Rorug05G0564300

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
75559482 .. 75560225
744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0564300.1

Sequence Viewer

Length: 411 bp
ATGGCTCGTACCAAGCAGACCGCTCGCAAGTCCACCGGAGGAAAGGCGCCGAGAAAACAGCTGGCGACCAAGGCAGCCCGGAAGTCGGCTCCGGCGACCGGAGGAGTGAAGAAGCCTCACCGGTTCAGGCCGGGAACGGTGGCGCTGAGAGAGATCAGGAAGTACCAGAAGAGCACGGAGCTTCTGATCCGCAAGCTTCCGTTCCAGAGGCTTGTGAGGGAGATTGCTCAGGATTTCAAGACTGATCTCCGATTCCAGAGCAGCGCCGTGGCGGCGCTTCAGGAGGCGGCGGAGGCGTATCTGGTGGGGCTTTTCGAGGATACGAATCTGTGTGCTATTCATGCGAAGAGGGTTACCATTATGCCCAAGGATATTCAGCTTGCTAGGAGAATCAGAGGCGAGAGGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

136

Amino Acids

15.27

Weight (kDa)

11.29

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 44 - 131 8.7e-39 Core histone H2A/H2B/H3/H4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000135)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15480 AT2G15480 AT2G15490 AT2G15490 AT2G15490 AT4G34131 AT4G34135 AT4G34135 AT4G34138
fragaria_vesca FvH4_2g05600 FvH4_2g05601 FvH4_2g05602 FvH4_2g05603 FvH4_2g05604 FvH4_2g05630 FvH4_2g05660 FvH4_2g05662 FvH4_2g05663 FvH4_2g05671 FvH4_2g05680 FvH4_3g09760 FvH4_3g09780 FvH4_7g23180
malus_domestica MD00G1046200.v1.1 MD04G1214200.v1.1 MD05G1085700.v1.1 MD05G1085800.v1.1 MD05G1086200.v1.1 MD05G1086300.v1.1 MD05G1091500.v1.1 MD07G1007400.v1.1 MD07G1007500.v1.1 MD07G1007600.v1.1 MD17G1100000.v1.1 MD17G1100300.v1.1
prunus_persica Prupe.8G129800_v2.0.a1 Prupe.8G130100_v2.0.a1 Prupe.8G130200_v2.0.a1 Prupe.8G130300_v2.0.a1 Prupe.8G130400_v2.0.a1 Prupe.8G130500_v2.0.a1 Prupe.8G130600_v2.0.a1 Prupe.8G130700_v2.0.a1 Prupe.8G130800_v2.0.a1 Prupe.8G130900_v2.0.a1 Prupe.8G131000_v2.0.a1 Prupe.8G131000_v2.0.a1
pyrus_communis pycom05g08530 pycom05g08560 pycom07g00600 pycom07g00610 pycom07g00620 pycom17g09520 pycom2675g00060
rosa_chinensis RchiOBHm_Chr2g0111601 RchiOBHm_Chr2g0125751 RchiOBHm_Chr6g0248631 RchiOBHm_Chr6g0248721 RchiOBHm_Chr6g0255881 RchiOBHm_Chr6g0255911 RchiOBHm_Chr6g0255931 RchiOBHm_Chr6g0256041 RchiOBHm_Chr6g0256061 RchiOBHm_Chr6g0256081 RchiOBHm_Chr6g0256121 RchiOBHm_Chr6g0256131 RchiOBHm_Chr6g0256151 RchiOBHm_Chr6g0256161 RchiOBHm_Chr6g0256211 RchiOBHm_Chr6g0256221 