RchiOBHm_Chr6g0256041

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000135
Physical Location & Seq
Reverse (-)
11441369 .. 11442505
1137 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22965

Sequence Viewer

Length: 972 bp
ATGGTTGAAAGGTATGAAGACCTCCAGAAGTTCTTGAAGGCCACCACGATGCTAGAGCAACCACTTGAGAAGTTGATCAAAGAACACAGACCCAATTGTCTTGTAGCCGACATATTTTTCCCATGGACAACTGATGTCGCTGCAAGGTTTGAAATTCCAAGGCTTATTTTCCATGGAACAAATTTCATCTCTCTATCAGTTTCACAGTATTTGATGAAAATGGACCTCACAGAACTGTCCGATTCCAAACCACTTGTCATTCCCAATTTACCGCATGAGTTCAAGATTCCAGGAAACCAAATACCTGATTTCATGAATCAAGAATCCTATGTTGACCATTATAGGAACGTTCTGGGAATCAAGGCTTGGCATATAGGCCCCACATTTCTATGCCATAAGGAGATTGAAGATAAGGCACAAAGAGGACTAACAAGCTCCATAGATGGACTTGAATGTCAGAAATGGCTGGATTCCAAGAAACCCAATTCAGTAATTTATGTGAGCTTCAGGAGTGTTGTCAAGAAAGATGAAAATAATGATCATGAAAGTGATAAGGATTGGTTGCCGGAAGGGTTTGAGAAGAGAGTTGAAAGCAGAGGACTAGTTATAAGAGGGTGGGCACCTCAGGTGCAAATTCTTGAACACGTGGCGGTCGGAGGCTTTGTGACACATTGTGGGTGGAACTCGACGCTTGAAGCAGTGTCTGCTGGAGTTCCGATGGCTACGTGGCCGGCGTTTGCTGACCAGTTTCACAATGAAAAGCTGGTGACTCAAATACTTGGCATTGGGGTTGGTATTGGTGTTTCAAATTGGGCTAGATTTGGAGGGGAAAAAGTGATGAGTGAAGCTATAGAGAAGGTGGTGAAACATATTATGGTGGGTGAAGAAGCAGAGGAAATGAGAAGCAGAGCCAAGAAGCTTGGGGAAGTGGCAAGAAAGGGTGTGGTGGAAGGCGGATCATCTTACTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

323

Amino Acids

36.53

Weight (kDa)

6.03

Isoelectric Point (pI)

