RchiOBHm_Chr6g0256211

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000135
Physical Location & Seq
Reverse (-)
11509574 .. 11510717
1144 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22982

Sequence Viewer

Length: 954 bp
ATGAAGGGAAAACTCGTGGAAGCTACCACTATGCTTGAACCAAAGGTTGATCAAATTCTAGACCAACATCGTCCTCATTGCCTTGTTGCAGATGCTGTATTTCATTGGGCTACAGATGTTGCTGCCAAGTTTGGGATTCCGAGGCTCGTCTTTCATGGAGCTGAATCTTTTGTTATTCCTAATCTCCCACATGAGATCAAGAGCACAAGAAACCAAGTACCGGCTTTTCTTAATGTGGATTCCAAAACAGAACTCTTCAAGCTGGTCAAAGCATCTATGGAGGTTGACGAAAGGAGCTTTGGGATTCTTGTTAACAGCTTCTACAAACTTGAACCAGAATATGCAGATCACTATAGGAAGGCAGAAGAAGATAAATCAGCGAGGGGAGAGGAAGGCTCTGCTGATGGAGTTCATGAATGCTTTGATTGGCTTAATACTAAGGAACTCAATTCGGTTGTTTATATATGTTTTGGAAGCCTTACCAATTTCAGTGATGCTCAGCTTGTAGAAATTGCCTTGGCTCTTGAGTCTTCTCATCAGCAATTCATTTGGGTTGTCAGGAAAGAAAAGAATGCTAAAGGAGAGTGGTTGCCTAATGAAGAATTTGAGCAGAGGTTAGAAGATAAGGGACTGATAATAAGAGGCTGGGCTCCCCAACTACTAATTCTTGAACATGAAGCAGTTGGGGCCTTTATGACTCATTGTGGGTGGAACTCTATCCTTGAAGGAGTGGCCGCTGGGGTGCCAATGATCACCTGGCCTGTGTCTGCAGAGCAGTTTTACAATGAGAAGTTGTTGAAGAGCGAAGCCAACGTGAAGATGGAGGCCATAGAGAATGCTGTGATTGAAATCATGGTGGGTGATGAAGCAAAGGAAATGAGAAGCAGAGTTAAAGAGCTTGGAGAGATAGGAAGCAAGGCTGTTGAAGAAGGCAGTTCATCGTTTTCGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

317

Amino Acids

35.64

Weight (kDa)

5.04

Isoelectric Point (pI)

