RLG00000014776

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000135
Physical Location & Seq
Forward (+)
57416529 .. 57417446
918 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014776

Sequence Viewer

Length: 918 bp
ATGAAGATGACACGAAGCCAAATACCAGCTTATTTAAAGCTGAATATTGAAAATGAATTCACCAAGTTGTTTAAATTATCCAAGGATGCTGAGGAAAGGAGCTATGGGGTTATTGTTAACAGCTTCTATGAACTTGAACCAGAATATGCAGATCACTATAGGAAGATGTTTGGGAGGAAGACATGGCATATAGGCCCGGTGTCACTGTACAACAAGGCAGCCGAAGATAAAGTAGAGAGTGGATGCGTGGAAAGTTCCATTGAGGAAGTGCACCAGTGCTTATATTGGCTTAATTCTAAGAAACCCAAGACAGTTGTTTATGCATGTTTTGGAAGCCTGACCAATTTTAGTGATTCTCAGCTTCTGGAAATTGCAGTGGGGCTAGAGGCTTGCGGGCAAGAGTTCATTTGGGTTGTGAAGAAAGAAGAGAAAGATAAAGAAGAGTGGTTGCCTGAAGGGTTTGAGCAGAGAATGGAAGGTAAAGGACTCATTATAAGAGGCTGGGCTCCCCAAGTGCTGATTCTTGAGCATGAAGCAGTCGGAGGCTATGTGACTCATTGTGGGTGGAACTCAATCCTTGAAGGAGTGTCTATTGGTGTGCCAATGATCACATGGCCAGTCTCGGCTGAGCAGATTTATAATGAAAATTTGGTGACTGAGATACTTAGAACTGGTGTTGCTGTTGGTGCTCATCAATGGGGTACAGTTGCAGATGAAAGTGTGAAGATGGAGGCTAGTGTAAAGAGGGAGGCAATAGAAGAGGCTGTGAGTCAAATGATGGTGGGGGATGAAGCATTGGCAATGAGAAGCAGAGCTAAAGAGCTAGGAAAGATGGCAAGGAGGGCAGTTGAACAAGGCGGTTCATCGTTCAAGGATTTAAGTGCTCTAATTTCTGAGTTGAGGTCCCTTTCGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

306

Amino Acids

34.3

Weight (kDa)

5.3

Isoelectric Point (pI)

