Rmu_co8160604.1_g000001

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8160604.1
Physical Location & Seq
Reverse (-)
2 .. 443
442 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8160604.1_g000001.1.cds

Sequence Viewer

Length: 442 bp
atgggtagccaaagccatgactctgttcacatattgttgttccctttcatggctcaaggccacatgatcccagtctccgacatggccaaggtctttgcttcacatggagtcaagatcaccatagtcaccacccctcaaaacgccatcagattcgcccaaacgacccaatcgaggaaacactcttctgggttcgacatacatgtcaaggccatcaagttcccaagtgaagaggctggtctgccgaaaggtttcgagactgtcgactcattaccccagccggaattagtcaacaagttcttcatagccacacgcttgcttcaagcaccgctcgaggaggttctcaacgagttcaaaccaacttgccttgtagctgacatattctatccttgggctactgaagccgctgcgaaattcggtattccgaggttggtttttcatggga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

147

Amino Acids

16.26

Weight (kDa)

7.06

Isoelectric Point (pI)

49.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000135)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15480 AT2G15480 AT2G15490 AT2G15490 AT2G15490 AT4G34131 AT4G34135 AT4G34135 AT4G34138
fragaria_vesca FvH4_2g05600 FvH4_2g05601 FvH4_2g05602 FvH4_2g05603 FvH4_2g05604 FvH4_2g05630 FvH4_2g05660 FvH4_2g05662 FvH4_2g05663 FvH4_2g05671 FvH4_2g05680 FvH4_3g09760 FvH4_3g09780 FvH4_7g23180
malus_domestica MD00G1046200.v1.1 MD04G1214200.v1.1 MD05G1085700.v1.1 MD05G1085800.v1.1 MD05G1086200.v1.1 MD05G1086300.v1.1 MD05G1091500.v1.1 MD07G1007400.v1.1 MD07G1007500.v1.1 MD07G1007600.v1.1 MD17G1100000.v1.1 MD17G1100300.v1.1
prunus_persica Prupe.8G129800_v2.0.a1 Prupe.8G130100_v2.0.a1 Prupe.8G130200_v2.0.a1 Prupe.8G130300_v2.0.a1 Prupe.8G130400_v2.0.a1 Prupe.8G130500_v2.0.a1 Prupe.8G130600_v2.0.a1 Prupe.8G130700_v2.0.a1 Prupe.8G130800_v2.0.a1 Prupe.8G130900_v2.0.a1 Prupe.8G131000_v2.0.a1 Prupe.8G131000_v2.0.a1
pyrus_communis pycom05g08530 pycom05g08560 pycom07g00600 pycom07g00610 pycom07g00620 pycom17g09520 pycom2675g00060
rosa_chinensis RchiOBHm_Chr2g0111601 RchiOBHm_Chr2g0125751 RchiOBHm_Chr6g0248631 RchiOBHm_Chr6g0248721 RchiOBHm_Chr6g0255881 RchiOBHm_Chr6g0255911 RchiOBHm_Chr6g0255931 RchiOBHm_Chr6g0256041 RchiOBHm_Chr6g0256061 RchiOBHm_Chr6g0256081 RchiOBHm_Chr6g0256121 RchiOBHm_Chr6g0256131 RchiOBHm_Chr6g0256151 RchiOBHm_Chr6g0256161 RchiOBHm_Chr6g0256211 RchiOBHm_Chr6g0256221 RchiOBHm_Chr6g0256241 RchiOBHm_Chr6g0256251 RchiOBHm_Chr6g0256311 RchiOBHm_Chr6g0256331 RchiOBHm_Chr6g0256351 RchiOBHm_Chr6g0256361 RchiOBHm_Chr6g0256371 RchiOBHm_Chr6g0256411 RchiOBHm_Chr6g0256421 RchiOBHm_Chr6g0256431 RchiOBHm_Chr6g0256461 RchiOBHm_Chr6g0256471 RchiOBHm_Chr6g0256501 RchiOBHm_Chr6g0256511 RchiOBHm_Chr6g0256521 RchiOBHm_Chr6g0256531 RchiOBHm_Chr6g0256611 RchiOBHm_Chr6g0257761 RchiOBHm_Chr6g0276931
