Rmu_sc0008832.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008832.1
OG0000135
Physical Location & Seq
Forward (+)
2860 .. 3234
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008832.1_g000002.1.cds

Sequence Viewer

Length: 375 bp
atgagggcactccaaggagtgctaccatcaccatctgggtcaatactggcctcctcgacctccaccatgaccaccacaggctgcaccaccatcttcttgctcaggctagctacaagtaactccttactttccaaagcaaccttgaaagcacgtctccttctgaacttggcttccccatttatctatagtcacctagcaggcttggggttgttcttctgccccagaggcctgcccacctttgccttcttaactggtaaaaccagaatcacctcattaacagtcttaagagctaattcaggctcaaaacaaagctggaccacctctgagcttaccaccactaccttcacctcaggtcgcacccgcttactatattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.25

Weight (kDa)

11.57

Isoelectric Point (pI)

40.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000135)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15480 AT2G15480 AT2G15490 AT2G15490 AT2G15490 AT4G34131 AT4G34135 AT4G34135 AT4G34138
fragaria_vesca FvH4_2g05600 FvH4_2g05601 FvH4_2g05602 FvH4_2g05603 FvH4_2g05604 FvH4_2g05630 FvH4_2g05660 FvH4_2g05662 FvH4_2g05663 FvH4_2g05671 FvH4_2g05680 FvH4_3g09760 FvH4_3g09780 FvH4_7g23180
malus_domestica MD00G1046200.v1.1 MD04G1214200.v1.1 MD05G1085700.v1.1 MD05G1085800.v1.1 MD05G1086200.v1.1 MD05G1086300.v1.1 MD05G1091500.v1.1 MD07G1007400.v1.1 MD07G1007500.v1.1 MD07G1007600.v1.1 MD17G1100000.v1.1 MD17G1100300.v1.1
prunus_persica Prupe.8G129800_v2.0.a1 Prupe.8G130100_v2.0.a1 Prupe.8G130200_v2.0.a1 Prupe.8G130300_v2.0.a1 Prupe.8G130400_v2.0.a1 Prupe.8G130500_v2.0.a1 Prupe.8G130600_v2.0.a1 Prupe.8G130700_v2.0.a1 Prupe.8G130800_v2.0.a1 Prupe.8G130900_v2.0.a1 Prupe.8G131000_v2.0.a1 Prupe.8G131000_v2.0.a1
pyrus_communis pycom05g08530 pycom05g08560 pycom07g00600 pycom07g00610 pycom07g00620 pycom17g09520 pycom2675g00060
rosa_chinensis RchiOBHm_Chr2g0111601 RchiOBHm_Chr2g0125751 RchiOBHm_Chr6g0248631 RchiOBHm_Chr6g0248721 RchiOBHm_Chr6g0255881 RchiOBHm_Chr6g0255911 RchiOBHm_Chr6g0255931 RchiOBHm_Chr6g0256041 RchiOBHm_Chr6g0256061 RchiOBHm_Chr6g0256081 RchiOBHm_Chr6g0256121 RchiOBHm_Chr6g0256131 RchiOBHm_Chr6g0256151 RchiOBHm_Chr6g0256161 RchiOBHm_Chr6g0256211 RchiOBHm_Chr6g0256221 RchiOBHm_Chr6g0256241 RchiOBHm_Chr6g0256251 RchiOBHm_Chr6g0256311 RchiOBHm_Chr6g0256331 RchiOBHm_Chr6g0256351 RchiOBHm_Chr6g0256361 RchiOBHm_Chr6g0256371 RchiOBHm_Chr6g0256411 RchiOBHm_Chr6g0256421 RchiOBHm_Chr6g0256431 RchiOBHm_Chr6g0256461 RchiOBHm_Chr6g0256471 RchiOBHm_Chr6g0256501 RchiOBHm_Chr6g0256511 RchiOBHm_Chr6g0256521 RchiOBHm_Chr6g0256531 RchiOBHm_Chr6g0256611 RchiOBHm_Chr6g0257761 RchiOBHm_Chr6g0276931
rosa_laevigata RLG00000014720 RLG00000014721 RLG00000014763 RLG00000014766 RLG00000014768 RLG00000014769 RLG00000014770 RLG00000014774 RLG00000014776 RLG00000014777 RLG00000014778 RLG00000014781 RLG00000014782 RLG00000014783 RLG00000014786 RLG00000014787 RLG00000014788 RLG00000014789 RLG00000014790 RLG00000014791 RLG00000014793 RLG00000014795 RLG00000014799 RLG00000014800 RLG00000014803 RLG00000014805 RLG00000015130 RLG00000015139