34.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 142 - 270 5.9e-21 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000135)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15480 AT2G15480 AT2G15490 AT2G15490 AT2G15490 AT4G34131 AT4G34135 AT4G34135 AT4G34138
fragaria_vesca FvH4_2g05600 FvH4_2g05601 FvH4_2g05602 FvH4_2g05603 FvH4_2g05604 FvH4_2g05630 FvH4_2g05660 FvH4_2g05662 FvH4_2g05663 FvH4_2g05671 FvH4_2g05680 FvH4_3g09760 FvH4_3g09780 FvH4_7g23180
malus_domestica MD00G1046200.v1.1 MD04G1214200.v1.1 MD05G1085700.v1.1 MD05G1085800.v1.1 MD05G1086200.v1.1 MD05G1086300.v1.1 MD05G1091500.v1.1 MD07G1007400.v1.1 MD07G1007500.v1.1 MD07G1007600.v1.1 MD17G1100000.v1.1 MD17G1100300.v1.1
prunus_persica Prupe.8G129800_v2.0.a1 Prupe.8G130100_v2.0.a1 Prupe.8G130200_v2.0.a1 Prupe.8G130300_v2.0.a1 Prupe.8G130400_v2.0.a1 Prupe.8G130500_v2.0.a1 Prupe.8G130600_v2.0.a1 Prupe.8G130700_v2.0.a1 Prupe.8G130800_v2.0.a1 Prupe.8G130900_v2.0.a1 Prupe.8G131000_v2.0.a1 Prupe.8G131000_v2.0.a1
pyrus_communis pycom05g08530 pycom05g08560 pycom07g00600 pycom07g00610 pycom07g00620 pycom17g09520 pycom2675g00060
rosa_chinensis RchiOBHm_Chr2g0111601 RchiOBHm_Chr2g0125751 RchiOBHm_Chr6g0248631 RchiOBHm_Chr6g0248721 RchiOBHm_Chr6g0255881 RchiOBHm_Chr6g0255911 RchiOBHm_Chr6g0255931 RchiOBHm_Chr6g0256041 RchiOBHm_Chr6g0256061 RchiOBHm_Chr6g0256081 RchiOBHm_Chr6g0256121 RchiOBHm_Chr6g0256131 RchiOBHm_Chr6g0256151 RchiOBHm_Chr6g0256161 RchiOBHm_Chr6g0256211 RchiOBHm_Chr6g0256221 RchiOBHm_Chr6g0256241 RchiOBHm_Chr6g0256251 RchiOBHm_Chr6g0256311 RchiOBHm_Chr6g0256331 RchiOBHm_Chr6g0256351 RchiOBHm_Chr6g0256361 RchiOBHm_Chr6g0256371 RchiOBHm_Chr6g0256411 RchiOBHm_Chr6g0256421 RchiOBHm_Chr6g0256431 RchiOBHm_Chr6g0256461 RchiOBHm_Chr6g0256471 RchiOBHm_Chr6g0256501 RchiOBHm_Chr6g0256511 RchiOBHm_Chr6g0256521 RchiOBHm_Chr6g0256531 RchiOBHm_Chr6g0256611 RchiOBHm_Chr6g0257761 RchiOBHm_Chr6g0276931
rosa_laevigata RLG00000014720 RLG00000014721 RLG00000014763 RLG00000014766 RLG00000014768 RLG00000014769 RLG00000014770 RLG00000014774 RLG00000014776 RLG00000014777 RLG00000014778 RLG00000014781 RLG00000014782 RLG00000014783 RLG00000014786 RLG00000014787 RLG00000014788 RLG00000014789 RLG00000014790 RLG00000014791 RLG00000014793 RLG00000014795 RLG00000014799 RLG00000014800 RLG00000014803 RLG00000014805 RLG00000015130 RLG00000015139
rosa_multiflora Rmu_co8160604.1_g000001 Rmu_sc0001598.1_g000016 Rmu_sc0001598.1_g000018 Rmu_sc0001598.1_g000024 Rmu_sc0001738.1_g000012 Rmu_sc0001738.1_g000013 Rmu_sc0001896.1_g000025 Rmu_sc0001896.1_g000029 Rmu_sc0001896.1_g000037 Rmu_sc0001896.1_g000039 Rmu_sc0002393.1_g000006 Rmu_sc0002553.1_g000039 Rmu_sc0004414.1_g000007 Rmu_sc0005080.1_g000001 Rmu_sc0005080.1_g000002 Rmu_sc0005080.1_g000003 Rmu_sc0005080.1_g000006 Rmu_sc0005080.1_g000007 Rmu_sc0005080.1_g000008 Rmu_sc0005080.1_g000010 Rmu_sc0005080.1_g000011 Rmu_sc0005080.1_g000012 Rmu_sc0008707.1_g000001 Rmu_sc0008707.1_g000003 Rmu_sc0008832.1_g000002 Rmu_sc0010826.1_g000012 Rmu_sc0011315.1_g000009 Rmu_sc0019708.1_g000001
