Rh5AG468500

UDP-glycosyltransferase 87A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000228
Physical Location & Seq
Forward (+)
80395259 .. 80396796
1538 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG468500.1

Sequence Viewer

Length: 807 bp
ATGGATGGAAGCAAACCATATATGCTGGGAAACATCATTGAAGATTTTTCTTGGGTCCCCAAAGTACAATATCTCTTGCTTGCTTCTATCTATGAGCTTGAAACTACAGTCATTGACATTTTAAGATCAGAATTTTCACTGCCTGTTTATACAATTGGTCCATTGATACCTCACTTCAAAGCTAATGACCCTCCTAGTAGTGGTCTAGACTATCTAGAATGGCTAGATTCTCAAACTTTTAGCTCTGTCTTGTACATCTCAATGGGAAGCTTTCTTTCAGTCTCTTGTGCCCAAATGGATGAGATTGAAGCCGGTTTGTGCAAGAGCAGTGTTCGATTCTTTTGGGTAGCTCGTGGTGAAATCGGTAGGTTACGAGAGGTTTGTGGTGATAAGGGGTTAGTAGTGCCCTGGTGTGACCAATTGCGAGTGTTATGTCATCCTTGTATTGGGGGGTTTTTGACTCCTTGTGGGTGGAACTCAGTTAGCGAAGGTGTTTTCTCTGGTGTTCCTTTTCTTACTTTCCCCATGATTTTCGATCAAGGCCTGAACAGTAAGATGGTTGTGGAGGATTGGAAGATTGGATGGAAGGTGAAGAGACCTGAGGCGAAAATCGACCAGGCGAAAATTGCAGGGTTGGTGAAGAAATTCATGGATTTGGAGGATGGTGAAGGGAAAGAGACGAGGAGTAGAGTAAGAGAATTACAGCATACATGGAAGGGTGCCATTGAAGAAGGTGGATCCTTTAAAACCAACTTCGGTGCCTTCATCAGAGATTTCTTGCAATGCCATGCACATCAAGCAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

268

Amino Acids

30.12

Weight (kDa)

5.46

Isoelectric Point (pI)