rosa_multiflora Rmu_co8160604.1_g000001 Rmu_sc0001598.1_g000016 Rmu_sc0001598.1_g000018 Rmu_sc0001598.1_g000024 Rmu_sc0001738.1_g000012 Rmu_sc0001738.1_g000013 Rmu_sc0001896.1_g000025 Rmu_sc0001896.1_g000029 Rmu_sc0001896.1_g000037 Rmu_sc0001896.1_g000039 Rmu_sc0002393.1_g000006 Rmu_sc0002553.1_g000039 Rmu_sc0004414.1_g000007 Rmu_sc0005080.1_g000001 Rmu_sc0005080.1_g000002 Rmu_sc0005080.1_g000003 Rmu_sc0005080.1_g000006 Rmu_sc0005080.1_g000007 Rmu_sc0005080.1_g000008 Rmu_sc0005080.1_g000010 Rmu_sc0005080.1_g000011 Rmu_sc0005080.1_g000012 Rmu_sc0008707.1_g000001 Rmu_sc0008707.1_g000003 Rmu_sc0008832.1_g000002 Rmu_sc0010826.1_g000012 Rmu_sc0011315.1_g000009 Rmu_sc0019708.1_g000001
rosa_roxburghii Rroxscaffold_2G00108580 Rroxscaffold_7G00208920 Rroxscaffold_7G00209240 Rroxscaffold_7G00209250 Rroxscaffold_7G00209260 Rroxscaffold_7G00209270 Rroxscaffold_7G00209360 Rroxscaffold_7G00209380 Rroxscaffold_7G00209390 Rroxscaffold_7G00209430 Rroxscaffold_7G00209440 Rroxscaffold_7G00209510 Rroxscaffold_7G00209540
rosa_rugosa Rorug05G0532600 Rorug05G0562400 Rorug05G0562500 Rorug05G0563000 Rorug05G0563100 Rorug05G0563300 Rorug05G0563300 Rorug05G0563600 Rorug05G0563700 Rorug05G0563800 Rorug05G0564000 Rorug05G0564100 Rorug05G0564200 Rorug05G0564300 Rorug05G0564400 Rorug05G0564500 Rorug05G0564600 Rorug05G0564600 Rorug05G0568600 Rorug05G0568700
rosa_wichuraiana Rw6G004280 Rw6G004380 Rw6G006940 Rw6G006950 Rw6G006960 Rw6G007000 Rw6G007090 Rw6G007100 Rw6G007110 Rw6G007150 Rw6G007160 Rw6G007170 Rw6G007200 Rw6G007210 Rw6G007240 Rw6G007250 Rw6G007280 Rw6G007290 Rw6G007300 Rw6G007310 Rw6G007320 Rw6G007340 Rw6G007350 Rw6G007360 Rw6G007380 Rw6G007660 Rw6G018660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 361
AflII CTTAAG 1 cut(s) 283
AgsI TTSAA 1 cut(s) 145
AjiI CACGTC 1 cut(s) 152
AloI GAACNNNNNNTCC 2 cut(s) 155, 187
AluBI AGCT 4 cut(s) 110, 290, 312, 328
AluI AGCT 4 cut(s) 110, 290, 312, 328
Alw26I GTCTC 1 cut(s) 158
AoxI GGCC 2 cut(s) 48, 226
ApeKI GCWGC 1 cut(s) 81
AspS9I GGNCC 1 cut(s) 315
AsuHPI GGTGA 4 cut(s) 21, 182, 259, 337
AsuNHI GCTAGC 1 cut(s) 106
AvaII GGWCC 1 cut(s) 315
AxyI CCTNAGG 1 cut(s) 349
BaeGI GKGCMC 1 cut(s) 10
BbvI GCAGC 1 cut(s) 68
BccI CCATC 3 cut(s) 34, 40, 98
BcoDI GTCTC 1 cut(s) 158
BfaI CTAG 2 cut(s) 107, 194
BfmI CTRYAG 1 cut(s) 184
BfrI CTTAAG 1 cut(s) 283
BglI GCCNNNNNGGC 1 cut(s) 225
BisI GCNGC 1 cut(s) 82
BlsI GCNGC 1 cut(s) 83
Bme18I GGWCC 1 cut(s) 315
BmgBI CACGTC 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 315
BmtI GCTAGC 1 cut(s) 110
Bpu10I CCTNAGC 1 cut(s) 101
BsaJI CCNNGG 1 cut(s) 13
Bse1I ACTGG 2 cut(s) 51, 256
Bse21I CCTNAGG 1 cut(s) 349
BseDI CCNNGG 1 cut(s) 13
BseMII CTCAG 3 cut(s) 115, 315, 363
BseNI ACTGG 2 cut(s) 51, 256
BseRI GAGGAG 1 cut(s) 43
BseSI GKGCMC 1 cut(s) 10
BseXI GCAGC 1 cut(s) 68
BsgI GTGCAG 1 cut(s) 67
BshFI GGCC 2 cut(s) 50, 228
