Rmu_sc0001896.1_g000029

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001896.1
Physical Location & Seq
Forward (+)
84423 .. 85040
618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001896.1_g000029.1.cds

Sequence Viewer

Length: 618 bp
atggaaaccgagtcccttcaacagctttatattttctttcttcctttcatggctcgtggccacagcatacccattatagacatagccaaactattttctgctcgtggggcaagatgcaccatagtaaccactcccctaaatgcaccactcttctccaaagcaacccaaagaggtgaagtcaaacttgttctcattaaattcccctctactgaagctgggttgcctcaagactgcgaagatcccgacttgattacaacacaagacatggtggaaaaatttatcaaagccacctatttacttgaaccacagcttgagcaggttttagacgaacatcgtcctcattgccttgttgctgatggtttctttccttgggctacagatgtggccgccaagtttggaattccaaggctgtatttccatggaatcggtttcttcccattgtgcgcttcactgagtgtgatgatgtatcaacctcacacgaagttgtcgtctgattcagaatcttatgtcattcctaatctccctgatgagatcaagatgaatagaagccaattaccagtttttcccaatctagatggtgagtcagaattcttgaacatgctcaaagcatcctgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

205

Amino Acids

23.06

Weight (kDa)

5.2

Isoelectric Point (pI)

39.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000135)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15480 AT2G15480 AT2G15490 AT2G15490 AT2G15490 AT4G34131 AT4G34135 AT4G34135 AT4G34138
fragaria_vesca FvH4_2g05600 FvH4_2g05601 FvH4_2g05602 FvH4_2g05603 FvH4_2g05604 FvH4_2g05630 FvH4_2g05660 FvH4_2g05662 FvH4_2g05663 FvH4_2g05671 FvH4_2g05680 FvH4_3g09760 FvH4_3g09780 FvH4_7g23180
malus_domestica MD00G1046200.v1.1 MD04G1214200.v1.1 MD05G1085700.v1.1 MD05G1085800.v1.1 MD05G1086200.v1.1 MD05G1086300.v1.1 MD05G1091500.v1.1 MD07G1007400.v1.1 MD07G1007500.v1.1 MD07G1007600.v1.1 MD17G1100000.v1.1 MD17G1100300.v1.1
prunus_persica Prupe.8G129800_v2.0.a1 Prupe.8G130100_v2.0.a1 Prupe.8G130200_v2.0.a1 Prupe.8G130300_v2.0.a1 Prupe.8G130400_v2.0.a1 Prupe.8G130500_v2.0.a1 Prupe.8G130600_v2.0.a1 Prupe.8G130700_v2.0.a1 Prupe.8G130800_v2.0.a1 Prupe.8G130900_v2.0.a1 Prupe.8G131000_v2.0.a1 Prupe.8G131000_v2.0.a1
pyrus_communis pycom05g08530 pycom05g08560 pycom07g00600 pycom07g00610 pycom07g00620 pycom17g09520 pycom2675g00060
rosa_chinensis RchiOBHm_Chr2g0111601 RchiOBHm_Chr2g0125751 RchiOBHm_Chr6g0248631 RchiOBHm_Chr6g0248721 RchiOBHm_Chr6g0255881 RchiOBHm_Chr6g0255911 RchiOBHm_Chr6g0255931 RchiOBHm_Chr6g0256041 RchiOBHm_Chr6g0256061 RchiOBHm_Chr6g0256081 RchiOBHm_Chr6g0256121 RchiOBHm_Chr6g0256131 RchiOBHm_Chr6g0256151 RchiOBHm_Chr6g0256161 RchiOBHm_Chr6g0256211 RchiOBHm_Chr6g0256221 RchiOBHm_Chr6g0256241 RchiOBHm_Chr6g0256251 