Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000228

Physical Location & Seq

Genomic Coordinates Reverse (-)

56975610 .. 56976110

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0412300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGAAACTACTTTAGTACTGTTGATTTCTCTTTTCCTCATTTTCAATGCCGTCGCCTCAACTCTCTGTTGTGATCCCTCAGGCTCTATAGTTTGCCAGGGAACATCCTTCCCTACATTCACATGCTCGCCGCCGGTAACGTCACCAACTGGAGCCAAACTGACCCTCAACGATTTCAGCAAAGGCGGTGACGGCGGGCACCCATCGGAGTGTGACGGGCAATATCATGACAACAGTGAGCTAATTGTGGCACTATCCACCGGGTGGTACAATAGTGGGTCCCATTGTGGGAGCATGATAACAGTTGCGGCAATTAATGGGGCGGGTGTGATGGCTAAAGTGGCGGACGAATGTGATTCGCGTGCTGGAGGTAACGGAGAACATGGCCATCAGCCGCCGTGCTTGAGCAATATTATTGACGGCTCTGCAGCTGTGTGGAATGCTTTGGGACTTGATCAAGGGGTACGAATTATGGACGTTACTTGGGCCATGAGTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0008194 GO:0009909 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0080043 GO:0080044 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

166

Amino Acids

17.1

Weight (kDa)

4.49

Isoelectric Point (pI)