rosa_laevigata RLG00000014720 RLG00000014721 RLG00000014763 RLG00000014766 RLG00000014768 RLG00000014769 RLG00000014770 RLG00000014774 RLG00000014776 RLG00000014777 RLG00000014778 RLG00000014781 RLG00000014782 RLG00000014783 RLG00000014786 RLG00000014787 RLG00000014788 RLG00000014789 RLG00000014790 RLG00000014791 RLG00000014793 RLG00000014795 RLG00000014799 RLG00000014800 RLG00000014803 RLG00000014805 RLG00000015130 RLG00000015139
rosa_multiflora Rmu_co8160604.1_g000001 Rmu_sc0001598.1_g000016 Rmu_sc0001598.1_g000018 Rmu_sc0001598.1_g000024 Rmu_sc0001738.1_g000012 Rmu_sc0001738.1_g000013 Rmu_sc0001896.1_g000025 Rmu_sc0001896.1_g000029 Rmu_sc0001896.1_g000037 Rmu_sc0001896.1_g000039 Rmu_sc0002393.1_g000006 Rmu_sc0002553.1_g000039 Rmu_sc0004414.1_g000007 Rmu_sc0005080.1_g000001 Rmu_sc0005080.1_g000002 Rmu_sc0005080.1_g000003 Rmu_sc0005080.1_g000006 Rmu_sc0005080.1_g000007 Rmu_sc0005080.1_g000008 Rmu_sc0005080.1_g000010 Rmu_sc0005080.1_g000011 Rmu_sc0005080.1_g000012 Rmu_sc0008707.1_g000001 Rmu_sc0008707.1_g000003 Rmu_sc0008832.1_g000002 Rmu_sc0010826.1_g000012 Rmu_sc0011315.1_g000009 Rmu_sc0019708.1_g000001
rosa_roxburghii Rroxscaffold_2G00108580 Rroxscaffold_7G00208920 Rroxscaffold_7G00209240 Rroxscaffold_7G00209250 Rroxscaffold_7G00209260 Rroxscaffold_7G00209270 Rroxscaffold_7G00209360 Rroxscaffold_7G00209380 Rroxscaffold_7G00209390 Rroxscaffold_7G00209430 Rroxscaffold_7G00209440 Rroxscaffold_7G00209510 Rroxscaffold_7G00209540
rosa_rugosa Rorug05G0532600 Rorug05G0562400 Rorug05G0562500 Rorug05G0563000 Rorug05G0563100 Rorug05G0563300 Rorug05G0563300 Rorug05G0563600 Rorug05G0563700 Rorug05G0563800 Rorug05G0564000 Rorug05G0564100 Rorug05G0564200 Rorug05G0564300 Rorug05G0564400 Rorug05G0564500 Rorug05G0564600 Rorug05G0564600 Rorug05G0568600 Rorug05G0568700
rosa_wichuraiana Rw6G004280 Rw6G004380 Rw6G006940 Rw6G006950 Rw6G006960 Rw6G007000 Rw6G007090 Rw6G007100 Rw6G007110 Rw6G007150 Rw6G007160 Rw6G007170 Rw6G007200 Rw6G007210 Rw6G007240 Rw6G007250 Rw6G007280 Rw6G007290 Rw6G007300 Rw6G007310 Rw6G007320 Rw6G007340 Rw6G007350 Rw6G007360 Rw6G007380 Rw6G007660 Rw6G018660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 200
AccBSI CCGCTC 1 cut(s) 328
AccI GTMKAC 1 cut(s) 261
AciI CCGC 2 cut(s) 326, 402