rosa_roxburghii Rroxscaffold_2G00108580 Rroxscaffold_7G00208920 Rroxscaffold_7G00209240 Rroxscaffold_7G00209250 Rroxscaffold_7G00209260 Rroxscaffold_7G00209270 Rroxscaffold_7G00209360 Rroxscaffold_7G00209380 Rroxscaffold_7G00209390 Rroxscaffold_7G00209430 Rroxscaffold_7G00209440 Rroxscaffold_7G00209510 Rroxscaffold_7G00209540
rosa_rugosa Rorug05G0532600 Rorug05G0562400 Rorug05G0562500 Rorug05G0563000 Rorug05G0563100 Rorug05G0563300 Rorug05G0563300 Rorug05G0563600 Rorug05G0563700 Rorug05G0563800 Rorug05G0564000 Rorug05G0564100 Rorug05G0564200 Rorug05G0564300 Rorug05G0564400 Rorug05G0564500 Rorug05G0564600 Rorug05G0564600 Rorug05G0568600 Rorug05G0568700
rosa_wichuraiana Rw6G004280 Rw6G004380 Rw6G006940 Rw6G006950 Rw6G006960 Rw6G007000 Rw6G007090 Rw6G007100 Rw6G007110 Rw6G007150 Rw6G007160 Rw6G007170 Rw6G007200 Rw6G007210 Rw6G007240 Rw6G007250 Rw6G007280 Rw6G007290 Rw6G007300 Rw6G007310 Rw6G007320 Rw6G007340 Rw6G007350 Rw6G007360 Rw6G007380 Rw6G007660 Rw6G018660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 742
AciI CCGC 1 cut(s) 735
AcoI YGGCCR 1 cut(s) 732
AcsI RAATTY 2 cut(s) 54, 602
AfaI GTAC 1 cut(s) 219
AfiI CCNNNNNNNGG 2 cut(s) 132, 220
AgsI TTSAA 8 cut(s) 38, 259, 332, 671, 725, 799, 848, 926
AjnI CCWGG 1 cut(s) 755
AjuI GAANNNNNNNTTGG 4 cut(s) 282, 314, 648, 680
AluBI AGCT 7 cut(s) 23, 161, 262, 297, 318, 502, 898
AluI AGCT 7 cut(s) 23, 161, 262, 297, 318, 502, 898
Alw21I GWGCWC 1 cut(s) 206
AlwNI CAGNNNCTG 1 cut(s) 95
AoxI GGCC 4 cut(s) 687, 732, 758, 825
ApeKI GCWGC 1 cut(s) 122
ApoI RAATTY 2 cut(s) 54, 602
AspS9I GGNCC 1 cut(s) 687
AsuHPI GGTGA 2 cut(s) 745, 872
BanI GGYRCC 1 cut(s) 742
BanII GRGCYC 1 cut(s) 652
BauI CACGAG 1 cut(s) 14
BbsI GAAGAC 1 cut(s) 522
Bbv12I GWGCWC 1 cut(s) 206
BbvI GCAGC 1 cut(s) 109
BccI CCATC 2 cut(s) 398, 814
BciT130I CCWGG 1 cut(s) 757
BclI TGATCA 2 cut(s) 49, 750
BfaI CTAG 1 cut(s) 59
BfmI CTRYAG 3 cut(s) 111, 352, 768
BisI GCNGC 2 cut(s) 123, 735
BlpI GCTNAGC 1 cut(s) 498
BlsI GCNGC 2 cut(s) 124, 736
Bme1390I CCNGG 1 cut(s) 757
BmgT120I GGNCC 1 cut(s) 687
BmiI GGNNCC 3 cut(s) 651, 688, 744
BmrFI CCNGG 1 cut(s) 757
BmsI GCATC 3 cut(s) 82, 281, 484
BpiI GAAGAC 1 cut(s) 522
BplI GAGNNNNNCTC 2 cut(s) 380, 412
Bpu1102I GCTNAGC 1 cut(s) 498
BpuEI CTTGAG 1 cut(s) 545
BsaBI GATNNNNATC 1 cut(s) 848
BsaJI CCNNGG 2 cut(s) 140, 516
Bsc4I CCNNNNNNNGG 2 cut(s) 132, 220
Bse118I RCCGGY 1 cut(s) 220
Bse3DI GCAATG 1 cut(s) 76
Bse8I GATNNNNATC 1 cut(s) 848
BseBI CCWGG 1 cut(s) 757