37.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KWL1	PF24300	20 - 163	2.6e-44	Kiwellin-1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30140 AT2G30140 AT2G30150 AT2G30150
fragaria_vesca	FvH4_3g39560 FvH4_3g39570 FvH4_3g39580 FvH4_3g39590 FvH4_3g39591 FvH4_3g39620 FvH4_3g39630 FvH4_3g39630 FvH4_3g39631
malus_domestica	MD03G1059700.v1.1 MD11G1061800.v1.1 MD11G1061900.v1.1 MD11G1062000.v1.1 MD11G1062100.v1.1 MD11G1062200.v1.1 MD11G1062300.v1.1 MD11G1062400.v1.1 MD11G1062500.v1.1 MD11G1062600.v1.1 MD11G1062700.v1.1 MD11G1062800.v1.1
prunus_persica	Prupe.6G049300_v2.0.a1 Prupe.6G049400_v2.0.a1 Prupe.6G049600_v2.0.a1 Prupe.6G049700_v2.0.a1 Prupe.6G049900_v2.0.a1 Prupe.6G050000_v2.0.a1 Prupe.6G050100_v2.0.a1 Prupe.6G050200_v2.0.a1
pyrus_communis	pycom03g04800 pycom11g05140 pycom11g05170 pycom11g05180 pycom11g05190 pycom11g05220 pycom11g05230 pycom11g05240 pycom11g05260 pycom11g05270
rosa_chinensis	RchiOBHm_Chr5g0071331 RchiOBHm_Chr5g0071341 RchiOBHm_Chr5g0071371 RchiOBHm_Chr5g0071381 RchiOBHm_Chr5g0071431 RchiOBHm_Chr5g0071441 RchiOBHm_Chr5g0071451 RchiOBHm_Chr5g0071461 RchiOBHm_Chr5g0071471
rosa_laevigata	RLG00000036203 RLG00000036204 RLG00000036207 RLG00000036208 RLG00000036209 RLG00000036210 RLG00000036213 RLG00000036214 RLG00000036215 RLG00000036217
rosa_multiflora	Rmu_co8256977.1_g000001 Rmu_co8352537.1_g000001 Rmu_sc0001567.1_g000004 Rmu_sc0004697.1_g000003 Rmu_sc0006990.1_g000003 Rmu_sc0006990.1_g000004 Rmu_sc0009988.1_g000004 Rmu_sc0009988.1_g000005 Rmu_sc0009988.1_g000006 Rmu_sc0009988.1_g000008 Rmu_sc0009988.1_g000009 Rmu_sc0009988.1_g000014 Rmu_sc0009988.1_g000020 Rmu_sc0009988.1_g000021
rosa_roxburghii	Rroxscaffold_1G00009650 Rroxscaffold_1G00009670 Rroxscaffold_1G00009680 Rroxscaffold_1G00009740 Rroxscaffold_1G00009760 Rroxscaffold_1G00009780 Rroxscaffold_1G00009800 Rroxscaffold_7G00203790
rosa_rugosa	Rorug05G0411400 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411700 Rorug05G0411700 Rorug05G0411900 Rorug05G0412000 Rorug05G0412200 Rorug05G0412300 Rorug05G0412400 Rorug05G0412500
rosa_samantha	Rh1AG118000 Rh1BG088900 Rh1CG112900 Rh5AG467800 Rh5AG467900 Rh5AG468100 Rh5AG468200 Rh5AG468300 Rh5AG468400 Rh5AG468500 Rh5AG468600 Rh5BG486300 Rh5BG486400 Rh5BG486600 Rh5BG486700 Rh5BG486800 Rh5BG487100 Rh5BG487200 Rh5BG487300 Rh5BG487400 Rh5BG487500 Rh5BG487700 Rh5CG510700 Rh5CG510800 Rh5CG511000 Rh5CG511100 Rh5CG511200 Rh5CG511400 Rh5CG511500 Rh5CG511600 Rh5CG511700 Rh5CG511900 Rh5DG497500 Rh5DG497600 Rh5DG497700 Rh5DG498000 Rh5DG498300 Rh5DG498400 Rh5DG498500 Rh5DG498600 Rh5DG498700
