Rmu_sc0001598.1_g000018

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001598.1
OG0000135
Physical Location & Seq
Forward (+)
77602 .. 79060
1459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001598.1_g000018.1.cds

Sequence Viewer

Length: 1074 bp
atggaaactaaatcctgcaagcagcttgacatcttttctttccatacatggcctcaaggccacaacataccccttgcaaatatagccaaactattttcctctcacggtgtcaaatccaccataataaccactccactcaatgcaccattcttttccaaagcgactcaaagaaccaaaagtttggagtttgaccatgaaattgaacttgttctcatcaagtttgcatttgccaaagttggtttgccacaagaatgtgagaaggctgagttagttacaacaccagagatggaagcaaagttcttcattgccaccagtttgctggaaccacagctcgagcaaattttagatgaacatcgtccacattgccttgttgctgatgctttctttccttttgctaccgatgttgctgctaagtttggaattccaaggctatattttcatggaactgatcattacaggaaggtgtttgggaggaaggcatggcatattggcccggttttattatgcaacaaggcaacagataaagcagagaagggaccagaggcctctgttgatgaacactacatggtcaatttcactaattgtcaggtcctagaaattgcagttggtcttgaagcttctggacaagacttcatttgggttgtcaagaaagaaaagaaagaaatagaagcctggttgcctgaaggatttgagaagagaatggaaggtaagggacttattatcagagagtgggcgccgcaaccgcagattcttgagcatgaagcaaccggaggatttgtgactcattgtaggtggaactctacccttgaaggggtagatgcgtcatcttgggttgctgttggtgctgaaaaatgggtttcatttgtggacgaaagtgtgaagagtgaagccagcgtgaagggggaggccatagagaattctgtgacaagaatcatgatgggtggtgaagcagaggaaatgagaagcagagttaaagagcttggagagatagcaagcaaggctgttgaagaaggtggtacatctttctcgggtgtaactgtgctaattggagagctgaagacccttgtctcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

357

Amino Acids

39.77

Weight (kDa)

5.55

Isoelectric Point (pI)

37.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000135)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15480 AT2G15480 AT2G15490 AT2G15490 AT2G15490 AT4G34131 AT4G34135 AT4G34135 AT4G34138
fragaria_vesca FvH4_2g05600 FvH4_2g05601 FvH4_2g05602 FvH4_2g05603 FvH4_2g05604 FvH4_2g05630 FvH4_2g05660 FvH4_2g05662 FvH4_2g05663 FvH4_2g05671 FvH4_2g05680 FvH4_3g09760 FvH4_3g09780 FvH4_7g23180
malus_domestica MD00G1046200.v1.1 MD04G1214200.v1.1 MD05G1085700.v1.1 MD05G1085800.v1.1 MD05G1086200.v1.1 MD05G1086300.v1.1 MD05G1091500.v1.1 MD07G1007400.v1.1 MD07G1007500.v1.1 MD07G1007600.v1.1 MD17G1100000.v1.1 MD17G1100300.v1.1