AclWI GGATC 1 cut(s) 61
AcoI YGGCCR 1 cut(s) 84
AcsI RAATTY 1 cut(s) 410
AcuI CTGAAG 1 cut(s) 417
AfiI CCNNNNNNNGG 2 cut(s) 49, 171
AflIII ACRYGT 1 cut(s) 199
AgsI TTSAA 2 cut(s) 320, 352
AluBI AGCT 1 cut(s) 371
AluI AGCT 1 cut(s) 371
Alw26I GTCTC 2 cut(s) 79, 248
AlwI GGATC 1 cut(s) 61
Ama87I CYCGRG 1 cut(s) 329
AoxI GGCC 3 cut(s) 58, 84, 207
ApeKI GCWGC 1 cut(s) 404
ApoI RAATTY 1 cut(s) 410
Asp700I GAANNNNTTC 1 cut(s) 248
AsuHPI GGTGA 2 cut(s) 109, 118
AvaI CYCGRG 1 cut(s) 329
BalI TGGCCA 1 cut(s) 86
BbvI GCAGC 1 cut(s) 391
BccI CCATC 2 cut(s) 152, 218
BcoDI GTCTC 2 cut(s) 79, 248
BisI GCNGC 2 cut(s) 402, 405
BlsI GCNGC 2 cut(s) 403, 406
BmeT110I CYCGRG 1 cut(s) 329
BmrI ACTGGG 1 cut(s) 65
BmuI ACTGGG 1 cut(s) 65
BpuEI CTTGAG 1 cut(s) 39
BsaJI CCNNGG 3 cut(s) 87, 386, 422
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 171
Bse1I ACTGG 1 cut(s) 71
BseDI CCNNGG 3 cut(s) 87, 386, 422
BseLI CCNNNNNNNGG 2 cut(s) 49, 171
BseNI ACTGG 1 cut(s) 71
BseRI GAGGAG 1 cut(s) 347
BseXI GCAGC 1 cut(s) 391
BseYI CCCAGC 1 cut(s) 273
BshFI GGCC 3 cut(s) 60, 86, 209
BsiHKCI CYCGRG 1 cut(s) 329
BsiSI CCGG 1 cut(s) 278
BslI CCNNNNNNNGG 2 cut(s) 49, 171
BsmAI GTCTC 2 cut(s) 79, 248
BsnI GGCC 3 cut(s) 60, 86, 209
BsoBI CYCGRG 1 cut(s) 329
Bsp143I GATC 2 cut(s) 66, 114
BspACI CCGC 2 cut(s) 326, 402
BspANI GGCC 3 cut(s) 60, 86, 209
BspPI GGATC 1 cut(s) 61
BsrBI CCGCTC 1 cut(s) 328
BsrI ACTGG 1 cut(s) 71
BssECI CCNNGG 3 cut(s) 87, 386, 422
BssMI GATC 2 cut(s) 66, 114
BssT1I CCWWGG 2 cut(s) 87, 386
Bst4CI ACNGT 1 cut(s) 259
Bst6I CTCTTC 2 cut(s) 187, 222
BstC8I GCNNGC 1 cut(s) 314
BstKTI GATC 2 cut(s) 69, 117
BstMAI GTCTC 2 cut(s) 79, 248
BstMBI GATC 2 cut(s) 66, 114
BstMWI GCNNNNNNNGC 1 cut(s) 398
BstNSI RCATGY 1 cut(s) 203
BstV1I GCAGC 1 cut(s) 391
BsuRI GGCC 3 cut(s) 60, 86, 209
Cac8I GCNNGC 1 cut(s) 314
CviAII CATG 7 cut(s) 17, 49, 64, 82, 104, 200, 437
DpnI GATC 2 cut(s) 68, 116
DpnII GATC 2 cut(s) 66, 114
DrdI GACNNNNNNGTC 1 cut(s) 200
DseDI GACNNNNNNGTC 1 cut(s) 200
EaeI YGGCCR 1 cut(s) 84
Eam1104I CTCTTC 2 cut(s) 187, 222
EarI CTCTTC 2 cut(s) 187, 222
Eco130I CCWWGG 2 cut(s) 87, 386
Eco57I CTGAAG 1 cut(s) 417
Eco88I CYCGRG 1 cut(s) 329
EcoT14I CCWWGG 2 cut(s) 87, 386
ErhI CCWWGG 2 cut(s) 87, 386
FaeI CATG 7 cut(s) 20, 52, 67, 85, 107, 203, 440
FatI CATG 7 cut(s) 16, 48, 63, 81, 103, 199, 436
FblI GTMKAC 1 cut(s) 261
Fnu4HI GCNGC 2 cut(s) 402, 405
Fsp4HI GCNGC 2 cut(s) 402, 405
GluI GCNGC 2 cut(s) 402, 405
