FvH4_3g39620

UDP-glycosyltransferase 87A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000228
Physical Location & Seq
Forward (+)
33654194 .. 33656458
2265 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g39620.t1

Sequence Viewer

Length: 1002 bp
ATGGATTCCTCGGCCACAGGACAACCTTCCGACGTCTGCCACATTGTAGCAATGCCCTATCCCGGCCGGGGTCACATAAACCCGATGATGAACCTCTGCAACTTACTAATTTCCCAAAAGACTGATATTTTGATAACCTTCGTCCTCACAGAAGAGTGGCTCGGCTTAATCGGGTCCGAAGCCAAACCAGACAACATTCGCTTCGCCACAGTCCCTAATGTGATCCCATCGGAGAAGGATCGTGCTGCCGACATGGTTGCGTTCTTTGAAGCCATCATGACCAAAATGGAAGCTCCGTTTGAGCAGCTCCTGGTTGGTCTTGAGCCGCCGCCTAGTGCCATTGTAGCTGACACTTTCCTTCCTTGGGCAGTCACCGTCGGCAACCGGAGGAATATTTCTGCGGTGTCTTTTTGGCCAATGTGCGGGTCTCATTTCTCCGTGTACCACCATTTTCATCTATTCCAGCAAAACGGACACTTCCCAGTTGACTTGTTAGAGAAGGGCAATGAACGTGTTGACTACATCCCAGGAGTTTCTTCCACACGATTAGCGGACACTACTAGTTTCATTGATGGGAGCCAATCAAAAATTCTAGACAATATTCTCAAGGCTTTTTCTTGGGTGCCTAAAGCACAGTATCTCTTCGTCACCTCCATCTATGAGCTTGAAACTCAAGTAATTGATGTTTTAAGATCAGAACTCTCACTACCAGTTTACACAGTAGGCCCATTAATACCTTCCTTCAAAGCTATCAGTCCTACTGCTACTAACCACCTACAATGGTTGGATTCTCAACCTTGTAGCTCTGTTTTATATATCTCTATGGGAAGCTTTCTTTCAGTTTCAAGTGCCCAAATGGATGAGATCGCAGTTGGTTTGCGCAAGAGTGGTGTTCGATTCTTTTGGGTGGCTCGCGCTGAAACTAAAAGGTTACAAGAGGTTTGTGGTGATATGGGGTTAGTTGTTCCCTGGTGTGACCAATTAAGGGTGATATGGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

334

Amino Acids

37.02

Weight (kDa)

5.36

Isoelectric Point (pI)