RchiOBHm_Chr6g0256311 RchiOBHm_Chr6g0256331 RchiOBHm_Chr6g0256351 RchiOBHm_Chr6g0256361 RchiOBHm_Chr6g0256371 RchiOBHm_Chr6g0256411 RchiOBHm_Chr6g0256421 RchiOBHm_Chr6g0256431 RchiOBHm_Chr6g0256461 RchiOBHm_Chr6g0256471 RchiOBHm_Chr6g0256501 RchiOBHm_Chr6g0256511 RchiOBHm_Chr6g0256521 RchiOBHm_Chr6g0256531 RchiOBHm_Chr6g0256611 RchiOBHm_Chr6g0257761 RchiOBHm_Chr6g0276931
rosa_laevigata RLG00000014720 RLG00000014721 RLG00000014763 RLG00000014766 RLG00000014768 RLG00000014769 RLG00000014770 RLG00000014774 RLG00000014776 RLG00000014777 RLG00000014778 RLG00000014781 RLG00000014782 RLG00000014783 RLG00000014786 RLG00000014787 RLG00000014788 RLG00000014789 RLG00000014790 RLG00000014791 RLG00000014793 RLG00000014795 RLG00000014799 RLG00000014800 RLG00000014803 RLG00000014805 RLG00000015130 RLG00000015139
rosa_multiflora Rmu_co8160604.1_g000001 Rmu_sc0001598.1_g000016 Rmu_sc0001598.1_g000018 Rmu_sc0001598.1_g000024 Rmu_sc0001738.1_g000012 Rmu_sc0001738.1_g000013 Rmu_sc0001896.1_g000025 Rmu_sc0001896.1_g000029 Rmu_sc0001896.1_g000037 Rmu_sc0001896.1_g000039 Rmu_sc0002393.1_g000006 Rmu_sc0002553.1_g000039 Rmu_sc0004414.1_g000007 Rmu_sc0005080.1_g000001 Rmu_sc0005080.1_g000002 Rmu_sc0005080.1_g000003 Rmu_sc0005080.1_g000006 Rmu_sc0005080.1_g000007 Rmu_sc0005080.1_g000008 Rmu_sc0005080.1_g000010 Rmu_sc0005080.1_g000011 Rmu_sc0005080.1_g000012 Rmu_sc0008707.1_g000001 Rmu_sc0008707.1_g000003 Rmu_sc0008832.1_g000002 Rmu_sc0010826.1_g000012 Rmu_sc0011315.1_g000009 Rmu_sc0019708.1_g000001
rosa_roxburghii Rroxscaffold_2G00108580 Rroxscaffold_7G00208920 Rroxscaffold_7G00209240 Rroxscaffold_7G00209250 Rroxscaffold_7G00209260 Rroxscaffold_7G00209270 Rroxscaffold_7G00209360 Rroxscaffold_7G00209380 Rroxscaffold_7G00209390 Rroxscaffold_7G00209430 Rroxscaffold_7G00209440 Rroxscaffold_7G00209510 Rroxscaffold_7G00209540
rosa_rugosa Rorug05G0532600 Rorug05G0562400 Rorug05G0562500 Rorug05G0563000 Rorug05G0563100 Rorug05G0563300 Rorug05G0563300 Rorug05G0563600 Rorug05G0563700 Rorug05G0563800 Rorug05G0564000 Rorug05G0564100 Rorug05G0564200 Rorug05G0564300 Rorug05G0564400 Rorug05G0564500 Rorug05G0564600 Rorug05G0564600 Rorug05G0568600 Rorug05G0568700
rosa_wichuraiana Rw6G004280 Rw6G004380 Rw6G006940 Rw6G006950 Rw6G006960 Rw6G007000 Rw6G007090 Rw6G007100 Rw6G007110 Rw6G007150 Rw6G007160 Rw6G007170 Rw6G007200 Rw6G007210 Rw6G007240 Rw6G007250 Rw6G007280 Rw6G007290 Rw6G007300 Rw6G007310 Rw6G007320 Rw6G007340 Rw6G007350 Rw6G007360 Rw6G007380 Rw6G007660 Rw6G018660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 307