GsaI CCCAGC 1 cut(s) 277
HaeIII GGCC 3 cut(s) 60, 86, 209
HapII CCGG 1 cut(s) 278
Hin1II CATG 7 cut(s) 20, 52, 67, 85, 107, 203, 440
HincII GTYRAC 2 cut(s) 262, 289
HindII GTYRAC 2 cut(s) 262, 289
HinfI GANTC 4 cut(s) 20, 108, 150, 263
HpaII CCGG 1 cut(s) 278
HphI GGTGA 2 cut(s) 109, 118
Hpy166II GTNNAC 3 cut(s) 28, 262, 289
Hpy188I TCNGA 3 cut(s) 79, 149, 423
Hpy188III TCNNGA 2 cut(s) 112, 253
Hpy8I GTNNAC 3 cut(s) 28, 262, 289
HpyCH4III ACNGT 1 cut(s) 259
HpyF10VI GCNNNNNNNGC 1 cut(s) 398
Hsp92II CATG 7 cut(s) 20, 52, 67, 85, 107, 203, 440
Kzo9I GATC 2 cut(s) 66, 114
LpnPI CCDG 5 cut(s) 84, 171, 219, 287, 291
Lsp1109I GCAGC 1 cut(s) 391
MaeIII GTNAC 1 cut(s) 124
MalI GATC 2 cut(s) 68, 116
MbiI CCGCTC 1 cut(s) 328
MboI GATC 2 cut(s) 66, 114
MboII GAAGA 3 cut(s) 174, 239, 289
MlsI TGGCCA 1 cut(s) 86
MluCI AATT 2 cut(s) 281, 410
MluNI TGGCCA 1 cut(s) 86
MlyI GAGTC 3 cut(s) 14, 117, 257
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 6 cut(s) 144, 165, 223, 325, 328, 417
Mox20I TGGCCA 1 cut(s) 86
MroXI GAANNNNTTC 1 cut(s) 248
MscI TGGCCA 1 cut(s) 86
Msp20I TGGCCA 1 cut(s) 86
MspA1I CMGCKG 1 cut(s) 404
MspI CCGG 1 cut(s) 278
MwoI GCNNNNNNNGC 1 cut(s) 398
NdeII GATC 2 cut(s) 66, 114
NlaIII CATG 7 cut(s) 20, 52, 67, 85, 107, 203, 440
NmuCI GTSAC 1 cut(s) 124
NspI RCATGY 1 cut(s) 203
PaeR7I CTCGAG 1 cut(s) 329
PciI ACATGT 1 cut(s) 199
PcsI WCGNNNNNNNCGW 2 cut(s) 167, 258
PdmI GAANNNNTTC 1 cut(s) 248
PfeI GAWTC 1 cut(s) 150
PkrI GCNGC 2 cut(s) 403, 406
PleI GAGTC 3 cut(s) 14, 116, 257
PpsI GAGTC 3 cut(s) 14, 116, 257
PscI ACATGT 1 cut(s) 199
PspFI CCCAGC 1 cut(s) 273
PspXI VCTCGAGB 1 cut(s) 329
SalI GTCGAC 1 cut(s) 260
SatI GCNGC 2 cut(s) 402, 405
Sau3AI GATC 2 cut(s) 66, 114
SchI GAGTC 3 cut(s) 14, 117, 257
SetI ASST 5 cut(s) 93, 250, 339, 373, 428
Sfr274I CTCGAG 1 cut(s) 329
SlaI CTCGAG 1 cut(s) 329
SmlI CTYRAG 2 cut(s) 54, 329
SmoI CTYRAG 2 cut(s) 54, 329
Sse9I AATT 2 cut(s) 281, 410
SsiI CCGC 2 cut(s) 326, 402
StyI CCWWGG 2 cut(s) 87, 386
TaaI ACNGT 1 cut(s) 259
TaqI TCGA 5 cut(s) 170, 192, 252, 261, 330
TasI AATT 2 cut(s) 281, 410
TauI GCSGC 1 cut(s) 404
TfiI GAWTC 1 cut(s) 150
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 1 cut(s) 404
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 3 cut(s) 37, 289, 425
XapI RAATTY 1 cut(s) 410
XceI RCATGY 1 cut(s) 203
XhoI CTCGAG 1 cut(s) 329
XmiI GTMKAC 1 cut(s) 261
XmnI GAANNNNTTC 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.