagagctatggaaaatgggttggggcatggcatataggcccggtttctctatgcaataaagagacagaggagaaagtacagagaggaaaacgagtgtcaattgatgagcatgagtgtttgaaatggcttgattcaaagaaaccagattcagttgtgtatgtctgttttgggagtgtggccgatttcaattccactcagctcaaagaggttgctgtggctctagaagctgctgggcaggacttcatttgggtagtgaggaaaggcaaagatgaggtggatcaggatgagtggttgcctgaaggatttgaagagaggatggaaagcaagggattgatcatcagaggttgggctcctcaggttttgattctggatcatccaagtgttggtgggtttgtgactcattgtgggtggaactccacattggaaggaatttctgcagggcttcctatggtgacatggcctctggctgctgaacaattttacaatgagaaattggtgacccaattgctgaagattggagttggggttggggctcagaaatggatcaggcgttttggggatagtgtgaagaaggaagctattgtgaaagctgtgagtcagatcatggtgggtgaagaagcagaggtaaggagaagcagagctagggagcttggaaagcaagcaaggagggctgttgaagaaggaggatcatcataccaggattttaataagctaattgaagaattgaaatcccacagttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

306

Amino Acids

34.33

Weight (kDa)

5.48

Isoelectric Point (pI)

39.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000135)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15480 AT2G15480 AT2G15490 AT2G15490 AT2G15490 AT4G34131 AT4G34135 AT4G34135 AT4G34138
fragaria_vesca FvH4_2g05600 FvH4_2g05601 FvH4_2g05602 FvH4_2g05603 FvH4_2g05604 FvH4_2g05630 FvH4_2g05660 FvH4_2g05662 FvH4_2g05663 FvH4_2g05671 FvH4_2g05680 FvH4_3g09760 FvH4_3g09780 FvH4_7g23180
malus_domestica MD00G1046200.v1.1 MD04G1214200.v1.1 MD05G1085700.v1.1 MD05G1085800.v1.1 MD05G1086200.v1.1 MD05G1086300.v1.1 MD05G1091500.v1.1 MD07G1007400.v1.1 MD07G1007500.v1.1 MD07G1007600.v1.1 MD17G1100000.v1.1 MD17G1100300.v1.1
prunus_persica Prupe.8G129800_v2.0.a1 Prupe.8G130100_v2.0.a1 Prupe.8G130200_v2.0.a1 Prupe.8G130300_v2.0.a1 Prupe.8G130400_v2.0.a1 Prupe.8G130500_v2.0.a1 Prupe.8G130600_v2.0.a1 Prupe.8G130700_v2.0.a1 Prupe.8G130800_v2.0.a1 Prupe.8G130900_v2.0.a1 Prupe.8G131000_v2.0.a1 Prupe.8G131000_v2.0.a1
pyrus_communis pycom05g08530 pycom05g08560 pycom07g00600 pycom07g00610 pycom07g00620 pycom17g09520 pycom2675g00060
rosa_chinensis RchiOBHm_Chr2g0111601 RchiOBHm_Chr2g0125751 RchiOBHm_Chr6g0248631 RchiOBHm_Chr6g0248721 RchiOBHm_Chr6g0255881 RchiOBHm_Chr6g0255911 RchiOBHm_Chr6g0255931 RchiOBHm_Chr6g0256041 RchiOBHm_Chr6g0256061 RchiOBHm_Chr6g0256081 RchiOBHm_Chr6g0256121 RchiOBHm_Chr6g0256131 RchiOBHm_Chr6g0256151 RchiOBHm_Chr6g0256161 RchiOBHm_Chr6g0256211 RchiOBHm_Chr6g0256221 RchiOBHm_Chr6g0256241 RchiOBHm_Chr6g0256251 RchiOBHm_Chr6g0256311 RchiOBHm_Chr6g0256331 RchiOBHm_Chr6g0256351 RchiOBHm_Chr6g0256361 RchiOBHm_Chr6g0256371 RchiOBHm_Chr6g0256411 RchiOBHm_Chr6g0256421 RchiOBHm_Chr6g0256431 RchiOBHm_Chr6g0256461 RchiOBHm_Chr6g0256471 RchiOBHm_Chr6g0256501 RchiOBHm_Chr6g0256511 RchiOBHm_Chr6g0256521 RchiOBHm_Chr6g0256531 RchiOBHm_Chr6g0256611 RchiOBHm_Chr6g0257761 RchiOBHm_Chr6g0276931