prunus_persica Prupe.8G129800_v2.0.a1 Prupe.8G130100_v2.0.a1 Prupe.8G130200_v2.0.a1 Prupe.8G130300_v2.0.a1 Prupe.8G130400_v2.0.a1 Prupe.8G130500_v2.0.a1 Prupe.8G130600_v2.0.a1 Prupe.8G130700_v2.0.a1 Prupe.8G130800_v2.0.a1 Prupe.8G130900_v2.0.a1 Prupe.8G131000_v2.0.a1 Prupe.8G131000_v2.0.a1
pyrus_communis pycom05g08530 pycom05g08560 pycom07g00600 pycom07g00610 pycom07g00620 pycom17g09520 pycom2675g00060
rosa_chinensis RchiOBHm_Chr2g0111601 RchiOBHm_Chr2g0125751 RchiOBHm_Chr6g0248631 RchiOBHm_Chr6g0248721 RchiOBHm_Chr6g0255881 RchiOBHm_Chr6g0255911 RchiOBHm_Chr6g0255931 RchiOBHm_Chr6g0256041 RchiOBHm_Chr6g0256061 RchiOBHm_Chr6g0256081 RchiOBHm_Chr6g0256121 RchiOBHm_Chr6g0256131 RchiOBHm_Chr6g0256151 RchiOBHm_Chr6g0256161 RchiOBHm_Chr6g0256211 RchiOBHm_Chr6g0256221 RchiOBHm_Chr6g0256241 RchiOBHm_Chr6g0256251 RchiOBHm_Chr6g0256311 RchiOBHm_Chr6g0256331 RchiOBHm_Chr6g0256351 RchiOBHm_Chr6g0256361 RchiOBHm_Chr6g0256371 RchiOBHm_Chr6g0256411 RchiOBHm_Chr6g0256421 RchiOBHm_Chr6g0256431 RchiOBHm_Chr6g0256461 RchiOBHm_Chr6g0256471 RchiOBHm_Chr6g0256501 RchiOBHm_Chr6g0256511 RchiOBHm_Chr6g0256521 RchiOBHm_Chr6g0256531 RchiOBHm_Chr6g0256611 RchiOBHm_Chr6g0257761 RchiOBHm_Chr6g0276931
rosa_laevigata RLG00000014720 RLG00000014721 RLG00000014763 RLG00000014766 RLG00000014768 RLG00000014769 RLG00000014770 RLG00000014774 RLG00000014776 RLG00000014777 RLG00000014778 RLG00000014781 RLG00000014782 RLG00000014783 RLG00000014786 RLG00000014787 RLG00000014788 RLG00000014789 RLG00000014790 RLG00000014791 RLG00000014793 RLG00000014795 RLG00000014799 RLG00000014800 RLG00000014803 RLG00000014805 RLG00000015130 RLG00000015139
rosa_multiflora Rmu_co8160604.1_g000001 Rmu_sc0001598.1_g000016 Rmu_sc0001598.1_g000018 Rmu_sc0001598.1_g000024 Rmu_sc0001738.1_g000012 Rmu_sc0001738.1_g000013 Rmu_sc0001896.1_g000025 Rmu_sc0001896.1_g000029 Rmu_sc0001896.1_g000037 Rmu_sc0001896.1_g000039 Rmu_sc0002393.1_g000006 Rmu_sc0002553.1_g000039 Rmu_sc0004414.1_g000007 Rmu_sc0005080.1_g000001 Rmu_sc0005080.1_g000002 Rmu_sc0005080.1_g000003 Rmu_sc0005080.1_g000006 Rmu_sc0005080.1_g000007 Rmu_sc0005080.1_g000008 Rmu_sc0005080.1_g000010 Rmu_sc0005080.1_g000011 Rmu_sc0005080.1_g000012 Rmu_sc0008707.1_g000001 Rmu_sc0008707.1_g000003 Rmu_sc0008832.1_g000002 Rmu_sc0010826.1_g000012 Rmu_sc0011315.1_g000009 Rmu_sc0019708.1_g000001