AciI CCGC 1 cut(s) 387
AclWI GGATC 1 cut(s) 233
AcoI YGGCCR 2 cut(s) 58, 384
AcsI RAATTY 4 cut(s) 197, 275, 399, 587
AcuI CTGAAG 1 cut(s) 231
AdeI CACNNNGTG 1 cut(s) 455
AgsI TTSAA 3 cut(s) 20, 302, 595
AluBI AGCT 3 cut(s) 25, 215, 310
AluI AGCT 3 cut(s) 25, 215, 310
AlwI GGATC 1 cut(s) 233
AoxI GGCC 2 cut(s) 58, 384
ApoI RAATTY 4 cut(s) 197, 275, 399, 587
ArsI GACNNNNNNTTYG 2 cut(s) 473, 505
AspLEI GCGC 1 cut(s) 446
AsuHPI GGTGA 2 cut(s) 185, 590
BalI TGGCCA 1 cut(s) 60
BauI CACGAG 2 cut(s) 54, 102
BccI CCATC 2 cut(s) 350, 569
BfaI CTAG 1 cut(s) 572
BfmI CTRYAG 1 cut(s) 375
BfuAI ACCTGC 1 cut(s) 307
BisI GCNGC 1 cut(s) 387
BlsI GCNGC 1 cut(s) 388
BmsI GCATC 1 cut(s) 104
BpuEI CTTGAG 2 cut(s) 210, 332
BsaJI CCNNGG 3 cut(s) 368, 404, 418
Bse1I ACTGG 1 cut(s) 557
Bse3DI GCAATG 1 cut(s) 340
BseDI CCNNGG 3 cut(s) 368, 404, 418
BseGI GGATG 1 cut(s) 608
BseMI GCAATG 1 cut(s) 340
BseMII CTCAG 1 cut(s) 443
BseNI ACTGG 1 cut(s) 557
BseYI CCCAGC 1 cut(s) 215
BshFI GGCC 2 cut(s) 60, 386
BsnI GGCC 2 cut(s) 60, 386
Bsp143I GATC 2 cut(s) 238, 531
Bsp19I CCATGG 1 cut(s) 418
BspACI CCGC 1 cut(s) 387
BspANI GGCC 2 cut(s) 60, 386
BspCNI CTCAG 1 cut(s) 444
BspMI ACCTGC 1 cut(s) 307
BspPI GGATC 1 cut(s) 233
BsrDI GCAATG 1 cut(s) 340
BsrI ACTGG 1 cut(s) 557
BssECI CCNNGG 3 cut(s) 368, 404, 418
BssMI GATC 2 cut(s) 238, 531
BssSI CACGAG 2 cut(s) 54, 102
BssT1I CCWWGG 3 cut(s) 368, 404, 418
Bst2BI CACGAG 2 cut(s) 54, 102
Bst6I CTCTTC 1 cut(s) 155
BstDEI CTNAG 1 cut(s) 452
BstDSI CCRYGG 1 cut(s) 418
BstF5I GGATG 1 cut(s) 608
BstHHI GCGC 1 cut(s) 446
BstKTI GATC 2 cut(s) 241, 534
BstMBI GATC 2 cut(s) 238, 531
BstMWI GCNNNNNNNGC 1 cut(s) 107
BstNSI RCATGY 1 cut(s) 601
BstSFI CTRYAG 1 cut(s) 375
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
BsuRI GGCC 2 cut(s) 60, 386
BtgI CCRYGG 1 cut(s) 418
BtsCI GGATG 1 cut(s) 608
BtsIMutI CAGTG 1 cut(s) 449
BveI ACCTGC 1 cut(s) 307
CfoI GCGC 1 cut(s) 446
CviAII CATG 4 cut(s) 49, 265, 419, 598
DdeI CTNAG 1 cut(s) 452
DpnI GATC 2 cut(s) 240, 533
DpnII GATC 2 cut(s) 238, 531
DraIII CACNNNGTG 1 cut(s) 455
EaeI YGGCCR 2 cut(s) 58, 384
Eam1104I CTCTTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 155
Eco130I CCWWGG 3 cut(s) 368, 404, 418
Eco57I CTGAAG 1 cut(s) 231
EcoRI GAATTC 2 cut(s) 399, 587
EcoT14I CCWWGG 3 cut(s) 368, 404, 418
ErhI CCWWGG 3 cut(s) 368, 404, 418