54.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 97 - 219 2.6e-19 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000135)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15480 AT2G15480 AT2G15490 AT2G15490 AT2G15490 AT4G34131 AT4G34135 AT4G34135 AT4G34138
fragaria_vesca FvH4_2g05600 FvH4_2g05601 FvH4_2g05602 FvH4_2g05603 FvH4_2g05604 FvH4_2g05630 FvH4_2g05660 FvH4_2g05662 FvH4_2g05663 FvH4_2g05671 FvH4_2g05680 FvH4_3g09760 FvH4_3g09780 FvH4_7g23180
malus_domestica MD00G1046200.v1.1 MD04G1214200.v1.1 MD05G1085700.v1.1 MD05G1085800.v1.1 MD05G1086200.v1.1 MD05G1086300.v1.1 MD05G1091500.v1.1 MD07G1007400.v1.1 MD07G1007500.v1.1 MD07G1007600.v1.1 MD17G1100000.v1.1 MD17G1100300.v1.1
prunus_persica Prupe.8G129800_v2.0.a1 Prupe.8G130100_v2.0.a1 Prupe.8G130200_v2.0.a1 Prupe.8G130300_v2.0.a1 Prupe.8G130400_v2.0.a1 Prupe.8G130500_v2.0.a1 Prupe.8G130600_v2.0.a1 Prupe.8G130700_v2.0.a1 Prupe.8G130800_v2.0.a1 Prupe.8G130900_v2.0.a1 Prupe.8G131000_v2.0.a1 Prupe.8G131000_v2.0.a1
pyrus_communis pycom05g08530 pycom05g08560 pycom07g00600 pycom07g00610 pycom07g00620 pycom17g09520 pycom2675g00060
rosa_chinensis RchiOBHm_Chr2g0111601 RchiOBHm_Chr2g0125751 RchiOBHm_Chr6g0248631 RchiOBHm_Chr6g0248721 RchiOBHm_Chr6g0255881 RchiOBHm_Chr6g0255911 RchiOBHm_Chr6g0255931 RchiOBHm_Chr6g0256041 RchiOBHm_Chr6g0256061 RchiOBHm_Chr6g0256081 RchiOBHm_Chr6g0256121 RchiOBHm_Chr6g0256131 RchiOBHm_Chr6g0256151 RchiOBHm_Chr6g0256161 RchiOBHm_Chr6g0256211 RchiOBHm_Chr6g0256221 RchiOBHm_Chr6g0256241 RchiOBHm_Chr6g0256251 RchiOBHm_Chr6g0256311 RchiOBHm_Chr6g0256331 RchiOBHm_Chr6g0256351 RchiOBHm_Chr6g0256361 RchiOBHm_Chr6g0256371 RchiOBHm_Chr6g0256411 RchiOBHm_Chr6g0256421 RchiOBHm_Chr6g0256431 RchiOBHm_Chr6g0256461 RchiOBHm_Chr6g0256471 RchiOBHm_Chr6g0256501 RchiOBHm_Chr6g0256511 RchiOBHm_Chr6g0256521 RchiOBHm_Chr6g0256531 RchiOBHm_Chr6g0256611 RchiOBHm_Chr6g0257761 RchiOBHm_Chr6g0276931
rosa_laevigata RLG00000014720 RLG00000014721 RLG00000014763 RLG00000014766 RLG00000014768 RLG00000014769 RLG00000014770 RLG00000014774 RLG00000014776 RLG00000014777 RLG00000014778 RLG00000014781 RLG00000014782 RLG00000014783 RLG00000014786 RLG00000014787 RLG00000014788 RLG00000014789 RLG00000014790 RLG00000014791 RLG00000014793 RLG00000014795 RLG00000014799 RLG00000014800 RLG00000014803 RLG00000014805 RLG00000015130 RLG00000015139
rosa_multiflora Rmu_co8160604.1_g000001 Rmu_sc0001598.1_g000016 Rmu_sc0001598.1_g000018 Rmu_sc0001598.1_g000024 Rmu_sc0001738.1_g000012 Rmu_sc0001738.1_g000013 Rmu_sc0001896.1_g000025 Rmu_sc0001896.1_g000029 Rmu_sc0001896.1_g000037 Rmu_sc0001896.1_g000039 Rmu_sc0002393.1_g000006 Rmu_sc0002553.1_g000039 Rmu_sc0004414.1_g000007 Rmu_sc0005080.1_g000001 Rmu_sc0005080.1_g000002 Rmu_sc0005080.1_g000003 Rmu_sc0005080.1_g000006 Rmu_sc0005080.1_g000007 Rmu_sc0005080.1_g000008 Rmu_sc0005080.1_g000010 Rmu_sc0005080.1_g000011 Rmu_sc0005080.1_g000012 Rmu_sc0008707.1_g000001 Rmu_sc0008707.1_g000003 Rmu_sc0008832.1_g000002 Rmu_sc0010826.1_g000012 Rmu_sc0011315.1_g000009 Rmu_sc0019708.1_g000001