BseDI CCNNGG 2 cut(s) 140, 516
BseJI GATNNNNATC 1 cut(s) 848
BseLI CCNNNNNNNGG 2 cut(s) 132, 220
BseMI GCAATG 1 cut(s) 76
BseMII CTCAG 1 cut(s) 512
BseXI GCAGC 1 cut(s) 109
BseYI CCCAGC 2 cut(s) 645, 737
BshFI GGCC 4 cut(s) 689, 734, 760, 827
BshNI GGYRCC 1 cut(s) 742
BsiHKAI GWGCWC 1 cut(s) 206
BsiSI CCGG 1 cut(s) 221
BslFI GGGAC 1 cut(s) 642
BslI CCNNNNNNNGG 2 cut(s) 132, 220
BsmFI GGGAC 1 cut(s) 642
BsmI GAATGC 3 cut(s) 422, 577, 841
BsnI GGCC 4 cut(s) 689, 734, 760, 827
Bsp1286I GDGCHC 2 cut(s) 206, 652
Bsp143I GATC 4 cut(s) 49, 195, 346, 750
Bsp1720I GCTNAGC 1 cut(s) 498
BspACI CCGC 1 cut(s) 735
BspANI GGCC 4 cut(s) 689, 734, 760, 827
BspCNI CTCAG 1 cut(s) 511
BspHI TCATGA 1 cut(s) 412
BspLI GGNNCC 3 cut(s) 651, 688, 744
BspMAI CTGCAG 1 cut(s) 772
BspQI GCTCTTC 1 cut(s) 794
BspT107I GGYRCC 1 cut(s) 742
BsrDI GCAATG 1 cut(s) 76
BsrFI RCCGGY 1 cut(s) 220
BssAI RCCGGY 1 cut(s) 220
BssECI CCNNGG 2 cut(s) 140, 516
BssMI GATC 4 cut(s) 49, 195, 346, 750
BssSI CACGAG 1 cut(s) 14
BssT1I CCWWGG 1 cut(s) 516
Bst2BI CACGAG 1 cut(s) 14
Bst2UI CCWGG 1 cut(s) 757
Bst6I CTCTTC 2 cut(s) 260, 794
BstDEI CTNAG 2 cut(s) 438, 498
BstKTI GATC 4 cut(s) 52, 198, 349, 753
BstMBI GATC 4 cut(s) 49, 195, 346, 750
BstMWI GCNNNNNNNGC 1 cut(s) 686
BstNI CCWGG 1 cut(s) 757
BstSCI CCNGG 1 cut(s) 755
BstSFI CTRYAG 3 cut(s) 111, 352, 768
BstV1I GCAGC 1 cut(s) 109
BstV2I GAAGAC 1 cut(s) 522
BsuRI GGCC 4 cut(s) 689, 734, 760, 827
BtsIMutI CAGTG 1 cut(s) 496
CaiI CAGNNNCTG 1 cut(s) 95
CciI TCATGA 1 cut(s) 412
Cfr10I RCCGGY 1 cut(s) 220
Cfr13I GGNCC 1 cut(s) 687
Csp6I GTAC 1 cut(s) 218
CspCI CAANNNNNGTGG 2 cut(s) 16, 51
CviAII CATG 5 cut(s) 155, 191, 413, 674, 853
CviQI GTAC 1 cut(s) 218
DdeI CTNAG 2 cut(s) 438, 498
DpnI GATC 4 cut(s) 51, 197, 348, 752
DpnII GATC 4 cut(s) 49, 195, 346, 750
EaeI YGGCCR 1 cut(s) 732
Eam1104I CTCTTC 2 cut(s) 260, 794
EarI CTCTTC 2 cut(s) 260, 794
Eco130I CCWWGG 1 cut(s) 516
Eco24I GRGCYC 1 cut(s) 652
EcoO109I RGGNCCY 1 cut(s) 687
EcoRII CCWGG 1 cut(s) 755
EcoT14I CCWWGG 1 cut(s) 516
EcoT38I GRGCYC 1 cut(s) 652
ErhI CCWWGG 1 cut(s) 516
FaeI CATG 5 cut(s) 158, 194, 416, 677, 856
FaqI GGGAC 1 cut(s) 642
FatI CATG 5 cut(s) 154, 190, 412, 673, 852
FbaI TGATCA 2 cut(s) 49, 750
Fnu4HI GCNGC 2 cut(s) 123, 735
FriOI GRGCYC 1 cut(s) 652
Fsp4HI GCNGC 2 cut(s) 123, 735
FspBI CTAG 1 cut(s) 59
GluI GCNGC 2 cut(s) 123, 735
GsaI CCCAGC 2 cut(s) 649, 741
HaeIII GGCC 4 cut(s) 689, 734, 760, 827
HapII CCGG 1 cut(s) 221
Hin1II CATG 5 cut(s) 158, 194, 416, 677, 856
HincII GTYRAC 2 cut(s) 286, 313
HindII GTYRAC 2 cut(s) 286, 313
HinfI GANTC 6 cut(s) 136, 164, 239, 304, 527, 697
HpaI GTTAAC 1 cut(s) 313
HpaII CCGG 1 cut(s) 221
HphI GGTGA 2 cut(s) 745, 872
Hpy166II GTNNAC 2 cut(s) 286, 313
Hpy188I TCNGA 1 cut(s) 141