35.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 203 - 259 8.6e-16 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000135)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15480 AT2G15480 AT2G15490 AT2G15490 AT2G15490 AT4G34131 AT4G34135 AT4G34135 AT4G34138
fragaria_vesca FvH4_2g05600 FvH4_2g05601 FvH4_2g05602 FvH4_2g05603 FvH4_2g05604 FvH4_2g05630 FvH4_2g05660 FvH4_2g05662 FvH4_2g05663 FvH4_2g05671 FvH4_2g05680 FvH4_3g09760 FvH4_3g09780 FvH4_7g23180
malus_domestica MD00G1046200.v1.1 MD04G1214200.v1.1 MD05G1085700.v1.1 MD05G1085800.v1.1 MD05G1086200.v1.1 MD05G1086300.v1.1 MD05G1091500.v1.1 MD07G1007400.v1.1 MD07G1007500.v1.1 MD07G1007600.v1.1 MD17G1100000.v1.1 MD17G1100300.v1.1
prunus_persica Prupe.8G129800_v2.0.a1 Prupe.8G130100_v2.0.a1 Prupe.8G130200_v2.0.a1 Prupe.8G130300_v2.0.a1 Prupe.8G130400_v2.0.a1 Prupe.8G130500_v2.0.a1 Prupe.8G130600_v2.0.a1 Prupe.8G130700_v2.0.a1 Prupe.8G130800_v2.0.a1 Prupe.8G130900_v2.0.a1 Prupe.8G131000_v2.0.a1 Prupe.8G131000_v2.0.a1
pyrus_communis pycom05g08530 pycom05g08560 pycom07g00600 pycom07g00610 pycom07g00620 pycom17g09520 pycom2675g00060
rosa_chinensis RchiOBHm_Chr2g0111601 RchiOBHm_Chr2g0125751 RchiOBHm_Chr6g0248631 RchiOBHm_Chr6g0248721 RchiOBHm_Chr6g0255881 RchiOBHm_Chr6g0255911 RchiOBHm_Chr6g0255931 RchiOBHm_Chr6g0256041 RchiOBHm_Chr6g0256061 RchiOBHm_Chr6g0256081 RchiOBHm_Chr6g0256121 RchiOBHm_Chr6g0256131 RchiOBHm_Chr6g0256151 RchiOBHm_Chr6g0256161 RchiOBHm_Chr6g0256211 RchiOBHm_Chr6g0256221 RchiOBHm_Chr6g0256241 RchiOBHm_Chr6g0256251 RchiOBHm_Chr6g0256311 RchiOBHm_Chr6g0256331 RchiOBHm_Chr6g0256351 RchiOBHm_Chr6g0256361 RchiOBHm_Chr6g0256371 RchiOBHm_Chr6g0256411 RchiOBHm_Chr6g0256421 RchiOBHm_Chr6g0256431 RchiOBHm_Chr6g0256461 RchiOBHm_Chr6g0256471 RchiOBHm_Chr6g0256501 RchiOBHm_Chr6g0256511 RchiOBHm_Chr6g0256521 RchiOBHm_Chr6g0256531 RchiOBHm_Chr6g0256611 RchiOBHm_Chr6g0257761 RchiOBHm_Chr6g0276931
rosa_laevigata RLG00000014720 RLG00000014721 RLG00000014763 RLG00000014766 RLG00000014768 RLG00000014769 RLG00000014770 RLG00000014774 RLG00000014776 RLG00000014777 RLG00000014778 RLG00000014781 RLG00000014782 RLG00000014783 RLG00000014786 RLG00000014787 RLG00000014788 RLG00000014789 RLG00000014790 RLG00000014791 RLG00000014793 RLG00000014795 RLG00000014799 RLG00000014800 RLG00000014803 RLG00000014805 RLG00000015130 RLG00000015139
rosa_multiflora Rmu_co8160604.1_g000001 Rmu_sc0001598.1_g000016 Rmu_sc0001598.1_g000018 Rmu_sc0001598.1_g000024 Rmu_sc0001738.1_g000012 Rmu_sc0001738.1_g000013 Rmu_sc0001896.1_g000025 Rmu_sc0001896.1_g000029 Rmu_sc0001896.1_g000037 Rmu_sc0001896.1_g000039 Rmu_sc0002393.1_g000006 Rmu_sc0002553.1_g000039 Rmu_sc0004414.1_g000007 Rmu_sc0005080.1_g000001 Rmu_sc0005080.1_g000002 Rmu_sc0005080.1_g000003 Rmu_sc0005080.1_g000006 Rmu_sc0005080.1_g000007 Rmu_sc0005080.1_g000008 Rmu_sc0005080.1_g000010 Rmu_sc0005080.1_g000011 Rmu_sc0005080.1_g000012 Rmu_sc0008707.1_g000001 Rmu_sc0008707.1_g000003 Rmu_sc0008832.1_g000002 Rmu_sc0010826.1_g000012 Rmu_sc0011315.1_g000009 Rmu_sc0019708.1_g000001