42.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000228)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30140 AT2G30140 AT2G30150 AT2G30150
fragaria_vesca FvH4_3g39560 FvH4_3g39570 FvH4_3g39580 FvH4_3g39590 FvH4_3g39591 FvH4_3g39620 FvH4_3g39630 FvH4_3g39630 FvH4_3g39631
malus_domestica MD03G1059700.v1.1 MD11G1061800.v1.1 MD11G1061900.v1.1 MD11G1062000.v1.1 MD11G1062100.v1.1 MD11G1062200.v1.1 MD11G1062300.v1.1 MD11G1062400.v1.1 MD11G1062500.v1.1 MD11G1062600.v1.1 MD11G1062700.v1.1 MD11G1062800.v1.1
prunus_persica Prupe.6G049300_v2.0.a1 Prupe.6G049400_v2.0.a1 Prupe.6G049600_v2.0.a1 Prupe.6G049700_v2.0.a1 Prupe.6G049900_v2.0.a1 Prupe.6G050000_v2.0.a1 Prupe.6G050100_v2.0.a1 Prupe.6G050200_v2.0.a1
pyrus_communis pycom03g04800 pycom11g05140 pycom11g05170 pycom11g05180 pycom11g05190 pycom11g05220 pycom11g05230 pycom11g05240 pycom11g05260 pycom11g05270
rosa_chinensis RchiOBHm_Chr5g0071331 RchiOBHm_Chr5g0071341 RchiOBHm_Chr5g0071371 RchiOBHm_Chr5g0071381 RchiOBHm_Chr5g0071431 RchiOBHm_Chr5g0071441 RchiOBHm_Chr5g0071451 RchiOBHm_Chr5g0071461 RchiOBHm_Chr5g0071471
rosa_laevigata RLG00000036203 RLG00000036204 RLG00000036207 RLG00000036208 RLG00000036209 RLG00000036210 RLG00000036213 RLG00000036214 RLG00000036215 RLG00000036217
rosa_multiflora Rmu_co8256977.1_g000001 Rmu_co8352537.1_g000001 Rmu_sc0001567.1_g000004 Rmu_sc0004697.1_g000003 Rmu_sc0006990.1_g000003 Rmu_sc0006990.1_g000004 Rmu_sc0009988.1_g000004 Rmu_sc0009988.1_g000005 Rmu_sc0009988.1_g000006 Rmu_sc0009988.1_g000008 Rmu_sc0009988.1_g000009 Rmu_sc0009988.1_g000014 Rmu_sc0009988.1_g000020 Rmu_sc0009988.1_g000021
rosa_roxburghii Rroxscaffold_1G00009650 Rroxscaffold_1G00009670 Rroxscaffold_1G00009680 Rroxscaffold_1G00009740 Rroxscaffold_1G00009760 Rroxscaffold_1G00009780 Rroxscaffold_1G00009800 Rroxscaffold_7G00203790
rosa_rugosa Rorug05G0411400 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411700 Rorug05G0411700 Rorug05G0411900 Rorug05G0412000 Rorug05G0412200 Rorug05G0412300 Rorug05G0412400 Rorug05G0412500
rosa_samantha Rh1AG118000 Rh1BG088900 Rh1CG112900 Rh5AG467800 Rh5AG467900 Rh5AG468100 Rh5AG468200 Rh5AG468300 Rh5AG468400 Rh5AG468500 Rh5AG468600 Rh5BG486300 Rh5BG486400 Rh5BG486600 Rh5BG486700 Rh5BG486800 Rh5BG487100 Rh5BG487200 Rh5BG487300 Rh5BG487400 Rh5BG487500 Rh5BG487700 Rh5CG510700 Rh5CG510800 Rh5CG511000 Rh5CG511100 Rh5CG511200 Rh5CG511400 Rh5CG511500 Rh5CG511600 Rh5CG511700 Rh5CG511900 Rh5DG497500 Rh5DG497600 Rh5DG497700 Rh5DG498000 Rh5DG498300 Rh5DG498400 Rh5DG498500 Rh5DG498600 Rh5DG498700
rosa_wichuraiana Rw5G043460 Rw5G043470 Rw5G043480 Rw5G043490 Rw5G043500 Rw5G043510 Rw5G043530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 36
Acc16I TGCGCA 1 cut(s) 881
AccB1I GGYRCC 1 cut(s) 622
AccII CGCG 1 cut(s) 915