Hpy188III TCNNGA 6 cut(s) 59, 199, 413, 524, 559, 668
Hpy8I GTNNAC 2 cut(s) 286, 313
HpyAV CCTTC 4 cut(s) 352, 386, 719, 923
HpyCH4IV ACGT 1 cut(s) 813
HpyCH4V TGCA 3 cut(s) 89, 344, 770
HpyF10VI GCNNNNNNNGC 1 cut(s) 686
HpyF3I CTNAG 2 cut(s) 438, 498
HpySE526I ACGT 1 cut(s) 813
Hsp92II CATG 5 cut(s) 158, 194, 416, 677, 856
Ksp22I TGATCA 2 cut(s) 49, 750
KspAI GTTAAC 1 cut(s) 313
Kzo9I GATC 4 cut(s) 49, 195, 346, 750
LguI GCTCTTC 1 cut(s) 794
LmnI GCTCC 3 cut(s) 158, 294, 655
LpnPI CCDG 9 cut(s) 234, 248, 348, 544, 631, 723, 742, 769, 774
Lsp1109I GCAGC 1 cut(s) 109
LweI GCATC 3 cut(s) 82, 281, 484
MaeI CTAG 1 cut(s) 59
MaeII ACGT 1 cut(s) 813
MalI GATC 4 cut(s) 51, 197, 348, 752
MboI GATC 4 cut(s) 49, 195, 346, 750
MboII GAAGA 9 cut(s) 247, 377, 380, 522, 611, 632, 811, 829, 938
MhlI GDGCHC 2 cut(s) 206, 652
MluCI AATT 7 cut(s) 54, 448, 484, 510, 542, 602, 663
MlyI GAGTC 2 cut(s) 536, 691
MnlI CCTC 8 cut(s) 84, 135, 274, 375, 382, 606, 635, 817
MseI TTAA 5 cut(s) 231, 312, 432, 891, 952
MspA1I CMGCKG 1 cut(s) 737
MspI CCGG 1 cut(s) 221
MspR9I CCNGG 1 cut(s) 757
Mva1269I GAATGC 3 cut(s) 422, 577, 841
MvaI CCWGG 1 cut(s) 757
MwoI GCNNNNNNNGC 1 cut(s) 686
NdeII GATC 4 cut(s) 49, 195, 346, 750
NlaIII CATG 5 cut(s) 158, 194, 416, 677, 856
NlaIV GGNNCC 3 cut(s) 651, 688, 744
PagI TCATGA 1 cut(s) 412
PciSI GCTCTTC 1 cut(s) 794
PctI GAATGC 3 cut(s) 422, 577, 841
PfeI GAWTC 4 cut(s) 136, 164, 239, 304
PkrI GCNGC 2 cut(s) 124, 736
PleI GAGTC 2 cut(s) 535, 691
PpsI GAGTC 2 cut(s) 535, 691
Psp6I CCWGG 1 cut(s) 755
PspFI CCCAGC 2 cut(s) 645, 737
PspGI CCWGG 1 cut(s) 755
PspN4I GGNNCC 3 cut(s) 651, 688, 744
PspPI GGNCC 1 cut(s) 687
PstI CTGCAG 1 cut(s) 772
PstNI CAGNNNCTG 1 cut(s) 95
RsaI GTAC 1 cut(s) 219
RsaNI GTAC 1 cut(s) 218
SapI GCTCTTC 1 cut(s) 794
SaqAI TTAA 5 cut(s) 231, 312, 432, 891, 952
SatI GCNGC 2 cut(s) 123, 735
Sau3AI GATC 4 cut(s) 49, 195, 346, 750
Sau96I GGNCC 1 cut(s) 687
SchI GAGTC 2 cut(s) 536, 691
ScrFI CCNGG 1 cut(s) 757
SduI GDGCHC 2 cut(s) 206, 652
SfaNI GCATC 3 cut(s) 82, 281, 484
SfcI CTRYAG 3 cut(s) 111, 352, 768
SmlI CTYRAG 1 cut(s) 524
SmoI CTYRAG 1 cut(s) 524
Sse9I AATT 7 cut(s) 54, 448, 484, 510, 542, 602, 663
SsiI CCGC 1 cut(s) 735
SspMI CTAG 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 755
StyI CCWWGG 1 cut(s) 516
TaiI ACGT 1 cut(s) 816
TaqI TCGA 1 cut(s) 947
TasI AATT 7 cut(s) 54, 448, 484, 510, 542, 602, 663
TauI GCSGC 1 cut(s) 737
TfiI GAWTC 4 cut(s) 136, 164, 239, 304
Tru1I TTAA 5 cut(s) 231, 312, 432, 891, 952
Tru9I TTAA 5 cut(s) 231, 312, 432, 891, 952
TscAI CASTG 1 cut(s) 496
TseI GCWGC 1 cut(s) 122
TspRI CASTG 1 cut(s) 496
XapI RAATTY 2 cut(s) 54, 602
XbaI TCTAGA 1 cut(s) 58
XcmI CCANNNNNNNNNTGG 2 cut(s) 753, 817
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.