rosa_wichuraiana	Rw5G043460 Rw5G043470 Rw5G043480 Rw5G043490 Rw5G043500 Rw5G043510 Rw5G043530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	198
AccB7I	CCANNNNNTGG	1 cut(s)	264
AccII	CGCG	1 cut(s)	361
AciI	CCGC	7 cut(s)	131, 186, 195, 308, 323, 344, 395
AclWI	GGATC	1 cut(s)	68
AcoI	YGGCCR	1 cut(s)	385
AdeI	CACNNNGTG	1 cut(s)	264
AfaI	GTAC	3 cut(s)	18, 269, 465
AfiI	CCNNNNNNNGG	2 cut(s)	264, 288
AgsI	TTSAA	1 cut(s)	46
AjnI	CCWGG	1 cut(s)	96
AluBI	AGCT	2 cut(s)	241, 431
AluI	AGCT	2 cut(s)	241, 431
AlwI	GGATC	1 cut(s)	68
AoxI	GGCC	2 cut(s)	385, 486
ApeKI	GCWGC	1 cut(s)	428
AseI	ATTAAT	1 cut(s)	315
AspS9I	GGNCC	2 cut(s)	279, 486
AsuC2I	CCSGG	1 cut(s)	262
AsuHPI	GGTGA	2 cut(s)	135, 200
AvaII	GGWCC	1 cut(s)	279
AxyI	CCTNAGG	1 cut(s)	79
BaeGI	GKGCMC	1 cut(s)	201
BaeI	ACNNNNGTAYC	2 cut(s)	259, 292
BalI	TGGCCA	1 cut(s)	387
BanI	GGYRCC	1 cut(s)	198
BbvI	GCAGC	1 cut(s)	440
BccI	CCATC	3 cut(s)	211, 325, 396
BceAI	ACGGC	4 cut(s)	35, 208, 382, 436
BciT130I	CCWGG	1 cut(s)	98
BclI	TGATCA	1 cut(s)	454
BcnI	CCSGG	1 cut(s)	262
BfmI	CTRYAG	2 cut(s)	87, 426
BisI	GCNGC	4 cut(s)	131, 309, 395, 429
BlsI	GCNGC	4 cut(s)	132, 310, 396, 430
BmcAI	AGTACT	1 cut(s)	18
Bme1390I	CCNGG	2 cut(s)	98, 262
Bme18I	GGWCC	1 cut(s)	279
BmgT120I	GGNCC	2 cut(s)	279, 486
BmiI	GGNNCC	4 cut(s)	154, 200, 280, 281
BmrFI	CCNGG	2 cut(s)	98, 262
BpmI	CTGGAG	2 cut(s)	171, 387
BpuEI	CTTGAG	1 cut(s)	424
BpuMI	CCSGG	1 cut(s)	262
BsaJI	CCNNGG	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	2 cut(s)	264, 288
Bse118I	RCCGGY	1 cut(s)	133
Bse1I	ACTGG	1 cut(s)	154
Bse21I	CCTNAGG	1 cut(s)	79
BseBI	CCWGG	1 cut(s)	98
BseDI	CCNNGG	1 cut(s)	97
BseGI	GGATG	1 cut(s)	104
BseLI	CCNNNNNNNGG	2 cut(s)	264, 288
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	1 cut(s)	154
BseSI	GKGCMC	1 cut(s)	201
BseXI	GCAGC	1 cut(s)	440
Bsh1236I	CGCG	1 cut(s)	361
BshFI	GGCC	2 cut(s)	387, 488
BshNI	GGYRCC	1 cut(s)	198
BsiSI	CCGG	2 cut(s)	134, 261
BslFI	GGGAC	2 cut(s)	265, 462
BslI	CCNNNNNNNGG	2 cut(s)	264, 288
BsmFI	GGGAC	2 cut(s)	265, 462
BsmI	GAATGC	1 cut(s)	445
BsnI	GGCC	2 cut(s)	387, 488
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp143I	GATC	2 cut(s)	73, 454
BspACI	CCGC	7 cut(s)	131, 186, 195, 308, 323, 344, 395
BspANI	GGCC	2 cut(s)	387, 488
BspCNI	CTCAG	1 cut(s)	92
BspFNI	CGCG	1 cut(s)	361
BspHI	TCATGA	1 cut(s)	226
BspLI	GGNNCC	4 cut(s)	154, 200, 280, 281
BspMAI	CTGCAG	1 cut(s)	430
BspPI	GGATC	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	198