AciI CCGC 5 cut(s) 326, 329, 401, 423, 551
AclWI GGATC 2 cut(s) 217, 246
AcoI YGGCCR 3 cut(s) 12, 64, 413
AcsI RAATTY 1 cut(s) 588
AcyI GRCGYC 1 cut(s) 33
AfaI GTAC 1 cut(s) 443
AfiI CCNNNNNNNGG 5 cut(s) 62, 68, 364, 422, 985
AflIII ACRYGT 1 cut(s) 511
AgsI TTSAA 4 cut(s) 269, 668, 745, 846
AhlI ACTAGT 1 cut(s) 560
AjnI CCWGG 3 cut(s) 309, 526, 968
AjuI GAANNNNNNNTTGG 2 cut(s) 573, 605
AluBI AGCT 7 cut(s) 293, 307, 347, 664, 749, 804, 831
AluI AGCT 7 cut(s) 293, 307, 347, 664, 749, 804, 831
Alw26I GTCTC 1 cut(s) 432
AlwI GGATC 2 cut(s) 217, 246
AlwNI CAGNNNCTG 1 cut(s) 310
AoxI GGCC 4 cut(s) 12, 64, 413, 724
ApeKI GCWGC 2 cut(s) 245, 304
ApoI RAATTY 1 cut(s) 588
ArsI GACNNNNNNTTYG 2 cut(s) 112, 144
AseI ATTAAT 1 cut(s) 731
AspLEI GCGC 2 cut(s) 882, 917
AspS9I GGNCC 2 cut(s) 174, 725
AsuC2I CCSGG 2 cut(s) 63, 68
AsuHPI GGTGA 4 cut(s) 364, 640, 959, 1000
AvaII GGWCC 1 cut(s) 174
BaeGI GKGCMC 1 cut(s) 853
BalI TGGCCA 1 cut(s) 415
BanI GGYRCC 1 cut(s) 622
BbvI GCAGC 2 cut(s) 232, 316
BccI CCATC 4 cut(s) 235, 281, 566, 662
BcgI CGANNNNNNTGC 2 cut(s) 239, 273
BciT130I CCWGG 3 cut(s) 311, 528, 970
BcnI CCSGG 2 cut(s) 63, 68
BcoDI GTCTC 1 cut(s) 432
BcuI ACTAGT 1 cut(s) 560
BfaI CTAG 3 cut(s) 333, 561, 593
BisI GCNGC 4 cut(s) 246, 305, 326, 329
BlsI GCNGC 4 cut(s) 247, 306, 327, 330
Bme1390I CCNGG 5 cut(s) 63, 68, 311, 528, 970
Bme18I GGWCC 1 cut(s) 174
BmgT120I GGNCC 2 cut(s) 174, 725
BmiI GGNNCC 3 cut(s) 175, 578, 624
BmrFI CCNGG 5 cut(s) 63, 68, 311, 528, 970
BmrI ACTGGG 1 cut(s) 476
BmuI ACTGGG 1 cut(s) 476
BpuEI CTTGAG 3 cut(s) 341, 590, 657
BpuMI CCSGG 2 cut(s) 63, 68
BsaHI GRCGYC 1 cut(s) 33
BsaI GGTCTC 1 cut(s) 432
BsaJI CCNNGG 5 cut(s) 9, 67, 362, 526, 968
BsaWI WCCGGW 1 cut(s) 384
Bsc4I CCNNNNNNNGG 5 cut(s) 62, 68, 364, 422, 985
Bse1I ACTGG 2 cut(s) 482, 710
Bse3DI GCAATG 2 cut(s) 57, 511
BseBI CCWGG 3 cut(s) 311, 528, 970
BseDI CCNNGG 5 cut(s) 9, 67, 362, 526, 968
BseGI GGATG 2 cut(s) 522, 865
BseLI CCNNNNNNNGG 5 cut(s) 62, 68, 364, 422, 985
BseMI GCAATG 2 cut(s) 57, 511
BseNI ACTGG 2 cut(s) 482, 710
BseSI GKGCMC 1 cut(s) 853
BseX3I CGGCCG 1 cut(s) 64
BseXI GCAGC 2 cut(s) 232, 316
Bsh1236I CGCG 1 cut(s) 915
Bsh1285I CGRYCG 1 cut(s) 67
BshFI GGCC 4 cut(s) 14, 66, 415, 726
BshNI GGYRCC 1 cut(s) 622
BsiEI CGRYCG 1 cut(s) 67
BsiSI CCGG 3 cut(s) 63, 67, 385
BslFI GGGAC 1 cut(s) 197
BslI CCNNNNNNNGG 5 cut(s) 62, 68, 364, 422, 985
BsmAI GTCTC 1 cut(s) 432
BsmFI GGGAC 1 cut(s) 197
BsnI GGCC 4 cut(s) 14, 66, 415, 726
Bso31I GGTCTC 1 cut(s) 432
Bsp1286I GDGCHC 1 cut(s) 853
Bsp143I GATC 4 cut(s) 222, 238, 692, 864
BspACI CCGC 5 cut(s) 326, 329, 401, 423, 551
BspANI GGCC 4 cut(s) 14, 66, 415, 726
BspFNI CGCG 1 cut(s) 915
BspHI TCATGA 1 cut(s) 276
BspLI GGNNCC 3 cut(s) 175, 578, 624
BspPI GGATC 2 cut(s) 217, 246
BspT107I GGYRCC 1 cut(s) 622