rosa_roxburghii Rroxscaffold_2G00108580 Rroxscaffold_7G00208920 Rroxscaffold_7G00209240 Rroxscaffold_7G00209250 Rroxscaffold_7G00209260 Rroxscaffold_7G00209270 Rroxscaffold_7G00209360 Rroxscaffold_7G00209380 Rroxscaffold_7G00209390 Rroxscaffold_7G00209430 Rroxscaffold_7G00209440 Rroxscaffold_7G00209510 Rroxscaffold_7G00209540
rosa_rugosa Rorug05G0532600 Rorug05G0562400 Rorug05G0562500 Rorug05G0563000 Rorug05G0563100 Rorug05G0563300 Rorug05G0563300 Rorug05G0563600 Rorug05G0563700 Rorug05G0563800 Rorug05G0564000 Rorug05G0564100 Rorug05G0564200 Rorug05G0564300 Rorug05G0564400 Rorug05G0564500 Rorug05G0564600 Rorug05G0564600 Rorug05G0568600 Rorug05G0568700
rosa_wichuraiana Rw6G004280 Rw6G004380 Rw6G006940 Rw6G006950 Rw6G006960 Rw6G007000 Rw6G007090 Rw6G007100 Rw6G007110 Rw6G007150 Rw6G007160 Rw6G007170 Rw6G007200 Rw6G007210 Rw6G007240 Rw6G007250 Rw6G007280 Rw6G007290 Rw6G007300 Rw6G007310 Rw6G007320 Rw6G007340 Rw6G007350 Rw6G007360 Rw6G007380 Rw6G007660 Rw6G018660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 494, 639
AciI CCGC 2 cut(s) 393, 858
AcoI YGGCCR 1 cut(s) 614
AcsI RAATTY 2 cut(s) 56, 646
AcuI CTGAAG 1 cut(s) 474
AfaI GTAC 2 cut(s) 209, 703
AgsI TTSAA 5 cut(s) 50, 137, 581, 851, 871
AjuI GAANNNNNNNTTGG 2 cut(s) 504, 536
AluBI AGCT 7 cut(s) 29, 40, 102, 123, 361, 815, 823
AluI AGCT 7 cut(s) 29, 40, 102, 123, 361, 815, 823
Alw21I GWGCWC 3 cut(s) 273, 691, 886
Alw26I GTCTC 1 cut(s) 625
Alw44I GTGCAC 1 cut(s) 269
AlwNI CAGNNNCTG 1 cut(s) 364
AoxI GGCC 2 cut(s) 193, 614
ApaLI GTGCAC 1 cut(s) 269
ApeKI GCWGC 1 cut(s) 218
ApoI RAATTY 2 cut(s) 56, 646
AspS9I GGNCC 2 cut(s) 194, 903
AsuC2I CCSGG 1 cut(s) 197
AsuHPI GGTGA 2 cut(s) 52, 664
AvaII GGWCC 1 cut(s) 903
BaeGI GKGCMC 1 cut(s) 273
BalI TGGCCA 1 cut(s) 616
BanII GRGCYC 1 cut(s) 508
BbsI GAAGAC 1 cut(s) 185
Bbv12I GWGCWC 3 cut(s) 273, 691, 886
BbvCI CCTCAGC 1 cut(s) 90
BbvI GCAGC 1 cut(s) 230
BccI CCATC 3 cut(s) 721, 772, 826
BclI TGATCA 1 cut(s) 606
BcnI CCSGG 1 cut(s) 197
BcoDI GTCTC 1 cut(s) 625
BfaI CTAG 3 cut(s) 383, 735, 824
BfmI CTRYAG 1 cut(s) 157
BisI GCNGC 1 cut(s) 219
BlpI GCTNAGC 1 cut(s) 627
BlsI GCNGC 1 cut(s) 220
Bme1390I CCNGG 1 cut(s) 197
Bme18I GGWCC 1 cut(s) 903
BmgT120I GGNCC 2 cut(s) 194, 903
BmiI GGNNCC 2 cut(s) 507, 905
BmrFI CCNGG 1 cut(s) 197
BmsI GCATC 2 cut(s) 76, 233
BpiI GAAGAC 1 cut(s) 185
Bpu10I CCTNAGC 1 cut(s) 90
Bpu1102I GCTNAGC 1 cut(s) 627
BpuEI CTTGAG 1 cut(s) 545
BpuMI CCSGG 1 cut(s) 197
BsaJI CCNNGG 1 cut(s) 81
BsaXI ACNNNNNCTCC 2 cut(s) 534, 564
Bse1I ACTGG 3 cut(s) 274, 617, 676
Bse3DI GCAATG 1 cut(s) 807
BseDI CCNNGG 1 cut(s) 81
BseGI GGATG 3 cut(s) 91, 248, 793
BseMI GCAATG 1 cut(s) 807
BseMII CTCAG 5 cut(s) 81, 371, 618, 648, 885
BseNI ACTGG 3 cut(s) 274, 617, 676
BseSI GKGCMC 1 cut(s) 273
BseXI GCAGC 1 cut(s) 230
BseYI CCCAGC 1 cut(s) 501