RchiOBHm_Chr6g0256241 RchiOBHm_Chr6g0256251 RchiOBHm_Chr6g0256311 RchiOBHm_Chr6g0256331 RchiOBHm_Chr6g0256351 RchiOBHm_Chr6g0256361 RchiOBHm_Chr6g0256371 RchiOBHm_Chr6g0256411 RchiOBHm_Chr6g0256421 RchiOBHm_Chr6g0256431 RchiOBHm_Chr6g0256461 RchiOBHm_Chr6g0256471 RchiOBHm_Chr6g0256501 RchiOBHm_Chr6g0256511 RchiOBHm_Chr6g0256521 RchiOBHm_Chr6g0256531 RchiOBHm_Chr6g0256611 RchiOBHm_Chr6g0257761 RchiOBHm_Chr6g0276931
rosa_laevigata RLG00000014720 RLG00000014721 RLG00000014763 RLG00000014766 RLG00000014768 RLG00000014769 RLG00000014770 RLG00000014774 RLG00000014776 RLG00000014777 RLG00000014778 RLG00000014781 RLG00000014782 RLG00000014783 RLG00000014786 RLG00000014787 RLG00000014788 RLG00000014789 RLG00000014790 RLG00000014791 RLG00000014793 RLG00000014795 RLG00000014799 RLG00000014800 RLG00000014803 RLG00000014805 RLG00000015130 RLG00000015139
rosa_multiflora Rmu_co8160604.1_g000001 Rmu_sc0001598.1_g000016 Rmu_sc0001598.1_g000018 Rmu_sc0001598.1_g000024 Rmu_sc0001738.1_g000012 Rmu_sc0001738.1_g000013 Rmu_sc0001896.1_g000025 Rmu_sc0001896.1_g000029 Rmu_sc0001896.1_g000037 Rmu_sc0001896.1_g000039 Rmu_sc0002393.1_g000006 Rmu_sc0002553.1_g000039 Rmu_sc0004414.1_g000007 Rmu_sc0005080.1_g000001 Rmu_sc0005080.1_g000002 Rmu_sc0005080.1_g000003 Rmu_sc0005080.1_g000006 Rmu_sc0005080.1_g000007 Rmu_sc0005080.1_g000008 Rmu_sc0005080.1_g000010 Rmu_sc0005080.1_g000011 Rmu_sc0005080.1_g000012 Rmu_sc0008707.1_g000001 Rmu_sc0008707.1_g000003 Rmu_sc0008832.1_g000002 Rmu_sc0010826.1_g000012 Rmu_sc0011315.1_g000009 Rmu_sc0019708.1_g000001
rosa_roxburghii Rroxscaffold_2G00108580 Rroxscaffold_7G00208920 Rroxscaffold_7G00209240 Rroxscaffold_7G00209250 Rroxscaffold_7G00209260 Rroxscaffold_7G00209270 Rroxscaffold_7G00209360 Rroxscaffold_7G00209380 Rroxscaffold_7G00209390 Rroxscaffold_7G00209430 Rroxscaffold_7G00209440 Rroxscaffold_7G00209510 Rroxscaffold_7G00209540
rosa_rugosa Rorug05G0532600 Rorug05G0562400 Rorug05G0562500 Rorug05G0563000 Rorug05G0563100 Rorug05G0563300 Rorug05G0563300 Rorug05G0563600 Rorug05G0563700 Rorug05G0563800 Rorug05G0564000 Rorug05G0564100 Rorug05G0564200 Rorug05G0564300 Rorug05G0564400 Rorug05G0564500 Rorug05G0564600 Rorug05G0564600 Rorug05G0568600 Rorug05G0568700