BspTNI GGTCTC 1 cut(s) 432
BsrDI GCAATG 2 cut(s) 57, 511
BsrI ACTGG 2 cut(s) 482, 710
BssECI CCNNGG 5 cut(s) 9, 67, 362, 526, 968
BssMI GATC 4 cut(s) 222, 238, 692, 864
BssNI GRCGYC 1 cut(s) 33
BssT1I CCWWGG 1 cut(s) 362
Bst2UI CCWGG 3 cut(s) 311, 528, 970
Bst4CI ACNGT 4 cut(s) 211, 376, 636, 721
Bst6I CTCTTC 2 cut(s) 147, 647
BstACI GRCGYC 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 913
BstF5I GGATG 2 cut(s) 522, 865
BstFNI CGCG 1 cut(s) 915
BstHHI GCGC 2 cut(s) 882, 917
BstKTI GATC 4 cut(s) 225, 241, 695, 867
BstMAI GTCTC 1 cut(s) 432
BstMBI GATC 4 cut(s) 222, 238, 692, 864
BstMCI CGRYCG 1 cut(s) 67
BstMWI GCNNNNNNNGC 1 cut(s) 344
BstNI CCWGG 3 cut(s) 311, 528, 970
BstSCI CCNGG 5 cut(s) 61, 66, 309, 526, 968
BstSLI GKGCMC 1 cut(s) 853
BstUI CGCG 1 cut(s) 915
BstV1I GCAGC 2 cut(s) 232, 316
BstZI CGGCCG 1 cut(s) 64
BsuRI GGCC 4 cut(s) 14, 66, 415, 726
BtsCI GGATG 2 cut(s) 522, 865
Cac8I GCNNGC 1 cut(s) 913
CaiI CAGNNNCTG 1 cut(s) 310
CciI TCATGA 1 cut(s) 276
CfoI GCGC 2 cut(s) 882, 917
Cfr13I GGNCC 2 cut(s) 174, 725
Csp6I GTAC 1 cut(s) 442
CviAII CATG 2 cut(s) 253, 277
CviQI GTAC 1 cut(s) 442
DpnI GATC 4 cut(s) 224, 240, 694, 866
DpnII GATC 4 cut(s) 222, 238, 692, 864
EaeI YGGCCR 3 cut(s) 12, 64, 413
EagI CGGCCG 1 cut(s) 64
Eam1104I CTCTTC 2 cut(s) 147, 647
EarI CTCTTC 2 cut(s) 147, 647
EclXI CGGCCG 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 362
Eco31I GGTCTC 1 cut(s) 432
Eco47I GGWCC 1 cut(s) 174
Eco52I CGGCCG 1 cut(s) 64
EcoRII CCWGG 3 cut(s) 309, 526, 968
EcoT14I CCWWGG 1 cut(s) 362
ErhI CCWWGG 1 cut(s) 362
FaeI CATG 2 cut(s) 256, 280
FaiI YATR 9 cut(s) 77, 254, 278, 660, 814, 816, 824, 953, 994
FaqI GGGAC 1 cut(s) 197
FatI CATG 2 cut(s) 252, 276
FauI CCCGC 1 cut(s) 416
Fnu4HI GCNGC 4 cut(s) 246, 305, 326, 329
FokI GGATG 2 cut(s) 509, 872
Fsp4HI GCNGC 4 cut(s) 246, 305, 326, 329
FspBI CTAG 3 cut(s) 333, 561, 593
FspI TGCGCA 1 cut(s) 881
GlaI GCGC 2 cut(s) 881, 916
GluI GCNGC 4 cut(s) 246, 305, 326, 329
HaeIII GGCC 4 cut(s) 14, 66, 415, 726
HapII CCGG 3 cut(s) 63, 67, 385
HhaI GCGC 2 cut(s) 882, 917
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 2 cut(s) 256, 280
Hin6I GCGC 2 cut(s) 880, 915
HinP1I GCGC 2 cut(s) 880, 915
HincII GTYRAC 2 cut(s) 487, 517
HindII GTYRAC 2 cut(s) 487, 517
HindIII AAGCTT 1 cut(s) 829
HinfI GANTC 3 cut(s) 5, 788, 897
HpaII CCGG 3 cut(s) 63, 67, 385
HphI GGTGA 4 cut(s) 364, 640, 959, 1000
Hpy166II GTNNAC 4 cut(s) 442, 487, 517, 715
Hpy188I TCNGA 4 cut(s) 31, 178, 232, 697
Hpy188III TCNNGA 3 cut(s) 277, 320, 593
Hpy8I GTNNAC 4 cut(s) 442, 487, 517, 715
Hpy99I CGWCG 2 cut(s) 35, 380
HpyAV CCTTC 7 cut(s) 36, 148, 229, 368, 493, 747, 751
HpyCH4III ACNGT 4 cut(s) 211, 376, 636, 721
HpyCH4IV ACGT 2 cut(s) 33, 511
HpyCH4V TGCA 1 cut(s) 99