FaeI CATG 4 cut(s) 52, 268, 422, 601
FalI AAGNNNNNCTT 2 cut(s) 168, 200
FatI CATG 4 cut(s) 48, 264, 418, 597
Fnu4HI GCNGC 1 cut(s) 387
FokI GGATG 1 cut(s) 595
Fsp4HI GCNGC 1 cut(s) 387
FspBI CTAG 1 cut(s) 572
GlaI GCGC 1 cut(s) 445
GluI GCNGC 1 cut(s) 387
GsaI CCCAGC 1 cut(s) 219
HaeIII GGCC 2 cut(s) 60, 386
HhaI GCGC 1 cut(s) 446
Hin1II CATG 4 cut(s) 52, 268, 422, 601
Hin6I GCGC 1 cut(s) 444
HinP1I GCGC 1 cut(s) 444
HinfI GANTC 5 cut(s) 11, 423, 494, 500, 581
HphI GGTGA 2 cut(s) 185, 590
Hpy188I TCNGA 3 cut(s) 493, 499, 586
Hpy188III TCNNGA 5 cut(s) 227, 242, 535, 572, 592
HpyAV CCTTC 1 cut(s) 26
HpyCH4V TGCA 2 cut(s) 117, 143
HpyF10VI GCNNNNNNNGC 1 cut(s) 107
HpyF3I CTNAG 1 cut(s) 452
Hsp92II CATG 4 cut(s) 52, 268, 422, 601
HspAI GCGC 1 cut(s) 444
Kzo9I GATC 2 cut(s) 238, 531
LpnPI CCDG 4 cut(s) 201, 302, 537, 570
LweI GCATC 1 cut(s) 104
MaeI CTAG 1 cut(s) 572
MaeIII GTNAC 1 cut(s) 124
MalI GATC 2 cut(s) 240, 533
MboI GATC 2 cut(s) 238, 531
MboII GAAGA 4 cut(s) 32, 142, 248, 424
MflI RGATCY 1 cut(s) 238
MlsI TGGCCA 1 cut(s) 60
MluCI AATT 5 cut(s) 197, 275, 399, 551, 587
MluNI TGGCCA 1 cut(s) 60
MlyI GAGTC 2 cut(s) 20, 590
MnlI CCTC 5 cut(s) 164, 214, 234, 348, 483
Mox20I TGGCCA 1 cut(s) 60
MscI TGGCCA 1 cut(s) 60
MseI TTAA 1 cut(s) 195
Msp20I TGGCCA 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 107
NcoI CCATGG 1 cut(s) 418
NdeII GATC 2 cut(s) 238, 531
NlaIII CATG 4 cut(s) 52, 268, 422, 601
NspI RCATGY 1 cut(s) 601
PcsI WCGNNNNNNNCGW 1 cut(s) 485
PfeI GAWTC 3 cut(s) 423, 494, 500
PkrI GCNGC 1 cut(s) 388
PleI GAGTC 2 cut(s) 19, 589
PpsI GAGTC 2 cut(s) 19, 589
PspFI CCCAGC 1 cut(s) 215
PsuI RGATCY 1 cut(s) 238
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 1 cut(s) 387
Sau3AI GATC 2 cut(s) 238, 531
SchI GAGTC 2 cut(s) 20, 590
SetI ASST 7 cut(s) 27, 175, 217, 293, 312, 321, 475
SfaNI GCATC 1 cut(s) 104
SfcI CTRYAG 1 cut(s) 375
SmlI CTYRAG 2 cut(s) 225, 311
SmoI CTYRAG 2 cut(s) 225, 311
Sse9I AATT 5 cut(s) 197, 275, 399, 551, 587
SsiI CCGC 1 cut(s) 387
SspMI CTAG 1 cut(s) 572
StyI CCWWGG 3 cut(s) 368, 404, 418
TasI AATT 5 cut(s) 197, 275, 399, 551, 587
TauI GCSGC 1 cut(s) 389
TfiI GAWTC 3 cut(s) 423, 494, 500
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 1 cut(s) 456
TspDTI ATGAA 2 cut(s) 37, 554
TspRI CASTG 1 cut(s) 456
XapI RAATTY 4 cut(s) 197, 275, 399, 587
XbaI TCTAGA 1 cut(s) 571
XceI RCATGY 1 cut(s) 601
XspI CTAG 1 cut(s) 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.