Rroxscaffold_2G00108580

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000135
Physical Location & Seq
Forward (+)
32643788 .. 32644777
990 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00108580.1

Sequence Viewer

Length: 990 bp
ATGGAAACTAAATCCTGCAAGCAGCTTGACATCTTTTTCTTTCCATACATGGCTCAAGGCCACAGCATACCCCTTGCAAATATAGCCAAACTATTTTCCTCTCATGGTGTCGAATCCACCATAATAACCACTCCACTCAATGCACCATTCTTTTCCAAAGCAACTCAAAGAACCAAAAGTTCGGAGTTTGATCATGAAATTGAACTTGTTCTCATCAAGTTCCCATCTGTCGAAGTTGGGTTGCCACGAGAATGTGAGAAGGCTGAGTTAGTTACAACACCAGAGATGGAAAGAAAGTTCTTCATTGCCGCCAGTTTGCTTGAACCACAGCTCGAGCAAATTTTAGACAAACATCGTCCTCATTGTCTTGTTGTTGATGCTTTCTTTCCTTTTGCTACAGATGTAGCTGCTAAGTTTGGAATTCTAAGGCTATATTTTCATGGAACTGGTTTCTTCCCTTTGTGTGCTTCATTGAGTGTGATGATATATCAAACTAACAGGAAGTTGTCAACTGACTCAGAATCTTTCGTGATTCCTAATCTCCCAGATGAAATCAAGATAACAAGAAACCAAATCCCAAATTTTTTTAAGCTAGATGCTGAAGCAGGATTCACCAAGTTCTTCAAAGCAGCCATAGAAAGTGAGGAAAGGAGCTATGGGGTCATTGTTAACAGCTTTTATGAACTTGAACCAGTTTATGCAGATCATTACAGGAAGGCGTTTGGGAGGAAGGCATGGCATATTGGCCCGGTTTCATTATGCAACAAGCCAACAGATAAAGCAGAGAAGGGACCGGAAGCCTCTGTTGATGAACACCAGTGCTTGAAATGGCTAAACTCTAAGAAACCCAACTCTGTGGTTTATATATGTTTCGGAAGCATGATCAATTTTGCTAATTGTCAGCTCCTAGAAATTGCAGTTGGTCTTGAGGCTTCTGGACAAGACTTCATTTGGGTTGTCAAGAAAGAAAAGAAAGAAAGAAAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

329

Amino Acids

37.35

Weight (kDa)

7.1

Isoelectric Point (pI)