rosa_roxburghii Rroxscaffold_2G00108580 Rroxscaffold_7G00208920 Rroxscaffold_7G00209240 Rroxscaffold_7G00209250 Rroxscaffold_7G00209260 Rroxscaffold_7G00209270 Rroxscaffold_7G00209360 Rroxscaffold_7G00209380 Rroxscaffold_7G00209390 Rroxscaffold_7G00209430 Rroxscaffold_7G00209440 Rroxscaffold_7G00209510 Rroxscaffold_7G00209540
rosa_rugosa Rorug05G0532600 Rorug05G0562400 Rorug05G0562500 Rorug05G0563000 Rorug05G0563100 Rorug05G0563300 Rorug05G0563300 Rorug05G0563600 Rorug05G0563700 Rorug05G0563800 Rorug05G0564000 Rorug05G0564100 Rorug05G0564200 Rorug05G0564300 Rorug05G0564400 Rorug05G0564500 Rorug05G0564600 Rorug05G0564600 Rorug05G0568600 Rorug05G0568700
rosa_wichuraiana Rw6G004280 Rw6G004380 Rw6G006940 Rw6G006950 Rw6G006960 Rw6G007000 Rw6G007090 Rw6G007100 Rw6G007110 Rw6G007150 Rw6G007160 Rw6G007170 Rw6G007200 Rw6G007210 Rw6G007240 Rw6G007250 Rw6G007280 Rw6G007290 Rw6G007300 Rw6G007310 Rw6G007320 Rw6G007340 Rw6G007350 Rw6G007360 Rw6G007380 Rw6G007660 Rw6G018660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 733
AciI CCGC 2 cut(s) 737, 743
AcsI RAATTY 3 cut(s) 339, 420, 916
AcuI CTGAAG 1 cut(s) 702
AcyI GRCGYC 1 cut(s) 734
AfaI GTAC 1 cut(s) 1018
AfiI CCNNNNNNNGG 2 cut(s) 810, 811
AgsI TTSAA 4 cut(s) 203, 614, 809, 1007
AjnI CCWGG 1 cut(s) 671
AjuI GAANNNNNNNTTGG 2 cut(s) 588, 620
AloI GAACNNNNNNTCC 2 cut(s) 281, 313
AluBI AGCT 5 cut(s) 25, 331, 617, 979, 1054
AluI AGCT 5 cut(s) 25, 331, 617, 979, 1054
Ama87I CYCGRG 2 cut(s) 332, 1027
AoxI GGCC 5 cut(s) 50, 58, 490, 543, 906
ApeKI GCWGC 2 cut(s) 22, 407
ApoI RAATTY 3 cut(s) 339, 420, 916
Asp700I GAANNNNTTC 1 cut(s) 207
AspLEI GCGC 1 cut(s) 736
AspS9I GGNCC 3 cut(s) 491, 536, 589
AsuC2I CCSGG 1 cut(s) 494
AsuHPI GGTGA 1 cut(s) 956
AvaI CYCGRG 2 cut(s) 332, 1027
AvaII GGWCC 2 cut(s) 536, 589
BanI GGYRCC 1 cut(s) 733
BbsI GAAGAC 1 cut(s) 1064
BbvI GCAGC 2 cut(s) 34, 394
BccI CCATC 2 cut(s) 280, 931
BcgI CGANNNNNNTGC 2 cut(s) 389, 423
BciT130I CCWGG 1 cut(s) 673
BclI TGATCA 1 cut(s) 448
BcnI CCSGG 1 cut(s) 494
BfaI CTAG 1 cut(s) 593
BfoI RGCGCY 1 cut(s) 737
BisI GCNGC 3 cut(s) 23, 408, 737
BlsI GCNGC 3 cut(s) 24, 409, 738
Bme1390I CCNGG 2 cut(s) 494, 673
Bme18I GGWCC 2 cut(s) 536, 589
BmeT110I CYCGRG 2 cut(s) 332, 1027