rosa_laevigata RLG00000014720 RLG00000014721 RLG00000014763 RLG00000014766 RLG00000014768 RLG00000014769 RLG00000014770 RLG00000014774 RLG00000014776 RLG00000014777 RLG00000014778 RLG00000014781 RLG00000014782 RLG00000014783 RLG00000014786 RLG00000014787 RLG00000014788 RLG00000014789 RLG00000014790 RLG00000014791 RLG00000014793 RLG00000014795 RLG00000014799 RLG00000014800 RLG00000014803 RLG00000014805 RLG00000015130 RLG00000015139
rosa_multiflora Rmu_co8160604.1_g000001 Rmu_sc0001598.1_g000016 Rmu_sc0001598.1_g000018 Rmu_sc0001598.1_g000024 Rmu_sc0001738.1_g000012 Rmu_sc0001738.1_g000013 Rmu_sc0001896.1_g000025 Rmu_sc0001896.1_g000029 Rmu_sc0001896.1_g000037 Rmu_sc0001896.1_g000039 Rmu_sc0002393.1_g000006 Rmu_sc0002553.1_g000039 Rmu_sc0004414.1_g000007 Rmu_sc0005080.1_g000001 Rmu_sc0005080.1_g000002 Rmu_sc0005080.1_g000003 Rmu_sc0005080.1_g000006 Rmu_sc0005080.1_g000007 Rmu_sc0005080.1_g000008 Rmu_sc0005080.1_g000010 Rmu_sc0005080.1_g000011 Rmu_sc0005080.1_g000012 Rmu_sc0008707.1_g000001 Rmu_sc0008707.1_g000003 Rmu_sc0008832.1_g000002 Rmu_sc0010826.1_g000012 Rmu_sc0011315.1_g000009 Rmu_sc0019708.1_g000001
rosa_roxburghii Rroxscaffold_2G00108580 Rroxscaffold_7G00208920 Rroxscaffold_7G00209240 Rroxscaffold_7G00209250 Rroxscaffold_7G00209260 Rroxscaffold_7G00209270 Rroxscaffold_7G00209360 Rroxscaffold_7G00209380 Rroxscaffold_7G00209390 Rroxscaffold_7G00209430 Rroxscaffold_7G00209440 Rroxscaffold_7G00209510 Rroxscaffold_7G00209540
rosa_rugosa Rorug05G0532600 Rorug05G0562400 Rorug05G0562500 Rorug05G0563000 Rorug05G0563100 Rorug05G0563300 Rorug05G0563300 Rorug05G0563600 Rorug05G0563700 Rorug05G0563800 Rorug05G0564000 Rorug05G0564100 Rorug05G0564200 Rorug05G0564300 Rorug05G0564400 Rorug05G0564500 Rorug05G0564600 Rorug05G0564600 Rorug05G0568600 Rorug05G0568700
rosa_wichuraiana Rw6G004280 Rw6G004380 Rw6G006940 Rw6G006950 Rw6G006960 Rw6G007000 Rw6G007090 Rw6G007100 Rw6G007110 Rw6G007150 Rw6G007160 Rw6G007170 Rw6G007200 Rw6G007210 Rw6G007240 Rw6G007250 Rw6G007280 Rw6G007290 Rw6G007300 Rw6G007310 Rw6G007320 Rw6G007340 Rw6G007350 Rw6G007360 Rw6G007380 Rw6G007660 Rw6G018660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 563