rosa_wichuraiana Rw6G004280 Rw6G004380 Rw6G006940 Rw6G006950 Rw6G006960 Rw6G007000 Rw6G007090 Rw6G007100 Rw6G007110 Rw6G007150 Rw6G007160 Rw6G007170 Rw6G007200 Rw6G007210 Rw6G007240 Rw6G007250 Rw6G007280 Rw6G007290 Rw6G007300 Rw6G007310 Rw6G007320 Rw6G007340 Rw6G007350 Rw6G007360 Rw6G007380 Rw6G007660 Rw6G018660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 46
AccBSI CCGCTC 1 cut(s) 23
AciI CCGC 5 cut(s) 21, 190, 272, 287, 290
AclWI GGATC 1 cut(s) 181
AcuI CTGAAG 1 cut(s) 263
AcyI GRCGYC 1 cut(s) 47
AfaI GTAC 2 cut(s) 10, 164
AfiI CCNNNNNNNGG 2 cut(s) 85, 98
AgeI ACCGGT 1 cut(s) 120
AgsI TTSAA 1 cut(s) 238
AluBI AGCT 4 cut(s) 61, 181, 196, 379
AluI AGCT 4 cut(s) 61, 181, 196, 379
Alw21I GWGCWC 1 cut(s) 176
AlwI GGATC 1 cut(s) 181
AoxI GGCC 1 cut(s) 128
ApeKI GCWGC 2 cut(s) 74, 261
AsiGI ACCGGT 1 cut(s) 120
AspLEI GCGC 4 cut(s) 49, 145, 266, 277
AsuC2I CCSGG 2 cut(s) 79, 132
AsuHPI GGTGA 1 cut(s) 110
BanI GGYRCC 1 cut(s) 46
Bbv12I GWGCWC 1 cut(s) 176
BbvI GCAGC 2 cut(s) 86, 273
BceAI ACGGC 1 cut(s) 251
BcgI CGANNNNNNTGC 2 cut(s) 5, 39
BciVI GTATCC 1 cut(s) 313
BcnI CCSGG 2 cut(s) 79, 132
BfaI CTAG 1 cut(s) 384
BfoI RGCGCY 4 cut(s) 50, 146, 267, 278
BfuI GTATCC 1 cut(s) 313
BglI GCCNNNNNGGC 1 cut(s) 272
BisI GCNGC 4 cut(s) 75, 262, 273, 288
BlsI GCNGC 4 cut(s) 76, 263, 274, 289
Bme1390I CCNGG 2 cut(s) 79, 132
BmiI GGNNCC 2 cut(s) 48, 90
BmrFI CCNGG 2 cut(s) 79, 132
Bpu10I CCTNAGC 1 cut(s) 228
BpuMI CCSGG 2 cut(s) 79, 132
BsaBI GATNNNNATC 1 cut(s) 324
BsaHI GRCGYC 1 cut(s) 47
BsaJI CCNNGG 3 cut(s) 69, 267, 366
BsaWI WCCGGW 3 cut(s) 35, 98, 120
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 98
Bse118I RCCGGY 1 cut(s) 120
Bse8I GATNNNNATC 1 cut(s) 324
BseDI CCNNGG 3 cut(s) 69, 267, 366
BseJI GATNNNNATC 1 cut(s) 324
BseLI CCNNNNNNNGG 2 cut(s) 85, 98
BseMII CTCAG 2 cut(s) 137, 242
BseRI GAGGAG 1 cut(s) 117
BseXI GCAGC 2 cut(s) 86, 273
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 1 cut(s) 130
BshNI GGYRCC 1 cut(s) 46
BshTI ACCGGT 1 cut(s) 120
BsiEI CGRYCG 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 176
BsiSI CCGG 6 cut(s) 36, 79, 92, 99, 121, 131
BslI CCNNNNNNNGG 2 cut(s) 85, 98
BsnI GGCC 1 cut(s) 130