rosa_roxburghii Rroxscaffold_2G00108580 Rroxscaffold_7G00208920 Rroxscaffold_7G00209240 Rroxscaffold_7G00209250 Rroxscaffold_7G00209260 Rroxscaffold_7G00209270 Rroxscaffold_7G00209360 Rroxscaffold_7G00209380 Rroxscaffold_7G00209390 Rroxscaffold_7G00209430 Rroxscaffold_7G00209440 Rroxscaffold_7G00209510 Rroxscaffold_7G00209540
rosa_rugosa Rorug05G0532600 Rorug05G0562400 Rorug05G0562500 Rorug05G0563000 Rorug05G0563100 Rorug05G0563300 Rorug05G0563300 Rorug05G0563600 Rorug05G0563700 Rorug05G0563800 Rorug05G0564000 Rorug05G0564100 Rorug05G0564200 Rorug05G0564300 Rorug05G0564400 Rorug05G0564500 Rorug05G0564600 Rorug05G0564600 Rorug05G0568600 Rorug05G0568700
rosa_wichuraiana Rw6G004280 Rw6G004380 Rw6G006940 Rw6G006950 Rw6G006960 Rw6G007000 Rw6G007090 Rw6G007100 Rw6G007110 Rw6G007150 Rw6G007160 Rw6G007170 Rw6G007200 Rw6G007210 Rw6G007240 Rw6G007250 Rw6G007280 Rw6G007290 Rw6G007300 Rw6G007310 Rw6G007320 Rw6G007340 Rw6G007350 Rw6G007360 Rw6G007380 Rw6G007660 Rw6G018660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 608
AasI GACNNNNNNGTC 2 cut(s) 96, 453
AccB1I GGYRCC 1 cut(s) 619
AciI CCGC 3 cut(s) 272, 650, 954
AclI AACGTT 1 cut(s) 348
AclWI GGATC 1 cut(s) 964
AcoI YGGCCR 1 cut(s) 728
AcsI RAATTY 3 cut(s) 153, 181, 633
AcuI CTGAAG 1 cut(s) 490
AcvI CACGTG 1 cut(s) 646
AdeI CACNNNGTG 1 cut(s) 674
AflIII ACRYGT 1 cut(s) 643
AhlI ACTAGT 1 cut(s) 601
AjnI CCWGG 1 cut(s) 289
AjuI GAANNNNNNNTTGG 2 cut(s) 349, 381
AluBI AGCT 5 cut(s) 435, 504, 763, 848, 919
AluI AGCT 5 cut(s) 435, 504, 763, 848, 919
AlwI GGATC 1 cut(s) 964
AlwNI CAGNNNCTG 1 cut(s) 704
AoxI GGCC 3 cut(s) 39, 376, 728
ApeKI GCWGC 1 cut(s) 140
ApoI RAATTY 3 cut(s) 153, 181, 633
ArsI GACNNNNNNTTYG 2 cut(s) 240, 272
AspS9I GGNCC 2 cut(s) 223, 377
AsuHPI GGTGA 3 cut(s) 778, 874, 893
AvaII GGWCC 1 cut(s) 223
AxyI CCTNAGG 1 cut(s) 624
BaeGI GKGCMC 1 cut(s) 622
BanI GGYRCC 1 cut(s) 619
BbrPI CACGTG 1 cut(s) 646
BbsI GAAGAC 1 cut(s) 24
BbvI GCAGC 1 cut(s) 127
BccI CCATC 2 cut(s) 437, 712
BciT130I CCWGG 1 cut(s) 291
BclI TGATCA 2 cut(s) 75, 538
BcuI ACTAGT 1 cut(s) 601
BfaI CTAG 3 cut(s) 53, 602, 816
BfmI CTRYAG 1 cut(s) 849
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 1 cut(s) 223
BmgT120I GGNCC 2 cut(s) 223, 377
BmiI GGNNCC 2 cut(s) 379, 621
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 1 cut(s) 39
BpiI GAAGAC 1 cut(s) 24
BpmI CTGGAG 2 cut(s) 8, 729
BpuEI CTTGAG 1 cut(s) 86
BsaAI YACGTR 2 cut(s) 646, 726
BsaJI CCNNGG 3 cut(s) 122, 158, 172
BsaXI ACNNNNNCTCC 2 cut(s) 648, 678
Bse118I RCCGGY 1 cut(s) 730
Bse1I ACTGG 1 cut(s) 745
Bse21I CCTNAGG 1 cut(s) 624
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 3 cut(s) 122, 158, 172
BseMII CTCAG 1 cut(s) 638
BseNI ACTGG 1 cut(s) 745
BseSI GKGCMC 1 cut(s) 622
BseXI GCAGC 1 cut(s) 127
Bsh1285I CGRYCG 1 cut(s) 654
BshFI GGCC 3 cut(s) 41, 378, 730
BshNI GGYRCC 1 cut(s) 619