AclWI GGATC 7 cut(s) 47, 58, 93, 465, 558, 731, 874
AcoI YGGCCR 1 cut(s) 357
AcsI RAATTY 1 cut(s) 609
AcuI CTGAAG 2 cut(s) 498, 710
AfaI GTAC 1 cut(s) 258
AfiI CCNNNNNNNGG 1 cut(s) 563
AgsI TTSAA 9 cut(s) 89, 181, 301, 315, 367, 488, 857, 899, 907
AjnI CCWGG 2 cut(s) 76, 876
AjuI GAANNNNNNNTTGG 2 cut(s) 584, 616
AluBI AGCT 9 cut(s) 106, 186, 379, 407, 758, 770, 821, 829, 892
AluI AGCT 9 cut(s) 106, 186, 379, 407, 758, 770, 821, 829, 892
Alw26I GTCTC 2 cut(s) 7, 236
AlwI GGATC 7 cut(s) 47, 58, 93, 465, 558, 731, 874
AlwNI CAGNNNCTG 1 cut(s) 154
AoxI GGCC 3 cut(s) 217, 357, 638
ApeKI GCWGC 3 cut(s) 106, 407, 647
ApoI RAATTY 1 cut(s) 609
AspS9I GGNCC 1 cut(s) 218
AsuC2I CCSGG 1 cut(s) 221
AsuHPI GGTGA 4 cut(s) 56, 643, 688, 803
AxyI CCTNAGG 1 cut(s) 534
BanII GRGCYC 2 cut(s) 532, 715
BbvI GCAGC 3 cut(s) 93, 394, 634
BccI CCATC 1 cut(s) 490
BciT130I CCWGG 2 cut(s) 78, 878
BclI TGATCA 1 cut(s) 513
BcnI CCSGG 1 cut(s) 221
BcoDI GTCTC 2 cut(s) 7, 236
BfaI CTAG 3 cut(s) 165, 401, 822
BfmI CTRYAG 1 cut(s) 615
BisI GCNGC 3 cut(s) 107, 408, 648
BlsI GCNGC 3 cut(s) 108, 409, 649
Bme1390I CCNGG 3 cut(s) 78, 221, 878
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 1 cut(s) 531
BmrFI CCNGG 3 cut(s) 78, 221, 878
BpuMI CCSGG 1 cut(s) 221
BsaXI ACNNNNNCTCC 2 cut(s) 690, 720
Bsc4I CCNNNNNNNGG 1 cut(s) 563
Bse21I CCTNAGG 1 cut(s) 534
BseBI CCWGG 2 cut(s) 78, 878
BseGI GGATG 3 cut(s) 469, 501, 553
BseLI CCNNNNNNNGG 1 cut(s) 563
BseMII CTCAG 4 cut(s) 161, 389, 548, 728
BseRI GAGGAG 2 cut(s) 263, 522
BseXI GCAGC 3 cut(s) 93, 394, 634
BseYI CCCAGC 2 cut(s) 102, 410
BshFI GGCC 3 cut(s) 219, 359, 640
BsiSI CCGG 1 cut(s) 221
BslI CCNNNNNNNGG 1 cut(s) 563
BsmAI GTCTC 2 cut(s) 7, 236
BsnI GGCC 3 cut(s) 219, 359, 640
Bsp1286I GDGCHC 2 cut(s) 532, 715
Bsp143I GATC 9 cut(s) 52, 63, 98, 457, 513, 550, 723, 780, 866
BspANI GGCC 3 cut(s) 219, 359, 640
BspCNI CTCAG 4 cut(s) 160, 388, 547, 727
BspLI GGNNCC 1 cut(s) 531
BspMAI CTGCAG 1 cut(s) 619
BspPI GGATC 7 cut(s) 47, 58, 93, 465, 558, 731, 874
BspQI GCTCTTC 1 cut(s) 176
BssMI GATC 9 cut(s) 52, 63, 98, 457, 513, 550, 723, 780, 866
Bst2UI CCWGG 2 cut(s) 78, 878
Bst4CI ACNGT 2 cut(s) 37, 917
Bst6I CTCTTC 2 cut(s) 176, 483
BstC8I GCNNGC 1 cut(s) 840