Bsp1286I GDGCHC 1 cut(s) 176
Bsp143I GATC 3 cut(s) 153, 186, 244
BspACI CCGC 5 cut(s) 21, 190, 272, 287, 290
BspANI GGCC 1 cut(s) 130
BspCNI CTCAG 2 cut(s) 138, 241
BspLI GGNNCC 2 cut(s) 48, 90
BspPI GGATC 1 cut(s) 181
BspQI GCTCTTC 1 cut(s) 164
BspT107I GGYRCC 1 cut(s) 46
BsrBI CCGCTC 1 cut(s) 23
BsrFI RCCGGY 1 cut(s) 120
BssAI RCCGGY 1 cut(s) 120
BssECI CCNNGG 3 cut(s) 69, 267, 366
BssMI GATC 3 cut(s) 153, 186, 244
BssNI GRCGYC 1 cut(s) 47
BssT1I CCWWGG 2 cut(s) 69, 366
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 2 cut(s) 164, 341
BstACI GRCGYC 1 cut(s) 47
BstC8I GCNNGC 4 cut(s) 25, 63, 194, 381
BstDEI CTNAG 3 cut(s) 146, 228, 408
BstDSI CCRYGG 1 cut(s) 267
BstEII GGTNACC 1 cut(s) 352
BstH2I RGCGCY 4 cut(s) 50, 146, 267, 278
BstHHI GCGC 4 cut(s) 49, 145, 266, 277
BstKTI GATC 3 cut(s) 156, 189, 247
BstMBI GATC 3 cut(s) 153, 186, 244
BstMCI CGRYCG 1 cut(s) 99
BstMWI GCNNNNNNNGC 4 cut(s) 71, 272, 293, 341
BstPI GGTNACC 1 cut(s) 352
BstSCI CCNGG 2 cut(s) 77, 130
BstV1I GCAGC 2 cut(s) 86, 273
BsuI GTATCC 1 cut(s) 313
BsuRI GGCC 1 cut(s) 130
BtgI CCRYGG 1 cut(s) 267
Cac8I GCNNGC 4 cut(s) 25, 63, 194, 381
CfoI GCGC 4 cut(s) 49, 145, 266, 277
Cfr10I RCCGGY 1 cut(s) 120
Csp6I GTAC 2 cut(s) 9, 163
CspAI ACCGGT 1 cut(s) 120
CviAII CATG 1 cut(s) 341
CviQI GTAC 2 cut(s) 9, 163
DdeI CTNAG 3 cut(s) 146, 228, 408
DinI GGCGCC 1 cut(s) 48
DpnI GATC 3 cut(s) 155, 188, 246
DpnII GATC 3 cut(s) 153, 186, 244
Eam1104I CTCTTC 2 cut(s) 164, 341
EarI CTCTTC 2 cut(s) 164, 341
EciI GGCGGA 1 cut(s) 305
Eco130I CCWWGG 2 cut(s) 69, 366
Eco57I CTGAAG 1 cut(s) 263
Eco91I GGTNACC 1 cut(s) 352
EcoO65I GGTNACC 1 cut(s) 352
EcoT14I CCWWGG 2 cut(s) 69, 366
EgeI GGCGCC 1 cut(s) 48
EheI GGCGCC 1 cut(s) 48
ErhI CCWWGG 2 cut(s) 69, 366
FaeI CATG 1 cut(s) 344
FaiI YATR 2 cut(s) 342, 362
FatI CATG 1 cut(s) 340
Fnu4HI GCNGC 4 cut(s) 75, 262, 273, 288
Fsp4HI GCNGC 4 cut(s) 75, 262, 273, 288
FspBI CTAG 1 cut(s) 384
GlaI GCGC 4 cut(s) 48, 144, 265, 276
GluI GCNGC 4 cut(s) 75, 262, 273, 288
HaeII RGCGCY 4 cut(s) 50, 146, 267, 278
HaeIII GGCC 1 cut(s) 130
HapII CCGG 6 cut(s) 36, 79, 92, 99, 121, 131
HhaI GCGC 4 cut(s) 49, 145, 266, 277
Hin1I GRCGYC 1 cut(s) 47
Hin1II CATG 1 cut(s) 344