BsiEI CGRYCG 1 cut(s) 654
BsiSI CCGG 2 cut(s) 566, 731
BsnI GGCC 3 cut(s) 41, 378, 730
Bsp1286I GDGCHC 1 cut(s) 622
Bsp143I GATC 3 cut(s) 75, 538, 956
Bsp19I CCATGG 2 cut(s) 122, 172
BspACI CCGC 3 cut(s) 272, 650, 954
BspANI GGCC 3 cut(s) 41, 378, 730
BspCNI CTCAG 1 cut(s) 637
BspHI TCATGA 2 cut(s) 312, 541
BspLI GGNNCC 2 cut(s) 379, 621
BspPI GGATC 1 cut(s) 964
BspT107I GGYRCC 1 cut(s) 619
BsrFI RCCGGY 1 cut(s) 730
BsrI ACTGG 1 cut(s) 745
BssAI RCCGGY 1 cut(s) 730
BssECI CCNNGG 3 cut(s) 122, 158, 172
BssMI GATC 3 cut(s) 75, 538, 956
BssT1I CCWWGG 3 cut(s) 122, 158, 172
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 3 cut(s) 207, 237, 968
Bst6I CTCTTC 1 cut(s) 575
BstAPI GCANNNNNTGC 1 cut(s) 704
BstBAI YACGTR 2 cut(s) 646, 726
BstC8I GCNNGC 1 cut(s) 732
BstDEI CTNAG 1 cut(s) 624
BstDSI CCRYGG 2 cut(s) 122, 172
BstKTI GATC 3 cut(s) 78, 541, 959
BstMBI GATC 3 cut(s) 75, 538, 956
BstMCI CGRYCG 1 cut(s) 654
BstMWI GCNNNNNNNGC 1 cut(s) 704
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 1 cut(s) 849
BstSLI GKGCMC 1 cut(s) 622
BstV1I GCAGC 1 cut(s) 127
BstV2I GAAGAC 1 cut(s) 24
Bsu36I CCTNAGG 1 cut(s) 624
BsuRI GGCC 3 cut(s) 41, 378, 730
BtgI CCRYGG 2 cut(s) 122, 172
BtsI GCAGTG 1 cut(s) 705
BtsIMutI CAGTG 1 cut(s) 705
Cac8I GCNNGC 1 cut(s) 732
CaiI CAGNNNCTG 1 cut(s) 704
CciI TCATGA 2 cut(s) 312, 541
Cfr10I RCCGGY 1 cut(s) 730
Cfr13I GGNCC 2 cut(s) 223, 377
CseI GACGC 1 cut(s) 697
CviAII CATG 5 cut(s) 123, 173, 275, 313, 542
DdeI CTNAG 1 cut(s) 624
DpnI GATC 3 cut(s) 77, 540, 958
DpnII GATC 3 cut(s) 75, 538, 956
DraIII CACNNNGTG 1 cut(s) 674
DrdI GACNNNNNNGTC 2 cut(s) 96, 453
DseDI GACNNNNNNGTC 2 cut(s) 96, 453
EaeI YGGCCR 1 cut(s) 728
Eam1104I CTCTTC 1 cut(s) 575
EarI CTCTTC 1 cut(s) 575
EciI GGCGGA 1 cut(s) 969
Eco130I CCWWGG 3 cut(s) 122, 158, 172
Eco47I GGWCC 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 490
Eco72I CACGTG 1 cut(s) 646
Eco81I CCTNAGG 1 cut(s) 624
EcoO109I RGGNCCY 1 cut(s) 377
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 3 cut(s) 122, 158, 172
ErhI CCWWGG 3 cut(s) 122, 158, 172
FaeI CATG 5 cut(s) 126, 176, 278, 316, 545
FatI CATG 5 cut(s) 122, 172, 274, 312, 541
FbaI TGATCA 2 cut(s) 75, 538
Fnu4HI GCNGC 1 cut(s) 141
Fsp4HI GCNGC 1 cut(s) 141
FspBI CTAG 3 cut(s) 53, 602, 816
GluI GCNGC 1 cut(s) 141
GsuI CTGGAG 2 cut(s) 8, 729
HaeIII GGCC 3 cut(s) 41, 378, 730
HapII CCGG 2 cut(s) 566, 731
HgaI GACGC 1 cut(s) 697
Hin1II CATG 5 cut(s) 126, 176, 278, 316, 545
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HindIII AAGCTT 1 cut(s) 917
HinfI GANTC 7 cut(s) 242, 286, 316, 323, 357, 470, 769
HpaII CCGG 2 cut(s) 566, 731
HphI GGTGA 3 cut(s) 778, 874, 893
Hpy166II GTNNAC 1 cut(s) 334
Hpy188I TCNGA 4 cut(s) 241, 459, 656, 717
Hpy188III TCNNGA 9 cut(s) 25, 34, 283, 313, 320, 508, 520, 542, 638
Hpy8I GTNNAC 1 cut(s) 334
Hpy99I CGWCG 1 cut(s) 691
HpyAV CCTTC 4 cut(s) 31, 563, 850, 944
HpyCH4III ACNGT 3 cut(s) 207, 237, 968
HpyCH4IV ACGT 3 cut(s) 348, 645, 725