BsrFI	RCCGGY	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	154
BssAI	RCCGGY	1 cut(s)	133
BssECI	CCNNGG	1 cut(s)	97
BssMI	GATC	2 cut(s)	73, 454
Bst2UI	CCWGG	1 cut(s)	98
Bst4CI	ACNGT	3 cut(s)	21, 236, 304
BstC8I	GCNNGC	3 cut(s)	128, 197, 363
BstDEI	CTNAG	1 cut(s)	79
BstF5I	GGATG	1 cut(s)	104
BstFNI	CGCG	1 cut(s)	361
BstKTI	GATC	2 cut(s)	76, 457
BstMBI	GATC	2 cut(s)	73, 454
BstMWI	GCNNNNNNNGC	2 cut(s)	192, 341
BstNI	CCWGG	1 cut(s)	98
BstNSI	RCATGY	1 cut(s)	126
BstSCI	CCNGG	2 cut(s)	96, 260
BstSFI	CTRYAG	2 cut(s)	87, 426
BstSLI	GKGCMC	1 cut(s)	201
BstUI	CGCG	1 cut(s)	361
BstV1I	GCAGC	1 cut(s)	440
Bsu36I	CCTNAGG	1 cut(s)	79
BsuRI	GGCC	2 cut(s)	387, 488
BtsCI	GGATG	1 cut(s)	104
BtsIMutI	CAGTG	1 cut(s)	241
Cac8I	GCNNGC	3 cut(s)	128, 197, 363
CciI	TCATGA	1 cut(s)	226
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	2 cut(s)	279, 486
Csp6I	GTAC	3 cut(s)	17, 268, 464
CviAII	CATG	6 cut(s)	123, 227, 295, 383, 490, 498
CviJI	RGCY	9 cut(s)	84, 155, 241, 335, 387, 394, 423, 431, 488
CviKI_1	RGCY	9 cut(s)	84, 155, 241, 335, 387, 394, 423, 431, 488
CviQI	GTAC	3 cut(s)	17, 268, 464
DdeI	CTNAG	1 cut(s)	79
DpnI	GATC	2 cut(s)	75, 456
DpnII	GATC	2 cut(s)	73, 454
DraIII	CACNNNGTG	1 cut(s)	264
EaeI	YGGCCR	1 cut(s)	385
EciI	GGCGGA	1 cut(s)	359
Eco47I	GGWCC	1 cut(s)	279
Eco81I	CCTNAGG	1 cut(s)	79
EcoO109I	RGGNCCY	1 cut(s)	279
EcoRII	CCWGG	1 cut(s)	96
FaeI	CATG	6 cut(s)	126, 230, 298, 386, 493, 501
FaiI	YATR	8 cut(s)	89, 124, 228, 296, 384, 473, 491, 499
FaqI	GGGAC	2 cut(s)	265, 462
FatI	CATG	6 cut(s)	122, 226, 294, 382, 489, 497
FauI	CCCGC	2 cut(s)	188, 316
FbaI	TGATCA	1 cut(s)	454
Fnu4HI	GCNGC	4 cut(s)	131, 309, 395, 429
FokI	GGATG	1 cut(s)	91
Fsp4HI	GCNGC	4 cut(s)	131, 309, 395, 429
GluI	GCNGC	4 cut(s)	131, 309, 395, 429
GsuI	CTGGAG	2 cut(s)	171, 387
HaeIII	GGCC	2 cut(s)	387, 488
HapII	CCGG	2 cut(s)	134, 261
Hin1II	CATG	6 cut(s)	126, 230, 298, 386, 493, 501
HinfI	GANTC	2 cut(s)	356, 493
HpaII	CCGG	2 cut(s)	134, 261
HphI	GGTGA	2 cut(s)	135, 200
Hpy188I	TCNGA	1 cut(s)	208
Hpy188III	TCNNGA	1 cut(s)	227
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	1 cut(s)	118
HpyCH4III	ACNGT	3 cut(s)	21, 236, 304
HpyCH4IV	ACGT	2 cut(s)	140, 477
HpyCH4V	TGCA	1 cut(s)	428
HpyF10VI	GCNNNNNNNGC	2 cut(s)	192, 341
HpyF3I	CTNAG	1 cut(s)	79
HpySE526I	ACGT	2 cut(s)	140, 477
Hsp92II	CATG	6 cut(s)	126, 230, 298, 386, 493, 501
KflI	GGGWCCC	1 cut(s)	279
Ksp22I	TGATCA	1 cut(s)	454
Kzo9I	GATC	2 cut(s)	73, 454
LmnI	GCTCC	2 cut(s)	152, 291
LpnPI	CCDG	7 cut(s)	66, 83, 110, 135, 147, 274, 351