42.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 71 - 192 1.2e-15 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000228)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30140 AT2G30140 AT2G30150 AT2G30150
fragaria_vesca FvH4_3g39560 FvH4_3g39570 FvH4_3g39580 FvH4_3g39590 FvH4_3g39591 FvH4_3g39620 FvH4_3g39630 FvH4_3g39630 FvH4_3g39631
malus_domestica MD03G1059700.v1.1 MD11G1061800.v1.1 MD11G1061900.v1.1 MD11G1062000.v1.1 MD11G1062100.v1.1 MD11G1062200.v1.1 MD11G1062300.v1.1 MD11G1062400.v1.1 MD11G1062500.v1.1 MD11G1062600.v1.1 MD11G1062700.v1.1 MD11G1062800.v1.1
prunus_persica Prupe.6G049300_v2.0.a1 Prupe.6G049400_v2.0.a1 Prupe.6G049600_v2.0.a1 Prupe.6G049700_v2.0.a1 Prupe.6G049900_v2.0.a1 Prupe.6G050000_v2.0.a1 Prupe.6G050100_v2.0.a1 Prupe.6G050200_v2.0.a1
pyrus_communis pycom03g04800 pycom11g05140 pycom11g05170 pycom11g05180 pycom11g05190 pycom11g05220 pycom11g05230 pycom11g05240 pycom11g05260 pycom11g05270
rosa_chinensis RchiOBHm_Chr5g0071331 RchiOBHm_Chr5g0071341 RchiOBHm_Chr5g0071371 RchiOBHm_Chr5g0071381 RchiOBHm_Chr5g0071431 RchiOBHm_Chr5g0071441 RchiOBHm_Chr5g0071451 RchiOBHm_Chr5g0071461 RchiOBHm_Chr5g0071471
rosa_laevigata RLG00000036203 RLG00000036204 RLG00000036207 RLG00000036208 RLG00000036209 RLG00000036210 RLG00000036213 RLG00000036214 RLG00000036215 RLG00000036217
rosa_multiflora Rmu_co8256977.1_g000001 Rmu_co8352537.1_g000001 Rmu_sc0001567.1_g000004 Rmu_sc0004697.1_g000003 Rmu_sc0006990.1_g000003 Rmu_sc0006990.1_g000004 Rmu_sc0009988.1_g000004 Rmu_sc0009988.1_g000005 Rmu_sc0009988.1_g000006 Rmu_sc0009988.1_g000008 Rmu_sc0009988.1_g000009 Rmu_sc0009988.1_g000014 Rmu_sc0009988.1_g000020 Rmu_sc0009988.1_g000021
rosa_roxburghii Rroxscaffold_1G00009650 Rroxscaffold_1G00009670 Rroxscaffold_1G00009680 Rroxscaffold_1G00009740 Rroxscaffold_1G00009760 Rroxscaffold_1G00009780 Rroxscaffold_1G00009800 Rroxscaffold_7G00203790
rosa_rugosa Rorug05G0411400 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411700 Rorug05G0411700 Rorug05G0411900 Rorug05G0412000 Rorug05G0412200 Rorug05G0412300 Rorug05G0412400 Rorug05G0412500
rosa_samantha Rh1AG118000 Rh1BG088900 Rh1CG112900 Rh5AG467800 Rh5AG467900 Rh5AG468100 Rh5AG468200 Rh5AG468300 Rh5AG468400 Rh5AG468500 Rh5AG468600 Rh5BG486300 Rh5BG486400 Rh5BG486600 Rh5BG486700 Rh5BG486800 Rh5BG487100 Rh5BG487200 Rh5BG487300 Rh5BG487400 Rh5BG487500 Rh5BG487700 Rh5CG510700 Rh5CG510800 Rh5CG511000 Rh5CG511100 Rh5CG511200 Rh5CG511400 Rh5CG511500 Rh5CG511600 Rh5CG511700 Rh5CG511900 Rh5DG497500 Rh5DG497600 Rh5DG497700 Rh5DG498000 Rh5DG498300 Rh5DG498400 Rh5DG498500 Rh5DG498600 Rh5DG498700
rosa_wichuraiana Rw5G043460 Rw5G043470 Rw5G043480 Rw5G043490 Rw5G043500 Rw5G043510 Rw5G043530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 719, 758
AclWI GGATC 2 cut(s) 732, 745
AcsI RAATTY 2 cut(s) 131, 644
AfaI GTAC 2 cut(s) 66, 254
AfiI CCNNNNNNNGG 2 cut(s) 200, 446
AgsI TTSAA 5 cut(s) 41, 101, 178, 308, 728
AjnI CCWGG 2 cut(s) 407, 615
AluBI AGCT 5 cut(s) 97, 182, 243, 270, 350
AluI AGCT 5 cut(s) 97, 182, 243, 270, 350
Alw26I GTCTC 3 cut(s) 286, 589, 671
AlwI GGATC 2 cut(s) 732, 745
AoxI GGCC 1 cut(s) 541
ApoI RAATTY 2 cut(s) 131, 644