HpyCH4V TGCA 2 cut(s) 143, 631
HpyF10VI GCNNNNNNNGC 1 cut(s) 704
HpyF3I CTNAG 1 cut(s) 624
HpySE526I ACGT 3 cut(s) 348, 645, 725
Hsp92II CATG 5 cut(s) 126, 176, 278, 316, 545
KroI GCCGGC 1 cut(s) 730
KroNI GCCGGC 1 cut(s) 732
Ksp22I TGATCA 2 cut(s) 75, 538
Kzo9I GATC 3 cut(s) 75, 538, 956
LmnI GCTCC 1 cut(s) 440
Lsp1109I GCAGC 1 cut(s) 127
LweI GCATC 1 cut(s) 39
MaeI CTAG 3 cut(s) 53, 602, 816
MaeII ACGT 3 cut(s) 348, 645, 725
MaeIII GTNAC 2 cut(s) 664, 766
MalI GATC 3 cut(s) 77, 540, 958
MboI GATC 3 cut(s) 75, 538, 956
MboII GAAGA 4 cut(s) 29, 419, 592, 896
MfeI CAATTG 1 cut(s) 94
MhlI GDGCHC 1 cut(s) 622
MluCI AATT 8 cut(s) 94, 153, 181, 265, 484, 492, 633, 808
MlyI GAGTC 1 cut(s) 763
MmeI TCCRAC 1 cut(s) 634
MnlI CCTC 9 cut(s) 32, 236, 416, 590, 605, 633, 650, 818, 886
MroNI GCCGGC 1 cut(s) 730
MslI CAYNNNNRTG 3 cut(s) 47, 388, 546
MspI CCGG 2 cut(s) 566, 731
MspR9I CCNGG 1 cut(s) 291
MunI CAATTG 1 cut(s) 94
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 1 cut(s) 704
NaeI GCCGGC 1 cut(s) 732
NcoI CCATGG 2 cut(s) 122, 172
NdeII GATC 3 cut(s) 75, 538, 956
NgoMIV GCCGGC 1 cut(s) 730
NlaIII CATG 5 cut(s) 126, 176, 278, 316, 545
NlaIV GGNNCC 2 cut(s) 379, 621
NmuCI GTSAC 2 cut(s) 664, 766
PagI TCATGA 2 cut(s) 312, 541
PcsI WCGNNNNNNNCGW 1 cut(s) 731
PdiI GCCGGC 1 cut(s) 732
PfeI GAWTC 6 cut(s) 242, 286, 316, 323, 357, 470
PfoI TCCNGGA 1 cut(s) 289
PkrI GCNGC 1 cut(s) 142
PleI GAGTC 1 cut(s) 763
PmaCI CACGTG 1 cut(s) 646
PmlI CACGTG 1 cut(s) 646
PpsI GAGTC 1 cut(s) 763
Ppu21I YACGTR 2 cut(s) 646, 726
PsiI TTATAA 1 cut(s) 608
Psp1406I AACGTT 1 cut(s) 348
Psp6I CCWGG 1 cut(s) 289
PspCI CACGTG 1 cut(s) 646
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 2 cut(s) 379, 621
PspPI GGNCC 2 cut(s) 223, 377
PstNI CAGNNNCTG 1 cut(s) 704
RseI CAYNNNNRTG 3 cut(s) 47, 388, 546
SatI GCNGC 1 cut(s) 141
Sau3AI GATC 3 cut(s) 75, 538, 956
Sau96I GGNCC 2 cut(s) 223, 377
SchI GAGTC 1 cut(s) 763
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 1 cut(s) 622
SfaNI GCATC 1 cut(s) 39
SfcI CTRYAG 1 cut(s) 849
SinI GGWCC 1 cut(s) 223
SmiMI CAYNNNNRTG 3 cut(s) 47, 388, 546
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
SpeI ACTAGT 1 cut(s) 601
Sse9I AATT 8 cut(s) 94, 153, 181, 265, 484, 492, 633, 808
SsiI CCGC 3 cut(s) 272, 650, 954
SspMI CTAG 3 cut(s) 53, 602, 816
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 3 cut(s) 122, 158, 172
TaaI ACNGT 3 cut(s) 207, 237, 968
TaiI ACGT 3 cut(s) 351, 648, 728
TaqI TCGA 1 cut(s) 686
TasI AATT 8 cut(s) 94, 153, 181, 265, 484, 492, 633, 808
TfiI GAWTC 6 cut(s) 242, 286, 316, 323, 357, 470
TscAI CASTG 1 cut(s) 705
TseFI GTSAC 2 cut(s) 664, 766
TseI GCWGC 1 cut(s) 140
Tsp45I GTSAC 2 cut(s) 664, 766
TspDTI ATGAA 8 cut(s) 30, 175, 230, 301, 329, 543, 558, 771
TspRI CASTG 1 cut(s) 705
VpaK11BI GGWCC 1 cut(s) 223
XapI RAATTY 3 cut(s) 153, 181, 633
XspI CTAG 3 cut(s) 53, 602, 816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.