BshFI GGCC 2 cut(s) 195, 616
BsiHKAI GWGCWC 3 cut(s) 273, 691, 886
BsiSI CCGG 1 cut(s) 197
BslFI GGGAC 1 cut(s) 889
BsmAI GTCTC 1 cut(s) 625
BsmFI GGGAC 1 cut(s) 889
BsnI GGCC 2 cut(s) 195, 616
Bsp1286I GDGCHC 4 cut(s) 273, 508, 691, 886
Bsp1407I TGTACA 1 cut(s) 207
Bsp143I GATC 2 cut(s) 151, 606
Bsp1720I GCTNAGC 1 cut(s) 627
BspACI CCGC 2 cut(s) 393, 858
BspANI GGCC 2 cut(s) 195, 616
BspCNI CTCAG 5 cut(s) 82, 370, 619, 649, 886
BspLI GGNNCC 2 cut(s) 507, 905
BsrDI GCAATG 1 cut(s) 807
BsrGI TGTACA 1 cut(s) 207
BsrI ACTGG 3 cut(s) 274, 617, 676
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 2 cut(s) 151, 606
BssT1I CCWWGG 1 cut(s) 81
Bst4CI ACNGT 3 cut(s) 207, 313, 706
Bst6I CTCTTC 3 cut(s) 420, 435, 753
BstAUI TGTACA 1 cut(s) 207
BstC8I GCNNGC 2 cut(s) 391, 395
BstDEI CTNAG 7 cut(s) 90, 297, 357, 627, 657, 665, 894
BstF5I GGATG 3 cut(s) 91, 248, 793
BstKTI GATC 2 cut(s) 154, 609
BstMAI GTCTC 1 cut(s) 625
BstMBI GATC 2 cut(s) 151, 606
BstMWI GCNNNNNNNGC 2 cut(s) 686, 842
BstNSI RCATGY 1 cut(s) 327
BstSCI CCNGG 1 cut(s) 195
BstSFI CTRYAG 1 cut(s) 157
BstSLI GKGCMC 1 cut(s) 273
BstV1I GCAGC 1 cut(s) 230
BstV2I GAAGAC 1 cut(s) 185
BsuRI GGCC 2 cut(s) 195, 616
BtsCI GGATG 3 cut(s) 91, 248, 793
BtsI GCAGTG 1 cut(s) 381
BtsIMutI CAGTG 3 cut(s) 203, 281, 381
Cac8I GCNNGC 2 cut(s) 391, 395
CaiI CAGNNNCTG 1 cut(s) 364
Cfr13I GGNCC 2 cut(s) 194, 903
Csp6I GTAC 2 cut(s) 208, 702
CviAII CATG 4 cut(s) 183, 324, 530, 612
CviQI GTAC 2 cut(s) 208, 702
DdeI CTNAG 7 cut(s) 90, 297, 357, 627, 657, 665, 894
DpnI GATC 2 cut(s) 153, 608
DpnII GATC 2 cut(s) 151, 606
DraI TTTAAA 2 cut(s) 36, 73
EaeI YGGCCR 1 cut(s) 614
Eam1104I CTCTTC 3 cut(s) 420, 435, 753
EarI CTCTTC 3 cut(s) 420, 435, 753
Eco130I CCWWGG 1 cut(s) 81
Eco24I GRGCYC 1 cut(s) 508
Eco47I GGWCC 1 cut(s) 903
Eco57I CTGAAG 1 cut(s) 474
EcoO109I RGGNCCY 1 cut(s) 903
EcoRI GAATTC 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 81
EcoT22I ATGCAT 1 cut(s) 325
EcoT38I GRGCYC 1 cut(s) 508
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 4 cut(s) 186, 327, 533, 615
FaqI GGGAC 1 cut(s) 889
FatI CATG 4 cut(s) 182, 323, 529, 611
FauI CCCGC 1 cut(s) 386
FbaI TGATCA 1 cut(s) 606
Fnu4HI GCNGC 1 cut(s) 219
FokI GGATG 3 cut(s) 98, 255, 800
FriOI GRGCYC 1 cut(s) 508
Fsp4HI GCNGC 1 cut(s) 219
FspBI CTAG 3 cut(s) 383, 735, 824
GluI GCNGC 1 cut(s) 219
GsaI CCCAGC 1 cut(s) 505
HaeIII GGCC 2 cut(s) 195, 616
HapII CCGG 1 cut(s) 197
Hin1II CATG 4 cut(s) 186, 327, 533, 615
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HinfI GANTC 5 cut(s) 353, 486, 520, 553, 769
HpaI GTTAAC 1 cut(s) 118
HpaII CCGG 1 cut(s) 197
HphI GGTGA 2 cut(s) 52, 664
Hpy166II GTNNAC 2 cut(s) 118, 271
Hpy188I TCNGA 2 cut(s) 542, 895
Hpy188III TCNNGA 3 cut(s) 365, 524, 915
Hpy8I GTNNAC 2 cut(s) 118, 271
HpyAV CCTTC 3 cut(s) 449, 470, 575
HpyCH4III ACNGT 3 cut(s) 207, 313, 706
HpyCH4V TGCA 5 cut(s) 149, 271, 323, 374, 710