Asp700I GAANNNNTTC 1 cut(s) 644
AspS9I GGNCC 2 cut(s) 55, 158
AsuHPI GGTGA 5 cut(s) 368, 398, 601, 649, 677
AvaII GGWCC 2 cut(s) 55, 158
AxyI CCTNAGG 1 cut(s) 600
BaeGI GKGCMC 2 cut(s) 292, 408
BamHI GGATCC 1 cut(s) 737
BanI GGYRCC 2 cut(s) 719, 758
BauI CACGAG 1 cut(s) 351
BccI CCATC 3 cut(s) 550, 576, 656
BciT130I CCWGG 2 cut(s) 409, 617
BcoDI GTCTC 3 cut(s) 286, 589, 671
BfaI CTAG 4 cut(s) 195, 206, 215, 224
BfmI CTRYAG 1 cut(s) 105
Bme1390I CCNGG 2 cut(s) 409, 617
Bme18I GGWCC 2 cut(s) 55, 158
BmgT120I GGNCC 2 cut(s) 55, 158
BmiI GGNNCC 5 cut(s) 56, 57, 721, 739, 760
BmrFI CCNGG 2 cut(s) 409, 617
BsaI GGTCTC 1 cut(s) 589
BsaJI CCNNGG 1 cut(s) 407
Bsc4I CCNNNNNNNGG 2 cut(s) 200, 446
Bse118I RCCGGY 1 cut(s) 311
Bse21I CCTNAGG 1 cut(s) 600
Bse3DI GCAATG 1 cut(s) 788
BseBI CCWGG 2 cut(s) 409, 617
BseDI CCNNGG 1 cut(s) 407
BseGI GGATG 5 cut(s) 10, 304, 436, 587, 667
BseLI CCNNNNNNNGG 2 cut(s) 200, 446
BseMI GCAATG 1 cut(s) 788
BseMII CTCAG 2 cut(s) 492, 591
BseRI GAGGAG 1 cut(s) 697
BseSI GKGCMC 2 cut(s) 292, 408
BseYI CCCAGC 1 cut(s) 25
BshFI GGCC 1 cut(s) 543
BshNI GGYRCC 2 cut(s) 719, 758
BsiSI CCGG 1 cut(s) 312
BslFI GGGAC 1 cut(s) 41
BslI CCNNNNNNNGG 2 cut(s) 200, 446
BsmAI GTCTC 3 cut(s) 286, 589, 671
BsmBI CGTCTC 1 cut(s) 671
BsmFI GGGAC 1 cut(s) 41
BsnI GGCC 1 cut(s) 543
Bso31I GGTCTC 1 cut(s) 589
Bsp1286I GDGCHC 2 cut(s) 292, 408
Bsp1407I TGTACA 1 cut(s) 252
Bsp143I GATC 3 cut(s) 125, 535, 737
BspANI GGCC 1 cut(s) 543
BspCNI CTCAG 2 cut(s) 491, 592
BspLI GGNNCC 5 cut(s) 56, 57, 721, 739, 760
BspPI GGATC 2 cut(s) 732, 745
BspT107I GGYRCC 2 cut(s) 719, 758
BspTNI GGTCTC 1 cut(s) 589
BsrDI GCAATG 1 cut(s) 788
BsrFI RCCGGY 1 cut(s) 311
BsrGI TGTACA 1 cut(s) 252
BssAI RCCGGY 1 cut(s) 311
BssECI CCNNGG 1 cut(s) 407
BssMI GATC 3 cut(s) 125, 535, 737
BssSI CACGAG 1 cut(s) 351
Bst2BI CACGAG 1 cut(s) 351
Bst2UI CCWGG 2 cut(s) 409, 617
Bst4CI ACNGT 2 cut(s) 109, 551
Bst6I CTCTTC 1 cut(s) 587
BstAUI TGTACA 1 cut(s) 252
BstC8I GCNNGC 1 cut(s) 81
BstDEI CTNAG 2 cut(s) 478, 600
BstF5I GGATG 5 cut(s) 10, 304, 436, 587, 667
BstKTI GATC 3 cut(s) 128, 538, 740
BstMAI GTCTC 3 cut(s) 286, 589, 671
BstMBI GATC 3 cut(s) 125, 535, 737
BstMWI GCNNNNNNNGC 2 cut(s) 626, 797
BstNI CCWGG 2 cut(s) 409, 617
BstSCI CCNGG 2 cut(s) 407, 615
BstSFI CTRYAG 1 cut(s) 105
BstSLI GKGCMC 2 cut(s) 292, 408
BstX2I RGATCY 1 cut(s) 737
BstYI RGATCY 1 cut(s) 737
Bsu36I CCTNAGG 1 cut(s) 600
BsuRI GGCC 1 cut(s) 543
BtsCI GGATG 5 cut(s) 10, 304, 436, 587, 667
BtsI GCAGTG 2 cut(s) 137, 334
BtsIMutI CAGTG 2 cut(s) 137, 334
Cac8I GCNNGC 1 cut(s) 81
Cfr10I RCCGGY 1 cut(s) 311
Cfr13I GGNCC 2 cut(s) 55, 158
Csp6I GTAC 2 cut(s) 65, 253
CviAII CATG 4 cut(s) 526, 649, 711, 788
CviJI RGCY 8 cut(s) 97, 182, 223, 243, 270, 311, 350, 543
CviKI_1 RGCY 8 cut(s) 97, 182, 223, 243, 270, 311, 350, 543
CviQI GTAC 2 cut(s) 65, 253
DdeI CTNAG 2 cut(s) 478, 600
DpnI GATC 3 cut(s) 127, 537, 739
DpnII GATC 3 cut(s) 125, 535, 737
DraI TTTAAA 1 cut(s) 745
Eam1104I CTCTTC 1 cut(s) 587
EarI CTCTTC 1 cut(s) 587
Eco147I AGGCCT 1 cut(s) 543
Eco31I GGTCTC 1 cut(s) 589
Eco47I GGWCC 2 cut(s) 55, 158
Eco81I CCTNAGG 1 cut(s) 600