BmgT120I GGNCC 3 cut(s) 491, 536, 589
BmiI GGNNCC 3 cut(s) 324, 537, 735
BmrFI CCNGG 2 cut(s) 494, 673
BmsI GCATC 2 cut(s) 367, 808
BoxI GACNNNNGTC 1 cut(s) 1064
BpiI GAAGAC 1 cut(s) 1064
BpuEI CTTGAG 2 cut(s) 39, 773
BpuMI CCSGG 1 cut(s) 494
BsaBI GATNNNNATC 1 cut(s) 351
BsaHI GRCGYC 1 cut(s) 734
BsaJI CCNNGG 1 cut(s) 425
BsaWI WCCGGW 1 cut(s) 767
BsaXI ACNNNNNCTCC 2 cut(s) 762, 792
Bsc4I CCNNNNNNNGG 2 cut(s) 810, 811
Bse1I ACTGG 1 cut(s) 312
Bse3DI GCAATG 2 cut(s) 303, 361
Bse8I GATNNNNATC 1 cut(s) 351
BseBI CCWGG 1 cut(s) 673
BseDI CCNNGG 1 cut(s) 425
BseJI GATNNNNATC 1 cut(s) 351
BseLI CCNNNNNNNGG 2 cut(s) 810, 811
BseMI GCAATG 2 cut(s) 303, 361
BseMII CTCAG 1 cut(s) 255
BseNI ACTGG 1 cut(s) 312
BseXI GCAGC 2 cut(s) 34, 394
BshFI GGCC 5 cut(s) 52, 60, 492, 545, 908
BshNI GGYRCC 1 cut(s) 733
BsiHKCI CYCGRG 2 cut(s) 332, 1027
BsiSI CCGG 2 cut(s) 494, 768
BslFI GGGAC 2 cut(s) 549, 726
BslI CCNNNNNNNGG 2 cut(s) 810, 811
BsmFI GGGAC 2 cut(s) 549, 726
BsnI GGCC 5 cut(s) 52, 60, 492, 545, 908
BsoBI CYCGRG 2 cut(s) 332, 1027
Bsp143I GATC 1 cut(s) 448
BspACI CCGC 2 cut(s) 737, 743
BspANI GGCC 5 cut(s) 52, 60, 492, 545, 908
BspCNI CTCAG 1 cut(s) 256
BspHI TCATGA 1 cut(s) 933
BspLI GGNNCC 3 cut(s) 324, 537, 735
BspT107I GGYRCC 1 cut(s) 733
BsrDI GCAATG 2 cut(s) 303, 361
BsrI ACTGG 1 cut(s) 312
BssECI CCNNGG 1 cut(s) 425
BssMI GATC 1 cut(s) 448
BssNI GRCGYC 1 cut(s) 734
BssT1I CCWWGG 1 cut(s) 425
Bst2UI CCWGG 1 cut(s) 673
Bst4CI ACNGT 2 cut(s) 107, 1039
Bst6I CTCTTC 2 cut(s) 689, 875
BstACI GRCGYC 1 cut(s) 734
BstC8I GCNNGC 3 cut(s) 20, 892, 994
BstDEI CTNAG 2 cut(s) 264, 411
BstH2I RGCGCY 1 cut(s) 737
BstHHI GCGC 1 cut(s) 736
BstKTI GATC 1 cut(s) 451
BstMBI GATC 1 cut(s) 448
BstMWI GCNNNNNNNGC 4 cut(s) 83, 742, 842, 998
BstNI CCWGG 1 cut(s) 673
BstPAI GACNNNNGTC 1 cut(s) 1064
BstSCI CCNGG 2 cut(s) 492, 671
BstV1I GCAGC 2 cut(s) 34, 394
BstV2I GAAGAC 1 cut(s) 1064
BstXI CCANNNNNNTGG 2 cut(s) 181, 319
BsuRI GGCC 5 cut(s) 52, 60, 492, 545, 908
Cac8I GCNNGC 3 cut(s) 20, 892, 994
CciI TCATGA 1 cut(s) 933
CfoI GCGC 1 cut(s) 736
Cfr13I GGNCC 3 cut(s) 491, 536, 589
CseI GACGC 1 cut(s) 810
Csp6I GTAC 1 cut(s) 1017
CviAII CATG 7 cut(s) 48, 194, 440, 480, 565, 758, 934
CviQI GTAC 1 cut(s) 1017