BstDEI CTNAG 4 cut(s) 147, 375, 534, 714
BstEII GGTNACC 1 cut(s) 676
BstF5I GGATG 3 cut(s) 469, 501, 553
BstKTI GATC 9 cut(s) 55, 66, 101, 460, 516, 553, 726, 783, 869
BstMAI GTCTC 2 cut(s) 7, 236
BstMBI GATC 9 cut(s) 52, 63, 98, 457, 513, 550, 723, 780, 866
BstMWI GCNNNNNNNGC 3 cut(s) 404, 835, 848
BstNI CCWGG 2 cut(s) 78, 878
BstPI GGTNACC 1 cut(s) 676
BstSCI CCNGG 3 cut(s) 76, 219, 876
BstSFI CTRYAG 1 cut(s) 615
BstV1I GCAGC 3 cut(s) 93, 394, 634
BstX2I RGATCY 1 cut(s) 98
BstYI RGATCY 1 cut(s) 98
Bsu36I CCTNAGG 1 cut(s) 534
BsuRI GGCC 3 cut(s) 219, 359, 640
BtsCI GGATG 3 cut(s) 469, 501, 553
Cac8I GCNNGC 1 cut(s) 840
CaiI CAGNNNCTG 1 cut(s) 154
Cfr13I GGNCC 1 cut(s) 218
Csp6I GTAC 1 cut(s) 257
CviAII CATG 4 cut(s) 207, 290, 636, 784
CviQI GTAC 1 cut(s) 257
DdeI CTNAG 4 cut(s) 147, 375, 534, 714
DpnI GATC 9 cut(s) 54, 65, 100, 459, 515, 552, 725, 782, 868
DpnII GATC 9 cut(s) 52, 63, 98, 457, 513, 550, 723, 780, 866
DraI TTTAAA 1 cut(s) 135
EaeI YGGCCR 1 cut(s) 357
Eam1104I CTCTTC 2 cut(s) 176, 483
EarI CTCTTC 2 cut(s) 176, 483
Eco24I GRGCYC 2 cut(s) 532, 715
Eco57I CTGAAG 2 cut(s) 498, 710
Eco81I CCTNAGG 1 cut(s) 534
Eco91I GGTNACC 1 cut(s) 676
EcoO65I GGTNACC 1 cut(s) 676
EcoRII CCWGG 2 cut(s) 76, 876
EcoT38I GRGCYC 2 cut(s) 532, 715
FaeI CATG 4 cut(s) 210, 293, 639, 787
FatI CATG 4 cut(s) 206, 289, 635, 783
FbaI TGATCA 1 cut(s) 513
Fnu4HI GCNGC 3 cut(s) 107, 408, 648
FokI GGATG 3 cut(s) 476, 508, 540
FriOI GRGCYC 2 cut(s) 532, 715
Fsp4HI GCNGC 3 cut(s) 107, 408, 648
FspBI CTAG 3 cut(s) 165, 401, 822
GluI GCNGC 3 cut(s) 107, 408, 648
GsaI CCCAGC 2 cut(s) 106, 414
HaeIII GGCC 3 cut(s) 219, 359, 640
HapII CCGG 1 cut(s) 221
Hin1II CATG 4 cut(s) 210, 293, 639, 787
HinfI GANTC 8 cut(s) 15, 145, 170, 311, 326, 544, 577, 775
HpaII CCGG 1 cut(s) 221
HphI GGTGA 4 cut(s) 56, 643, 688, 803
Hpy188I TCNGA 4 cut(s) 175, 521, 717, 780
Hpy188III TCNNGA 3 cut(s) 401, 461, 548
HpyAV CCTTC 4 cut(s) 473, 599, 745, 854
HpyCH4III ACNGT 2 cut(s) 37, 917
HpyCH4V TGCA 2 cut(s) 234, 617
HpyF10VI GCNNNNNNNGC 3 cut(s) 404, 835, 848
HpyF3I CTNAG 4 cut(s) 147, 375, 534, 714
Hsp92II CATG 4 cut(s) 210, 293, 639, 787
Ksp22I TGATCA 1 cut(s) 513
Kzo9I GATC 9 cut(s) 52, 63, 98, 457, 513, 550, 723, 780, 866
LguI GCTCTTC 1 cut(s) 176
LmnI GCTCC 2 cut(s) 535, 826
Lsp1109I GCAGC 3 cut(s) 93, 394, 634
MaeI CTAG 3 cut(s) 165, 401, 822