EcoO109I RGGNCCY 1 cut(s) 55
EcoRII CCWGG 2 cut(s) 407, 615
Esp3I CGTCTC 1 cut(s) 671
FaeI CATG 4 cut(s) 529, 652, 714, 791
FaqI GGGAC 1 cut(s) 41
FatI CATG 4 cut(s) 525, 648, 710, 787
FokI GGATG 5 cut(s) 17, 311, 423, 594, 674
FspBI CTAG 4 cut(s) 195, 206, 215, 224
GsaI CCCAGC 1 cut(s) 29
HaeIII GGCC 1 cut(s) 543
HapII CCGG 1 cut(s) 312
Hin1II CATG 4 cut(s) 529, 652, 714, 791
HindIII AAGCTT 1 cut(s) 268
HinfI GANTC 3 cut(s) 227, 336, 460
HpaII CCGG 1 cut(s) 312
HphI GGTGA 5 cut(s) 368, 398, 601, 649, 677
Hpy188I TCNGA 2 cut(s) 130, 770
Hpy188III TCNNGA 2 cut(s) 206, 215
HpyAV CCTTC 6 cut(s) 482, 580, 662, 709, 725, 772
HpyCH4III ACNGT 2 cut(s) 109, 551
HpyCH4V TGCA 4 cut(s) 321, 629, 781, 791
HpyF10VI GCNNNNNNNGC 2 cut(s) 626, 797
HpyF3I CTNAG 2 cut(s) 478, 600
Hsp92II CATG 4 cut(s) 529, 652, 714, 791
KflI GGGWCCC 1 cut(s) 55
Kzo9I GATC 3 cut(s) 125, 535, 737
MaeI CTAG 4 cut(s) 195, 206, 215, 224
MaeIII GTNAC 2 cut(s) 369, 413
MalI GATC 3 cut(s) 127, 537, 739
MboI GATC 3 cut(s) 125, 535, 737
MboII GAAGA 5 cut(s) 53, 586, 604, 652, 740
MfeI CAATTG 2 cut(s) 153, 419
MflI RGATCY 1 cut(s) 737
MhlI GDGCHC 2 cut(s) 292, 408
MluCI AATT 6 cut(s) 131, 153, 419, 624, 644, 698
MlyI GAGTC 1 cut(s) 454
MnlI CCTC 7 cut(s) 180, 201, 370, 559, 595, 652, 675
MroXI GAANNNNTTC 1 cut(s) 644
MseI TTAA 2 cut(s) 122, 744
MslI CAYNNNNRTG 1 cut(s) 260
MspI CCGG 1 cut(s) 312
MspR9I CCNGG 2 cut(s) 409, 617
MunI CAATTG 2 cut(s) 153, 419
MvaI CCWGG 2 cut(s) 409, 617
MwoI GCNNNNNNNGC 2 cut(s) 626, 797
NdeII GATC 3 cut(s) 125, 535, 737
NlaIII CATG 4 cut(s) 529, 652, 714, 791
NlaIV GGNNCC 5 cut(s) 56, 57, 721, 739, 760
NmuCI GTSAC 1 cut(s) 413
PceI AGGCCT 1 cut(s) 543
PdmI GAANNNNTTC 1 cut(s) 644
PfeI GAWTC 2 cut(s) 227, 336
PleI GAGTC 1 cut(s) 454
PpsI GAGTC 1 cut(s) 454
PpuMI RGGWCCY 1 cut(s) 55
Psp5II RGGWCCY 1 cut(s) 55
Psp6I CCWGG 2 cut(s) 407, 615
PspFI CCCAGC 1 cut(s) 25
PspGI CCWGG 2 cut(s) 407, 615
PspN4I GGNNCC 5 cut(s) 56, 57, 721, 739, 760
PspPI GGNCC 2 cut(s) 55, 158
PspPPI RGGWCCY 1 cut(s) 55
PsuI RGATCY 1 cut(s) 737
RsaI GTAC 2 cut(s) 66, 254
RsaNI GTAC 2 cut(s) 65, 253
RseI CAYNNNNRTG 1 cut(s) 260
SaqAI TTAA 2 cut(s) 122, 744
Sau3AI GATC 3 cut(s) 125, 535, 737
Sau96I GGNCC 2 cut(s) 55, 158
SchI GAGTC 1 cut(s) 454
ScrFI CCNGG 2 cut(s) 409, 617
SduI GDGCHC 2 cut(s) 292, 408
SfcI CTRYAG 1 cut(s) 105
SinI GGWCC 2 cut(s) 55, 158
SmiMI CAYNNNNRTG 1 cut(s) 260
Sse9I AATT 6 cut(s) 131, 153, 419, 624, 644, 698
SseBI AGGCCT 1 cut(s) 543
SspMI CTAG 4 cut(s) 195, 206, 215, 224
StuI AGGCCT 1 cut(s) 543
StyD4I CCNGG 2 cut(s) 407, 615
TaaI ACNGT 2 cut(s) 109, 551
TaqI TCGA 3 cut(s) 334, 534, 612
TasI AATT 6 cut(s) 131, 153, 419, 624, 644, 698
TatI WGTACW 2 cut(s) 64, 252
TfiI GAWTC 2 cut(s) 227, 336
Tru1I TTAA 2 cut(s) 122, 744
Tru9I TTAA 2 cut(s) 122, 744
TscAI CASTG 2 cut(s) 144, 334
TseFI GTSAC 1 cut(s) 413
Tsp45I GTSAC 1 cut(s) 413
TspDTI ATGAA 2 cut(s) 637, 754
TspRI CASTG 2 cut(s) 144, 334
VpaK11BI GGWCC 2 cut(s) 55, 158
XapI RAATTY 2 cut(s) 131, 644
XbaI TCTAGA 2 cut(s) 205, 214
XmnI GAANNNNTTC 1 cut(s) 644
XspI CTAG 4 cut(s) 195, 206, 215, 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.