DdeI CTNAG 2 cut(s) 264, 411
DinI GGCGCC 1 cut(s) 735
DpnI GATC 1 cut(s) 450
DpnII GATC 1 cut(s) 448
Eam1104I CTCTTC 2 cut(s) 689, 875
EarI CTCTTC 2 cut(s) 689, 875
Eco130I CCWWGG 1 cut(s) 425
Eco147I AGGCCT 1 cut(s) 545
Eco47I GGWCC 2 cut(s) 536, 589
Eco57I CTGAAG 1 cut(s) 702
Eco88I CYCGRG 2 cut(s) 332, 1027
EcoO109I RGGNCCY 1 cut(s) 589
EcoRI GAATTC 2 cut(s) 420, 916
EcoRII CCWGG 1 cut(s) 671
EcoT14I CCWWGG 1 cut(s) 425
EgeI GGCGCC 1 cut(s) 735
EheI GGCGCC 1 cut(s) 735
ErhI CCWWGG 1 cut(s) 425
FaeI CATG 7 cut(s) 51, 197, 443, 483, 568, 761, 937
FaqI GGGAC 2 cut(s) 549, 726
FatI CATG 7 cut(s) 47, 193, 439, 479, 564, 757, 933
FbaI TGATCA 1 cut(s) 448
Fnu4HI GCNGC 3 cut(s) 23, 408, 737
Fsp4HI GCNGC 3 cut(s) 23, 408, 737
FspBI CTAG 1 cut(s) 593
GlaI GCGC 1 cut(s) 735
GluI GCNGC 3 cut(s) 23, 408, 737
HaeII RGCGCY 1 cut(s) 737
HaeIII GGCC 5 cut(s) 52, 60, 492, 545, 908
HapII CCGG 2 cut(s) 494, 768
HgaI GACGC 1 cut(s) 810
HhaI GCGC 1 cut(s) 736
Hin1I GRCGYC 1 cut(s) 734
Hin1II CATG 7 cut(s) 51, 197, 443, 483, 568, 761, 937
Hin6I GCGC 1 cut(s) 734
HinP1I GCGC 1 cut(s) 734
HindIII AAGCTT 1 cut(s) 615
HinfI GANTC 4 cut(s) 163, 748, 781, 930
HpaII CCGG 2 cut(s) 494, 768
HphI GGTGA 1 cut(s) 956
Hpy166II GTNNAC 2 cut(s) 359, 868
Hpy188I TCNGA 1 cut(s) 725
Hpy188III TCNNGA 6 cut(s) 611, 621, 646, 752, 934, 1071
Hpy8I GTNNAC 2 cut(s) 359, 868
HpyAV CCTTC 9 cut(s) 253, 454, 469, 526, 677, 698, 803, 892, 1004
HpyCH4III ACNGT 2 cut(s) 107, 1039
HpyCH4V TGCA 6 cut(s) 18, 77, 143, 224, 507, 602
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 742, 842, 998
HpyF3I CTNAG 2 cut(s) 264, 411
Hsp92I GRCGYC 1 cut(s) 734
Hsp92II CATG 7 cut(s) 51, 197, 443, 483, 568, 761, 937
HspAI GCGC 1 cut(s) 734
KasI GGCGCC 1 cut(s) 733
Ksp22I TGATCA 1 cut(s) 448
Kzo9I GATC 1 cut(s) 448
Lsp1109I GCAGC 2 cut(s) 34, 394
LweI GCATC 2 cut(s) 367, 808
MaeI CTAG 1 cut(s) 593
MaeIII GTNAC 4 cut(s) 271, 778, 922, 1033
MalI GATC 1 cut(s) 450
MboI GATC 1 cut(s) 448
MboII GAAGA 5 cut(s) 292, 706, 892, 1019, 1069
MluCI AATT 8 cut(s) 198, 339, 420, 571, 580, 597, 916, 1044
Mly113I GGCGCC 1 cut(s) 734
MlyI GAGTC 2 cut(s) 157, 775
MnlI CCTC 8 cut(s) 63, 109, 465, 535, 556, 764, 898, 946
MroXI GAANNNNTTC 1 cut(s) 207