HpyF10VI GCNNNNNNNGC 2 cut(s) 686, 842
HpyF3I CTNAG 7 cut(s) 90, 297, 357, 627, 657, 665, 894
Hsp92II CATG 4 cut(s) 186, 327, 533, 615
Ksp22I TGATCA 1 cut(s) 606
KspAI GTTAAC 1 cut(s) 118
Kzo9I GATC 2 cut(s) 151, 606
LmnI GCTCC 2 cut(s) 99, 511
Lsp1109I GCAGC 1 cut(s) 230
LweI GCATC 2 cut(s) 76, 233
MaeI CTAG 3 cut(s) 383, 735, 824
MaeIII GTNAC 3 cut(s) 201, 550, 652
MalI GATC 2 cut(s) 153, 608
MboI GATC 2 cut(s) 151, 606
MboII GAAGA 9 cut(s) 16, 175, 190, 236, 430, 437, 452, 736, 770
MhlI GDGCHC 4 cut(s) 273, 508, 691, 886
MlsI TGGCCA 1 cut(s) 616
MluCI AATT 7 cut(s) 56, 74, 292, 343, 369, 646, 888
MluNI TGGCCA 1 cut(s) 616
MlyI GAGTC 3 cut(s) 480, 547, 778
MmeI TCCRAC 1 cut(s) 520
Mox20I TGGCCA 1 cut(s) 616
Mph1103I ATGCAT 1 cut(s) 325
MscI TGGCCA 1 cut(s) 616
MseI TTAA 5 cut(s) 35, 72, 117, 291, 878
Msp20I TGGCCA 1 cut(s) 616
MspI CCGG 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 197
MwoI GCNNNNNNNGC 2 cut(s) 686, 842
NciI CCSGG 1 cut(s) 197
NdeII GATC 2 cut(s) 151, 606
NlaIII CATG 4 cut(s) 186, 327, 533, 615
NlaIV GGNNCC 2 cut(s) 507, 905
NmeAIII GCCGAG 1 cut(s) 602
NmuCI GTSAC 3 cut(s) 201, 550, 652
NsiI ATGCAT 1 cut(s) 325
NspI RCATGY 1 cut(s) 327
PfeI GAWTC 2 cut(s) 353, 520
PkrI GCNGC 1 cut(s) 220
PleI GAGTC 3 cut(s) 480, 547, 777
PpsI GAGTC 3 cut(s) 480, 547, 777
PpuMI RGGWCCY 1 cut(s) 903
PsiI TTATAA 2 cut(s) 494, 639
Psp5II RGGWCCY 1 cut(s) 903
PspFI CCCAGC 1 cut(s) 501
PspN4I GGNNCC 2 cut(s) 507, 905
PspPI GGNCC 2 cut(s) 194, 903
PspPPI RGGWCCY 1 cut(s) 903
PstNI CAGNNNCTG 1 cut(s) 364
RsaI GTAC 2 cut(s) 209, 703
RsaNI GTAC 2 cut(s) 208, 702
SaqAI TTAA 5 cut(s) 35, 72, 117, 291, 878
SatI GCNGC 1 cut(s) 219
Sau3AI GATC 2 cut(s) 151, 606
Sau96I GGNCC 2 cut(s) 194, 903
SchI GAGTC 3 cut(s) 480, 547, 778
ScrFI CCNGG 1 cut(s) 197
SduI GDGCHC 4 cut(s) 273, 508, 691, 886
SetI ASST 9 cut(s) 31, 42, 104, 125, 363, 481, 817, 825, 905
SfaNI GCATC 2 cut(s) 76, 233
SfcI CTRYAG 1 cut(s) 157
SinI GGWCC 1 cut(s) 903
SmlI CTYRAG 1 cut(s) 524
SmoI CTYRAG 1 cut(s) 524
Sse9I AATT 7 cut(s) 56, 74, 292, 343, 369, 646, 888
SsiI CCGC 2 cut(s) 393, 858
SspI AATATT 1 cut(s) 46
SspMI CTAG 3 cut(s) 383, 735, 824
StyD4I CCNGG 1 cut(s) 195
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 3 cut(s) 207, 313, 706
TasI AATT 7 cut(s) 56, 74, 292, 343, 369, 646, 888
TatI WGTACW 1 cut(s) 207
TfiI GAWTC 2 cut(s) 353, 520
Tru1I TTAA 5 cut(s) 35, 72, 117, 291, 878
Tru9I TTAA 5 cut(s) 35, 72, 117, 291, 878
TscAI CASTG 3 cut(s) 210, 281, 381
TseFI GTSAC 3 cut(s) 201, 550, 652
TseI GCWGC 1 cut(s) 218
Tsp45I GTSAC 3 cut(s) 201, 550, 652
TspDTI ATGAA 9 cut(s) 17, 69, 144, 394, 546, 657, 729, 804, 852
TspRI CASTG 3 cut(s) 210, 281, 381
VneI GTGCAC 1 cut(s) 269
VpaK11BI GGWCC 1 cut(s) 903
XapI RAATTY 2 cut(s) 56, 646
XceI RCATGY 1 cut(s) 327
XcmI CCANNNNNNNNNTGG 1 cut(s) 609
XspI CTAG 3 cut(s) 383, 735, 824
Zsp2I ATGCAT 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.