36.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000135)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15480 AT2G15480 AT2G15490 AT2G15490 AT2G15490 AT4G34131 AT4G34135 AT4G34135 AT4G34138
fragaria_vesca FvH4_2g05600 FvH4_2g05601 FvH4_2g05602 FvH4_2g05603 FvH4_2g05604 FvH4_2g05630 FvH4_2g05660 FvH4_2g05662 FvH4_2g05663 FvH4_2g05671 FvH4_2g05680 FvH4_3g09760 FvH4_3g09780 FvH4_7g23180
malus_domestica MD00G1046200.v1.1 MD04G1214200.v1.1 MD05G1085700.v1.1 MD05G1085800.v1.1 MD05G1086200.v1.1 MD05G1086300.v1.1 MD05G1091500.v1.1 MD07G1007400.v1.1 MD07G1007500.v1.1 MD07G1007600.v1.1 MD17G1100000.v1.1 MD17G1100300.v1.1
prunus_persica Prupe.8G129800_v2.0.a1 Prupe.8G130100_v2.0.a1 Prupe.8G130200_v2.0.a1 Prupe.8G130300_v2.0.a1 Prupe.8G130400_v2.0.a1 Prupe.8G130500_v2.0.a1 Prupe.8G130600_v2.0.a1 Prupe.8G130700_v2.0.a1 Prupe.8G130800_v2.0.a1 Prupe.8G130900_v2.0.a1 Prupe.8G131000_v2.0.a1 Prupe.8G131000_v2.0.a1
pyrus_communis pycom05g08530 pycom05g08560 pycom07g00600 pycom07g00610 pycom07g00620 pycom17g09520 pycom2675g00060
rosa_chinensis RchiOBHm_Chr2g0111601 RchiOBHm_Chr2g0125751 RchiOBHm_Chr6g0248631 RchiOBHm_Chr6g0248721 RchiOBHm_Chr6g0255881 RchiOBHm_Chr6g0255911 RchiOBHm_Chr6g0255931 RchiOBHm_Chr6g0256041 RchiOBHm_Chr6g0256061 RchiOBHm_Chr6g0256081 RchiOBHm_Chr6g0256121 RchiOBHm_Chr6g0256131 RchiOBHm_Chr6g0256151 RchiOBHm_Chr6g0256161 RchiOBHm_Chr6g0256211 RchiOBHm_Chr6g0256221 RchiOBHm_Chr6g0256241 RchiOBHm_Chr6g0256251 RchiOBHm_Chr6g0256311 RchiOBHm_Chr6g0256331 RchiOBHm_Chr6g0256351 RchiOBHm_Chr6g0256361 RchiOBHm_Chr6g0256371 RchiOBHm_Chr6g0256411 RchiOBHm_Chr6g0256421 RchiOBHm_Chr6g0256431 RchiOBHm_Chr6g0256461 RchiOBHm_Chr6g0256471 RchiOBHm_Chr6g0256501 RchiOBHm_Chr6g0256511 RchiOBHm_Chr6g0256521 RchiOBHm_Chr6g0256531 RchiOBHm_Chr6g0256611 RchiOBHm_Chr6g0257761 RchiOBHm_Chr6g0276931
rosa_laevigata RLG00000014720 RLG00000014721 RLG00000014763 RLG00000014766 RLG00000014768 RLG00000014769 RLG00000014770 RLG00000014774 RLG00000014776 RLG00000014777 RLG00000014778 RLG00000014781 RLG00000014782 RLG00000014783 RLG00000014786 RLG00000014787 RLG00000014788 RLG00000014789 RLG00000014790 RLG00000014791 RLG00000014793 RLG00000014795 RLG00000014799 RLG00000014800 RLG00000014803 RLG00000014805 RLG00000015130 RLG00000015139