MseI TTAA 1 cut(s) 972
MslI CAYNNNNRTG 1 cut(s) 250
MspI CCGG 2 cut(s) 494, 768
MspR9I CCNGG 2 cut(s) 494, 673
MvaI CCWGG 1 cut(s) 673
MwoI GCNNNNNNNGC 4 cut(s) 83, 742, 842, 998
NarI GGCGCC 1 cut(s) 734
NciI CCSGG 1 cut(s) 494
NdeII GATC 1 cut(s) 448
NlaIII CATG 7 cut(s) 51, 197, 443, 483, 568, 761, 937
NlaIV GGNNCC 3 cut(s) 324, 537, 735
NmuCI GTSAC 2 cut(s) 778, 922
PaeR7I CTCGAG 1 cut(s) 332
PagI TCATGA 1 cut(s) 933
PceI AGGCCT 1 cut(s) 545
PdmI GAANNNNTTC 1 cut(s) 207
PfeI GAWTC 2 cut(s) 748, 930
PkrI GCNGC 3 cut(s) 24, 409, 738
PleI GAGTC 2 cut(s) 157, 775
PluTI GGCGCC 1 cut(s) 737
PpsI GAGTC 2 cut(s) 157, 775
PpuMI RGGWCCY 1 cut(s) 589
PshAI GACNNNNGTC 1 cut(s) 1064
Psp5II RGGWCCY 1 cut(s) 589
Psp6I CCWGG 1 cut(s) 671
PspGI CCWGG 1 cut(s) 671
PspN4I GGNNCC 3 cut(s) 324, 537, 735
PspPI GGNCC 3 cut(s) 491, 536, 589
PspPPI RGGWCCY 1 cut(s) 589
PspXI VCTCGAGB 1 cut(s) 332
RsaI GTAC 1 cut(s) 1018
RsaNI GTAC 1 cut(s) 1017
RseI CAYNNNNRTG 1 cut(s) 250
SaqAI TTAA 1 cut(s) 972
SatI GCNGC 3 cut(s) 23, 408, 737
Sau3AI GATC 1 cut(s) 448
Sau96I GGNCC 3 cut(s) 491, 536, 589
SchI GAGTC 2 cut(s) 157, 775
ScrFI CCNGG 2 cut(s) 494, 673
SfaNI GCATC 2 cut(s) 367, 808
SfoI GGCGCC 1 cut(s) 735
Sfr274I CTCGAG 1 cut(s) 332
SinI GGWCC 2 cut(s) 536, 589
SlaI CTCGAG 1 cut(s) 332
SmiMI CAYNNNNRTG 1 cut(s) 250
SmlI CTYRAG 3 cut(s) 54, 332, 752
SmoI CTYRAG 3 cut(s) 54, 332, 752
Sse9I AATT 8 cut(s) 198, 339, 420, 571, 580, 597, 916, 1044
SseBI AGGCCT 1 cut(s) 545
SsiI CCGC 2 cut(s) 737, 743
SspDI GGCGCC 1 cut(s) 733
SspMI CTAG 1 cut(s) 593
StuI AGGCCT 1 cut(s) 545
StyD4I CCNGG 2 cut(s) 492, 671
StyI CCWWGG 1 cut(s) 425
TaaI ACNGT 2 cut(s) 107, 1039
TaqI TCGA 1 cut(s) 333
TasI AATT 8 cut(s) 198, 339, 420, 571, 580, 597, 916, 1044
TauI GCSGC 1 cut(s) 739
TfiI GAWTC 2 cut(s) 748, 930
Tru1I TTAA 1 cut(s) 972
Tru9I TTAA 1 cut(s) 972
TseFI GTSAC 2 cut(s) 778, 922
TseI GCWGC 2 cut(s) 22, 407
Tsp45I GTSAC 2 cut(s) 778, 922
TspDTI ATGAA 8 cut(s) 210, 292, 363, 428, 570, 622, 774, 849
VpaK11BI GGWCC 2 cut(s) 536, 589
XapI RAATTY 3 cut(s) 339, 420, 916
XcmI CCANNNNNNNNNTGG 1 cut(s) 316
XhoI CTCGAG 1 cut(s) 332
XmnI GAANNNNTTC 1 cut(s) 207
XspI CTAG 1 cut(s) 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.