BsmAI GTCTC 1 cut(s) 158
BsmBI CGTCTC 1 cut(s) 158
BsnI GGCC 2 cut(s) 50, 228
Bsp1286I GDGCHC 1 cut(s) 10
BspACI CCGC 1 cut(s) 361
BspANI GGCC 2 cut(s) 50, 228
BspCNI CTCAG 3 cut(s) 114, 316, 362
BspOI GCTAGC 1 cut(s) 110
BspTI CTTAAG 1 cut(s) 283
BsrI ACTGG 2 cut(s) 51, 256
BssECI CCNNGG 1 cut(s) 13
BssT1I CCWWGG 1 cut(s) 13
Bst4CI ACNGT 1 cut(s) 280
BstAFI CTTAAG 1 cut(s) 283
BstC8I GCNNGC 3 cut(s) 108, 199, 230
BstDEI CTNAG 3 cut(s) 101, 324, 349
BstMAI GTCTC 1 cut(s) 158
BstMWI GCNNNNNNNGC 1 cut(s) 225
BstSFI CTRYAG 1 cut(s) 184
BstSLI GKGCMC 1 cut(s) 10
BstV1I GCAGC 1 cut(s) 68
Bsu36I CCTNAGG 1 cut(s) 349
BsuRI GGCC 2 cut(s) 50, 228
BtrI CACGTC 1 cut(s) 152
Cac8I GCNNGC 3 cut(s) 108, 199, 230
Cfr13I GGNCC 1 cut(s) 315
CviAII CATG 1 cut(s) 67
DdeI CTNAG 3 cut(s) 101, 324, 349
Eco130I CCWWGG 1 cut(s) 13
Eco147I AGGCCT 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 315
Eco81I CCTNAGG 1 cut(s) 349
EcoT14I CCWWGG 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 13
Esp3I CGTCTC 1 cut(s) 158
FaeI CATG 1 cut(s) 70
FaiI YATR 3 cut(s) 68, 186, 370
FatI CATG 1 cut(s) 66
FauI CCCGC 1 cut(s) 368
Fnu4HI GCNGC 1 cut(s) 82
Fsp4HI GCNGC 1 cut(s) 82
FspBI CTAG 2 cut(s) 107, 194
GluI GCNGC 1 cut(s) 82
HaeIII GGCC 2 cut(s) 50, 228
Hin1II CATG 1 cut(s) 70
HinfI GANTC 1 cut(s) 264
HphI GGTGA 4 cut(s) 21, 182, 259, 337
Hpy188I TCNGA 2 cut(s) 162, 325
HpyAV CCTTC 3 cut(s) 167, 253, 352
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4IV ACGT 1 cut(s) 151
HpyCH4V TGCA 1 cut(s) 84
HpyF10VI GCNNNNNNNGC 1 cut(s) 225
HpyF3I CTNAG 3 cut(s) 101, 324, 349
HpySE526I ACGT 1 cut(s) 151
Hsp92II CATG 1 cut(s) 70
Lsp1109I GCAGC 1 cut(s) 68
MaeI CTAG 2 cut(s) 107, 194
MaeII ACGT 1 cut(s) 151
MaeIII GTNAC 2 cut(s) 116, 188
MboII GAAGA 2 cut(s) 85, 205
MhlI GDGCHC 1 cut(s) 10
MluCI AATT 1 cut(s) 292
MnlI CCTC 7 cut(s) 61, 64, 70, 218, 280, 331, 358
MseI TTAA 4 cut(s) 248, 275, 284, 373
MspCI CTTAAG 1 cut(s) 283
MwoI GCNNNNNNNGC 1 cut(s) 225
NheI GCTAGC 1 cut(s) 106
NlaIII CATG 1 cut(s) 70
NmuCI GTSAC 1 cut(s) 188
PceI AGGCCT 1 cut(s) 228
PfeI GAWTC 1 cut(s) 264
PkrI GCNGC 1 cut(s) 83
PspPI GGNCC 1 cut(s) 315
SaqAI TTAA 4 cut(s) 248, 275, 284, 373
SatI GCNGC 1 cut(s) 82
Sau96I GGNCC 1 cut(s) 315
SduI GDGCHC 1 cut(s) 10
SfcI CTRYAG 1 cut(s) 184
SinI GGWCC 1 cut(s) 315
SmlI CTYRAG 1 cut(s) 283
SmoI CTYRAG 1 cut(s) 283
Sse9I AATT 1 cut(s) 292
SseBI AGGCCT 1 cut(s) 228
SsiI CCGC 1 cut(s) 361
SspMI CTAG 2 cut(s) 107, 194
StuI AGGCCT 1 cut(s) 228
StyI CCWWGG 1 cut(s) 13
TaaI ACNGT 1 cut(s) 280
TaiI ACGT 1 cut(s) 154
TaqI TCGA 1 cut(s) 56
TasI AATT 1 cut(s) 292
TfiI GAWTC 1 cut(s) 264
Tru1I TTAA 4 cut(s) 248, 275, 284, 373
Tru9I TTAA 4 cut(s) 248, 275, 284, 373
TseFI GTSAC 1 cut(s) 188
TseI GCWGC 1 cut(s) 81
Tsp45I GTSAC 1 cut(s) 188
Vha464I CTTAAG 1 cut(s) 283
VpaK11BI GGWCC 1 cut(s) 315
XspI CTAG 2 cut(s) 107, 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.