rosa_multiflora Rmu_co8160604.1_g000001 Rmu_sc0001598.1_g000016 Rmu_sc0001598.1_g000018 Rmu_sc0001598.1_g000024 Rmu_sc0001738.1_g000012 Rmu_sc0001738.1_g000013 Rmu_sc0001896.1_g000025 Rmu_sc0001896.1_g000029 Rmu_sc0001896.1_g000037 Rmu_sc0001896.1_g000039 Rmu_sc0002393.1_g000006 Rmu_sc0002553.1_g000039 Rmu_sc0004414.1_g000007 Rmu_sc0005080.1_g000001 Rmu_sc0005080.1_g000002 Rmu_sc0005080.1_g000003 Rmu_sc0005080.1_g000006 Rmu_sc0005080.1_g000007 Rmu_sc0005080.1_g000008 Rmu_sc0005080.1_g000010 Rmu_sc0005080.1_g000011 Rmu_sc0005080.1_g000012 Rmu_sc0008707.1_g000001 Rmu_sc0008707.1_g000003 Rmu_sc0008832.1_g000002 Rmu_sc0010826.1_g000012 Rmu_sc0011315.1_g000009 Rmu_sc0019708.1_g000001
rosa_roxburghii Rroxscaffold_2G00108580 Rroxscaffold_7G00208920 Rroxscaffold_7G00209240 Rroxscaffold_7G00209250 Rroxscaffold_7G00209260 Rroxscaffold_7G00209270 Rroxscaffold_7G00209360 Rroxscaffold_7G00209380 Rroxscaffold_7G00209390 Rroxscaffold_7G00209430 Rroxscaffold_7G00209440 Rroxscaffold_7G00209510 Rroxscaffold_7G00209540
rosa_rugosa Rorug05G0532600 Rorug05G0562400 Rorug05G0562500 Rorug05G0563000 Rorug05G0563100 Rorug05G0563300 Rorug05G0563300 Rorug05G0563600 Rorug05G0563700 Rorug05G0563800 Rorug05G0564000 Rorug05G0564100 Rorug05G0564200 Rorug05G0564300 Rorug05G0564400 Rorug05G0564500 Rorug05G0564600 Rorug05G0564600 Rorug05G0568600 Rorug05G0568700
rosa_wichuraiana Rw6G004280 Rw6G004380 Rw6G006940 Rw6G006950 Rw6G006960 Rw6G007000 Rw6G007090 Rw6G007100 Rw6G007110 Rw6G007150 Rw6G007160 Rw6G007170 Rw6G007200 Rw6G007210 Rw6G007240 Rw6G007250 Rw6G007280 Rw6G007290 Rw6G007300 Rw6G007310 Rw6G007320 Rw6G007340 Rw6G007350 Rw6G007360 Rw6G007380 Rw6G007660 Rw6G018660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 309
AcsI RAATTY 3 cut(s) 339, 420, 580
AcuI CTGAAG 1 cut(s) 621
AgsI TTSAA 5 cut(s) 203, 323, 625, 689, 826
AjuI GAANNNNNNNTTGG 2 cut(s) 903, 935
AloI GAACNNNNNNTCC 2 cut(s) 281, 313
AluBI AGCT 7 cut(s) 25, 331, 407, 592, 654, 675, 904
AluI AGCT 7 cut(s) 25, 331, 407, 592, 654, 675, 904
Ama87I CYCGRG 1 cut(s) 332
AoxI GGCC 2 cut(s) 58, 745
ApeKI GCWGC 3 cut(s) 22, 407, 629
ApoI RAATTY 3 cut(s) 339, 420, 580
Asp700I GAANNNNTTC 1 cut(s) 207
AspS9I GGNCC 2 cut(s) 746, 791
AsuC2I CCSGG 1 cut(s) 749
AsuHPI GGTGA 1 cut(s) 604
AvaI CYCGRG 1 cut(s) 332
AvaII GGWCC 1 cut(s) 791
BauI CACGAG 1 cut(s) 246
BbvI GCAGC 3 cut(s) 34, 394, 641
BccI CCATC 2 cut(s) 232, 280
BclI TGATCA 2 cut(s) 190, 882
BcnI CCSGG 1 cut(s) 749
BfaI CTAG 2 cut(s) 593, 908
BfmI CTRYAG 1 cut(s) 396
BisI GCNGC 4 cut(s) 23, 309, 408, 630
BlsI GCNGC 4 cut(s) 24, 310, 409, 631
Bme1390I CCNGG 1 cut(s) 749
Bme18I GGWCC 1 cut(s) 791