MaeIII GTNAC 3 cut(s) 574, 631, 676
MalI GATC 9 cut(s) 54, 65, 100, 459, 515, 552, 725, 782, 868
MboI GATC 9 cut(s) 52, 63, 98, 457, 513, 550, 723, 780, 866
MboII GAAGA 7 cut(s) 193, 500, 703, 760, 806, 869, 911
MfeI CAATTG 2 cut(s) 279, 683
MflI RGATCY 1 cut(s) 98
MhlI GDGCHC 2 cut(s) 532, 715
MluCI AATT 9 cut(s) 89, 279, 367, 609, 656, 671, 683, 894, 902
MlyI GAGTC 4 cut(s) 9, 139, 571, 784
MseI TTAA 2 cut(s) 134, 885
MslI CAYNNNNRTG 1 cut(s) 558
MspA1I CMGCKG 1 cut(s) 106
MspI CCGG 1 cut(s) 221
MspR9I CCNGG 3 cut(s) 78, 221, 878
MunI CAATTG 2 cut(s) 279, 683
MvaI CCWGG 2 cut(s) 78, 878
MwoI GCNNNNNNNGC 3 cut(s) 404, 835, 848
NciI CCSGG 1 cut(s) 221
NdeII GATC 9 cut(s) 52, 63, 98, 457, 513, 550, 723, 780, 866
NlaIII CATG 4 cut(s) 210, 293, 639, 787
NlaIV GGNNCC 1 cut(s) 531
NmuCI GTSAC 3 cut(s) 574, 631, 676
PciSI GCTCTTC 1 cut(s) 176
PfeI GAWTC 4 cut(s) 170, 311, 326, 544
PflMI CCANNNNNTGG 1 cut(s) 563
PkrI GCNGC 3 cut(s) 108, 409, 649
PleI GAGTC 4 cut(s) 9, 139, 571, 783
PpsI GAGTC 4 cut(s) 9, 139, 571, 783
Psp6I CCWGG 2 cut(s) 76, 876
PspEI GGTNACC 1 cut(s) 676
PspFI CCCAGC 2 cut(s) 102, 410
PspGI CCWGG 2 cut(s) 76, 876
PspN4I GGNNCC 1 cut(s) 531
PspPI GGNCC 1 cut(s) 218
PstI CTGCAG 1 cut(s) 619
PstNI CAGNNNCTG 1 cut(s) 154
PsuI RGATCY 1 cut(s) 98
PvuII CAGCTG 1 cut(s) 106
RsaI GTAC 1 cut(s) 258
RsaNI GTAC 1 cut(s) 257
RseI CAYNNNNRTG 1 cut(s) 558
SapI GCTCTTC 1 cut(s) 176
SaqAI TTAA 2 cut(s) 134, 885
SatI GCNGC 3 cut(s) 107, 408, 648
Sau3AI GATC 9 cut(s) 52, 63, 98, 457, 513, 550, 723, 780, 866
Sau96I GGNCC 1 cut(s) 218
SchI GAGTC 4 cut(s) 9, 139, 571, 784
ScrFI CCNGG 3 cut(s) 78, 221, 878
SduI GDGCHC 2 cut(s) 532, 715
SfcI CTRYAG 1 cut(s) 615
SmiMI CAYNNNNRTG 1 cut(s) 558
Sse9I AATT 9 cut(s) 89, 279, 367, 609, 656, 671, 683, 894, 902
SspMI CTAG 3 cut(s) 165, 401, 822
StyD4I CCNGG 3 cut(s) 76, 219, 876
TaaI ACNGT 2 cut(s) 37, 917
TasI AATT 9 cut(s) 89, 279, 367, 609, 656, 671, 683, 894, 902
TatI WGTACW 1 cut(s) 256
TfiI GAWTC 4 cut(s) 170, 311, 326, 544
Tru1I TTAA 2 cut(s) 134, 885
Tru9I TTAA 2 cut(s) 134, 885
TseFI GTSAC 3 cut(s) 574, 631, 676
TseI GCWGC 3 cut(s) 106, 407, 647
Tsp45I GTSAC 3 cut(s) 574, 631, 676
TspDTI ATGAA 1 cut(s) 412
Van91I CCANNNNNTGG 1 cut(s) 563
XapI RAATTY 1 cut(s) 609
XbaI TCTAGA 1 cut(s) 400
XspI CTAG 3 cut(s) 165, 401, 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.