Lsp1109I	GCAGC	1 cut(s)	440
MaeII	ACGT	2 cut(s)	140, 477
MaeIII	GTNAC	6 cut(s)	136, 141, 188, 212, 371, 478
MalI	GATC	2 cut(s)	75, 456
MboI	GATC	2 cut(s)	73, 454
MhlI	GDGCHC	1 cut(s)	201
MlsI	TGGCCA	1 cut(s)	387
MluCI	AATT	3 cut(s)	243, 312, 468
MluNI	TGGCCA	1 cut(s)	387
MnlI	CCTC	5 cut(s)	47, 67, 88, 176, 362
Mox20I	TGGCCA	1 cut(s)	387
MscI	TGGCCA	1 cut(s)	387
MseI	TTAA	1 cut(s)	315
MslI	CAYNNNNRTG	2 cut(s)	121, 208
Msp20I	TGGCCA	1 cut(s)	387
MspA1I	CMGCKG	1 cut(s)	431
MspI	CCGG	2 cut(s)	134, 261
MspR9I	CCNGG	2 cut(s)	98, 262
Mva1269I	GAATGC	1 cut(s)	445
MvaI	CCWGG	1 cut(s)	98
MvnI	CGCG	1 cut(s)	361
MwoI	GCNNNNNNNGC	2 cut(s)	192, 341
NciI	CCSGG	1 cut(s)	262
NdeII	GATC	2 cut(s)	73, 454
NlaIII	CATG	6 cut(s)	126, 230, 298, 386, 493, 501
NlaIV	GGNNCC	4 cut(s)	154, 200, 280, 281
NmuCI	GTSAC	3 cut(s)	141, 188, 212
NspI	RCATGY	1 cut(s)	126
PagI	TCATGA	1 cut(s)	226
PctI	GAATGC	1 cut(s)	445
PfeI	GAWTC	1 cut(s)	356
PflMI	CCANNNNNTGG	1 cut(s)	264
PkrI	GCNGC	4 cut(s)	132, 310, 396, 430
PpuMI	RGGWCCY	1 cut(s)	279
PshBI	ATTAAT	1 cut(s)	315
Psp5II	RGGWCCY	1 cut(s)	279
Psp6I	CCWGG	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	96
PspN4I	GGNNCC	4 cut(s)	154, 200, 280, 281
PspPI	GGNCC	2 cut(s)	279, 486
PspPPI	RGGWCCY	1 cut(s)	279
PstI	CTGCAG	1 cut(s)	430
PvuII	CAGCTG	1 cut(s)	431
RsaI	GTAC	3 cut(s)	18, 269, 465
RsaNI	GTAC	3 cut(s)	17, 268, 464
RseI	CAYNNNNRTG	2 cut(s)	121, 208
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	4 cut(s)	131, 309, 395, 429
Sau3AI	GATC	2 cut(s)	73, 454
Sau96I	GGNCC	2 cut(s)	279, 486
ScaI	AGTACT	1 cut(s)	18
ScrFI	CCNGG	2 cut(s)	98, 262
SduI	GDGCHC	1 cut(s)	201
SetI	ASST	5 cut(s)	143, 243, 373, 433, 480
SfcI	CTRYAG	2 cut(s)	87, 426
SinI	GGWCC	1 cut(s)	279
SmiMI	CAYNNNNRTG	2 cut(s)	121, 208
SmlI	CTYRAG	1 cut(s)	403
SmoI	CTYRAG	1 cut(s)	403
Sse9I	AATT	3 cut(s)	243, 312, 468
SsiI	CCGC	7 cut(s)	131, 186, 195, 308, 323, 344, 395
SspI	AATATT	1 cut(s)	412
StyD4I	CCNGG	2 cut(s)	96, 260
TaaI	ACNGT	3 cut(s)	21, 236, 304
TaiI	ACGT	2 cut(s)	143, 480
TasI	AATT	3 cut(s)	243, 312, 468
TatI	WGTACW	1 cut(s)	16
TauI	GCSGC	3 cut(s)	133, 311, 397
TfiI	GAWTC	1 cut(s)	356
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	1 cut(s)	241
TseFI	GTSAC	3 cut(s)	141, 188, 212
TseI	GCWGC	1 cut(s)	428
Tsp45I	GTSAC	3 cut(s)	141, 188, 212
TspGWI	ACGGA	1 cut(s)	390
TspRI	CASTG	1 cut(s)	241
Van91I	CCANNNNNTGG	1 cut(s)	264
VpaK11BI	GGWCC	1 cut(s)	279
VspI	ATTAAT	1 cut(s)	315
XceI	RCATGY	1 cut(s)	126
ZrmI	AGTACT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.