BmeT110I CYCGRG 1 cut(s) 332
BmgT120I GGNCC 2 cut(s) 746, 791
BmiI GGNNCC 1 cut(s) 792
BmrFI CCNGG 1 cut(s) 749
BmsI GCATC 2 cut(s) 367, 586
BpuEI CTTGAG 2 cut(s) 39, 947
BpuMI CCSGG 1 cut(s) 749
BsaWI WCCGGW 1 cut(s) 793
Bse1I ACTGG 4 cut(s) 312, 451, 692, 817
Bse3DI GCAATG 1 cut(s) 303
BseMI GCAATG 1 cut(s) 303
BseMII CTCAG 2 cut(s) 255, 531
BseNI ACTGG 4 cut(s) 312, 451, 692, 817
BseXI GCAGC 3 cut(s) 34, 394, 641
BshFI GGCC 2 cut(s) 60, 747
BsiHKCI CYCGRG 1 cut(s) 332
BsiSI CCGG 2 cut(s) 749, 794
BslFI GGGAC 1 cut(s) 804
BsmFI GGGAC 1 cut(s) 804
BsnI GGCC 2 cut(s) 60, 747
BsoBI CYCGRG 1 cut(s) 332
Bsp143I GATC 3 cut(s) 190, 703, 882
BspACI CCGC 1 cut(s) 309
BspANI GGCC 2 cut(s) 60, 747
BspCNI CTCAG 2 cut(s) 256, 530
BspHI TCATGA 1 cut(s) 193
BspLI GGNNCC 1 cut(s) 792
BsrDI GCAATG 1 cut(s) 303
BsrI ACTGG 4 cut(s) 312, 451, 692, 817
BssMI GATC 3 cut(s) 190, 703, 882
BssSI CACGAG 1 cut(s) 246
Bst2BI CACGAG 1 cut(s) 246
BstC8I GCNNGC 1 cut(s) 20
BstDEI CTNAG 5 cut(s) 264, 411, 425, 517, 840
BstKTI GATC 3 cut(s) 193, 706, 885
BstMBI GATC 3 cut(s) 190, 703, 882
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstSCI CCNGG 1 cut(s) 747
BstSFI CTRYAG 1 cut(s) 396
BstV1I GCAGC 3 cut(s) 34, 394, 641
BstXI CCANNNNNNTGG 1 cut(s) 856
BsuRI GGCC 2 cut(s) 60, 747
BtsIMutI CAGTG 1 cut(s) 824
Cac8I GCNNGC 1 cut(s) 20
CciI TCATGA 1 cut(s) 193
Cfr13I GGNCC 2 cut(s) 746, 791
CviAII CATG 6 cut(s) 49, 104, 194, 440, 735, 880
DdeI CTNAG 5 cut(s) 264, 411, 425, 517, 840
DpnI GATC 3 cut(s) 192, 705, 884
DpnII GATC 3 cut(s) 190, 703, 882
Eco47I GGWCC 1 cut(s) 791
Eco57I CTGAAG 1 cut(s) 621
Eco88I CYCGRG 1 cut(s) 332
EcoRI GAATTC 1 cut(s) 420
FaeI CATG 6 cut(s) 52, 107, 197, 443, 738, 883
FaqI GGGAC 1 cut(s) 804
FatI CATG 6 cut(s) 48, 103, 193, 439, 734, 879
FbaI TGATCA 2 cut(s) 190, 882
Fnu4HI GCNGC 4 cut(s) 23, 309, 408, 630
Fsp4HI GCNGC 4 cut(s) 23, 309, 408, 630
FspBI CTAG 2 cut(s) 593, 908
GluI GCNGC 4 cut(s) 23, 309, 408, 630
HaeIII GGCC 2 cut(s) 60, 747
HapII CCGG 2 cut(s) 749, 794
Hin1II CATG 6 cut(s) 52, 107, 197, 443, 738, 883
HincII GTYRAC 2 cut(s) 510, 670
HindII GTYRAC 2 cut(s) 510, 670
HinfI GANTC 5 cut(s) 113, 515, 521, 532, 609
HpaI GTTAAC 1 cut(s) 670
HpaII CCGG 2 cut(s) 749, 794
HphI GGTGA 1 cut(s) 604
Hpy166II GTNNAC 2 cut(s) 510, 670
Hpy188I TCNGA 3 cut(s) 184, 520, 875
Hpy188III TCNNGA 6 cut(s) 194, 529, 556, 926, 936, 961
Hpy8I GTNNAC 2 cut(s) 510, 670
HpyAV CCTTC 4 cut(s) 253, 709, 724, 781