Hin6I GCGC 4 cut(s) 47, 143, 264, 275
HinP1I GCGC 4 cut(s) 47, 143, 264, 275
HindIII AAGCTT 1 cut(s) 194
HinfI GANTC 3 cut(s) 252, 325, 390
HpaII CCGG 6 cut(s) 36, 79, 92, 99, 121, 131
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 1 cut(s) 33
Hpy188I TCNGA 3 cut(s) 186, 251, 395
Hpy188III TCNNGA 6 cut(s) 157, 205, 230, 238, 256, 281
Hpy8I GTNNAC 1 cut(s) 33
HpyCH4III ACNGT 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 272, 293, 341
HpyF3I CTNAG 3 cut(s) 146, 228, 408
Hsp92I GRCGYC 1 cut(s) 47
Hsp92II CATG 1 cut(s) 344
HspAI GCGC 4 cut(s) 47, 143, 264, 275
KasI GGCGCC 1 cut(s) 46
Kzo9I GATC 3 cut(s) 153, 186, 244
LguI GCTCTTC 1 cut(s) 164
LmnI GCTCC 2 cut(s) 94, 178
Lsp1109I GCAGC 2 cut(s) 86, 273
MaeI CTAG 1 cut(s) 384
MaeIII GTNAC 1 cut(s) 352
MalI GATC 3 cut(s) 155, 188, 246
MbiI CCGCTC 1 cut(s) 23
MboI GATC 3 cut(s) 153, 186, 244
MboII GAAGA 3 cut(s) 121, 181, 358
MhlI GDGCHC 1 cut(s) 176
Mly113I GGCGCC 1 cut(s) 47
MspA1I CMGCKG 1 cut(s) 61
MspI CCGG 6 cut(s) 36, 79, 92, 99, 121, 131
MspR9I CCNGG 2 cut(s) 79, 132
MwoI GCNNNNNNNGC 4 cut(s) 71, 272, 293, 341
NarI GGCGCC 1 cut(s) 47
NciI CCSGG 2 cut(s) 79, 132
NdeII GATC 3 cut(s) 153, 186, 244
NlaIII CATG 1 cut(s) 344
NlaIV GGNNCC 2 cut(s) 48, 90
NmeAIII GCCGAG 1 cut(s) 75
PciSI GCTCTTC 1 cut(s) 164
PcsI WCGNNNNNNNCGW 1 cut(s) 92
PfeI GAWTC 3 cut(s) 252, 325, 390
PinAI ACCGGT 1 cut(s) 120
PkrI GCNGC 4 cut(s) 76, 263, 274, 289
PluTI GGCGCC 1 cut(s) 50
PspEI GGTNACC 1 cut(s) 352
PspN4I GGNNCC 2 cut(s) 48, 90
PvuII CAGCTG 1 cut(s) 61
RsaI GTAC 2 cut(s) 10, 164
RsaNI GTAC 2 cut(s) 9, 163
SapI GCTCTTC 1 cut(s) 164
SatI GCNGC 4 cut(s) 75, 262, 273, 288
Sau3AI GATC 3 cut(s) 153, 186, 244
ScrFI CCNGG 2 cut(s) 79, 132
SduI GDGCHC 1 cut(s) 176
SetI ASST 4 cut(s) 63, 183, 198, 381
SfoI GGCGCC 1 cut(s) 48
SsiI CCGC 5 cut(s) 21, 190, 272, 287, 290
SspDI GGCGCC 1 cut(s) 46
SspMI CTAG 1 cut(s) 384
StyD4I CCNGG 2 cut(s) 77, 130
StyI CCWWGG 2 cut(s) 69, 366
TaaI ACNGT 1 cut(s) 139
TaqI TCGA 1 cut(s) 315
TauI GCSGC 2 cut(s) 275, 290
TfiI GAWTC 3 cut(s) 252, 325, 390
TseI GCWGC 2 cut(s) 74, 261
TspDTI ATGAA 1 cut(s) 329
TspGWI ACGGA 2 cut(s) 189, 191
XspI CTAG 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.