HpyF10VI GCNNNNNNNGC 1 cut(s) 344
HpySE526I ACGT 2 cut(s) 33, 511
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 2 cut(s) 256, 280
HspAI GCGC 2 cut(s) 880, 915
Kzo9I GATC 4 cut(s) 222, 238, 692, 864
LmnI GCTCC 3 cut(s) 298, 312, 576
Lsp1109I GCAGC 2 cut(s) 232, 316
MaeI CTAG 3 cut(s) 333, 561, 593
MaeII ACGT 2 cut(s) 33, 511
MaeIII GTNAC 5 cut(s) 71, 370, 646, 930, 974
MalI GATC 4 cut(s) 224, 240, 694, 866
MboI GATC 4 cut(s) 222, 238, 692, 864
MboII GAAGA 3 cut(s) 164, 528, 634
MhlI GDGCHC 1 cut(s) 853
MlsI TGGCCA 1 cut(s) 415
MluCI AATT 4 cut(s) 108, 588, 678, 980
MluNI TGGCCA 1 cut(s) 415
MmeI TCCRAC 2 cut(s) 54, 765
MnlI CCTC 6 cut(s) 19, 104, 155, 381, 661, 931
Mox20I TGGCCA 1 cut(s) 415
MscI TGGCCA 1 cut(s) 415
MseI TTAA 4 cut(s) 167, 689, 731, 983
Msp20I TGGCCA 1 cut(s) 415
MspI CCGG 3 cut(s) 63, 67, 385
MspR9I CCNGG 5 cut(s) 63, 68, 311, 528, 970
MvaI CCWGG 3 cut(s) 311, 528, 970
MvnI CGCG 1 cut(s) 915
MwoI GCNNNNNNNGC 1 cut(s) 344
NciI CCSGG 2 cut(s) 63, 68
NdeII GATC 4 cut(s) 222, 238, 692, 864
NlaIII CATG 2 cut(s) 256, 280
NlaIV GGNNCC 3 cut(s) 175, 578, 624
NmeAIII GCCGAG 1 cut(s) 141
NmuCI GTSAC 4 cut(s) 71, 370, 646, 974
NsbI TGCGCA 1 cut(s) 881
PagI TCATGA 1 cut(s) 276
PfeI GAWTC 3 cut(s) 5, 788, 897
PkrI GCNGC 4 cut(s) 247, 306, 327, 330
PshBI ATTAAT 1 cut(s) 731
Psp6I CCWGG 3 cut(s) 309, 526, 968
PspGI CCWGG 3 cut(s) 309, 526, 968
PspN4I GGNNCC 3 cut(s) 175, 578, 624
PspPI GGNCC 2 cut(s) 174, 725
PsrI GAACNNNNNNTAC 2 cut(s) 690, 722
PstNI CAGNNNCTG 1 cut(s) 310
RsaI GTAC 1 cut(s) 443
RsaNI GTAC 1 cut(s) 442
SaqAI TTAA 4 cut(s) 167, 689, 731, 983
SatI GCNGC 4 cut(s) 246, 305, 326, 329
Sau3AI GATC 4 cut(s) 222, 238, 692, 864
Sau96I GGNCC 2 cut(s) 174, 725
ScrFI CCNGG 5 cut(s) 63, 68, 311, 528, 970
SduI GDGCHC 1 cut(s) 853
SinI GGWCC 1 cut(s) 174
SmlI CTYRAG 3 cut(s) 320, 605, 672
SmoI CTYRAG 3 cut(s) 320, 605, 672
SpeI ACTAGT 1 cut(s) 560
Sse9I AATT 4 cut(s) 108, 588, 678, 980
SsiI CCGC 5 cut(s) 326, 329, 401, 423, 551
SspI AATATT 2 cut(s) 394, 601
SspMI CTAG 3 cut(s) 333, 561, 593
StyD4I CCNGG 5 cut(s) 61, 66, 309, 526, 968
StyI CCWWGG 1 cut(s) 362
TaaI ACNGT 4 cut(s) 211, 376, 636, 721
TaiI ACGT 2 cut(s) 36, 514
TaqI TCGA 1 cut(s) 895
TasI AATT 4 cut(s) 108, 588, 678, 980
TauI GCSGC 2 cut(s) 328, 331
TfiI GAWTC 3 cut(s) 5, 788, 897
Tru1I TTAA 4 cut(s) 167, 689, 731, 983
Tru9I TTAA 4 cut(s) 167, 689, 731, 983
TseFI GTSAC 4 cut(s) 71, 370, 646, 974
TseI GCWGC 2 cut(s) 245, 304
Tsp45I GTSAC 4 cut(s) 71, 370, 646, 974
TspDTI ATGAA 4 cut(s) 104, 443, 522, 556
TspGWI ACGGA 3 cut(s) 285, 427, 486
VpaK11BI GGWCC 1 cut(s) 174
VspI ATTAAT 1 cut(s) 731
XapI RAATTY 1 cut(s) 588
XbaI TCTAGA 1 cut(s) 592
XspI CTAG 3 cut(s) 333, 561, 593
ZraI GACGTC 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.