HpyCH4V TGCA 6 cut(s) 18, 77, 143, 701, 762, 917
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpyF3I CTNAG 5 cut(s) 264, 411, 425, 517, 840
Hsp92II CATG 6 cut(s) 52, 107, 197, 443, 738, 883
Ksp22I TGATCA 2 cut(s) 190, 882
KspAI GTTAAC 1 cut(s) 670
Kzo9I GATC 3 cut(s) 190, 703, 882
LmnI GCTCC 2 cut(s) 651, 909
Lsp1109I GCAGC 3 cut(s) 34, 394, 641
LweI GCATC 2 cut(s) 367, 586
MaeI CTAG 2 cut(s) 593, 908
MaeIII GTNAC 1 cut(s) 271
MalI GATC 3 cut(s) 192, 705, 884
MboI GATC 3 cut(s) 190, 703, 882
MboII GAAGA 3 cut(s) 292, 445, 613
MluCI AATT 7 cut(s) 198, 339, 420, 580, 886, 895, 912
MlyI GAGTC 1 cut(s) 509
MnlI CCTC 6 cut(s) 109, 369, 637, 720, 811, 922
MroXI GAANNNNTTC 1 cut(s) 207
MseI TTAA 2 cut(s) 588, 669
MslI CAYNNNNRTG 1 cut(s) 250
MspI CCGG 2 cut(s) 749, 794
MspR9I CCNGG 1 cut(s) 749
MwoI GCNNNNNNNGC 1 cut(s) 83
NciI CCSGG 1 cut(s) 749
NdeII GATC 3 cut(s) 190, 703, 882
NlaIII CATG 6 cut(s) 52, 107, 197, 443, 738, 883
NlaIV GGNNCC 1 cut(s) 792
PaeR7I CTCGAG 1 cut(s) 332
PagI TCATGA 1 cut(s) 193
PdmI GAANNNNTTC 1 cut(s) 207
PfeI GAWTC 4 cut(s) 113, 521, 532, 609
PkrI GCNGC 4 cut(s) 24, 310, 409, 631
PleI GAGTC 1 cut(s) 509
PpsI GAGTC 1 cut(s) 509
PspN4I GGNNCC 1 cut(s) 792
PspPI GGNCC 2 cut(s) 746, 791
PspXI VCTCGAGB 1 cut(s) 332
RseI CAYNNNNRTG 1 cut(s) 250
SaqAI TTAA 2 cut(s) 588, 669
SatI GCNGC 4 cut(s) 23, 309, 408, 630
Sau3AI GATC 3 cut(s) 190, 703, 882
Sau96I GGNCC 2 cut(s) 746, 791
SchI GAGTC 1 cut(s) 509
ScrFI CCNGG 1 cut(s) 749
SetI ASST 7 cut(s) 27, 333, 409, 594, 656, 677, 906
SfaNI GCATC 2 cut(s) 367, 586
SfcI CTRYAG 1 cut(s) 396
Sfr274I CTCGAG 1 cut(s) 332
SinI GGWCC 1 cut(s) 791
SlaI CTCGAG 1 cut(s) 332
SmiMI CAYNNNNRTG 1 cut(s) 250
SmlI CTYRAG 3 cut(s) 54, 332, 926
SmoI CTYRAG 3 cut(s) 54, 332, 926
Sse9I AATT 7 cut(s) 198, 339, 420, 580, 886, 895, 912
SsiI CCGC 1 cut(s) 309
SspMI CTAG 2 cut(s) 593, 908
StyD4I CCNGG 1 cut(s) 747
TaqI TCGA 3 cut(s) 111, 231, 333
TasI AATT 7 cut(s) 198, 339, 420, 580, 886, 895, 912
TauI GCSGC 1 cut(s) 311
TfiI GAWTC 4 cut(s) 113, 521, 532, 609
Tru1I TTAA 2 cut(s) 588, 669
Tru9I TTAA 2 cut(s) 588, 669
TscAI CASTG 1 cut(s) 824
TseI GCWGC 3 cut(s) 22, 407, 629
TspDTI ATGAA 9 cut(s) 210, 292, 428, 459, 564, 696, 744, 825, 937
TspRI CASTG 1 cut(s) 824
VpaK11BI GGWCC 1 cut(s) 791
XapI RAATTY 3 cut(s) 339, 420, 580
XhoI CTCGAG 1 cut(s) 332
XmnI GAANNNNTTC 1 cut(s) 207
XspI CTAG 2 cut(s) 593, 908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.